James P. Barry, Senior Scientist

MBARI, 7700 Sandholdt Road, Moss Landing, CA 95039

barry@mbari.org, www.mbari.org/staff/barry


PUBLICATIONS (Peer-reviewed)

Submitted / In process

·         Buck, K.R., Barry, J.P., Hallam, S.J. (submitted).  Microbial Assemblages Associated with Thioploca Sheaths from Cold Seep Settings in Monterey Bay.  Applied Env. Microbiology

·         Barry, J.P., Pane, E.F., Buck, K.R., Lovera, C.  (in revision) Amplified ocean acidification in the deep-sea and the threat for deep-sea ecosystems.  

·         Barry, J.P. Buck, K.R., Lovera, C., Brewer, P.G., Seibel, B.A., Drazen, J.C., Tamburri, M.N., Whaling, P.J., Kuhnz, L., Pane, E.  Sensitivity of deep-sea animals to a high-CO2 ocean.  Marine Ecology Progress Series, (in revision).

·         Johnson, K.J., Barry, J.P., Coletti, L.J., Fitzwater, S.E., Jannasch, H.W., Lovera, C.F. (submitted).  Nitrate and oxygen flux across the sediment-water interface observed by eddy correlation measurements on the open continental shelf.  Limnol. & Oceanograph. Methods.


In Press

·         Barry, J.P., Widdicombe, S., Hall-Spencer, J. (in press).  Effects of ocean acidification on marine biodiversity and ecosystem function.  Chapter 10 in, Ocean Acidification, J.P. Gattuso, ed., Oxford Univ. Press,

·         Doney, S. C., Ruckelshaus, M., Duffy, J.E., Barry, J.P., Chan, F., English, C.A., Galindo, H.M., Grebmeier, J.M., Hollowed, A.B., Knowlton, N., Polovina, J., Rabalasi, n.N., Sydeman, W.J., Talley, L.D. (in press).  Climate change impacts on marine ecosystems.  Annual Reviews of Marine Science

·         Buck, K.R., Rabalais, N., Bernhard, J.M., Barry, J.P.  (in press) Living assemblages from the ‘dead zone’ and naturally occurring hypoxic zones. 



·         McClain, C.R., Nekola, J.C., Kuhnz, L., Barry, J.P. (2011).  Local-scale faunal turnover on the deep Pacific floor.  Mar. Ecol. Prog. Ser., 422: 193-200.


·         National Research Council Committee (J. Barry – member), (2010).  Ocean Acidification: A national strategy to meet the challenges of a changing ocean.  The Nat. Acad. Press, Washington, D.C.

·         Hofmann, G.E., Barry, J.P., Edmunds, P.J., Gates, R.D., Hutchins, D.A., Klinger, T., Sewell, M.A. (2010).  The effects of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. (2010)  Ann. Rev. of Ecol., Evol. & Syst. 41: 127-47.

·         Barry, J.P., Hall-Spencer, J.M., Tyrrell, T. (2010) In situ perturbation experiments: natural venting sites, spatial/temporal gradients in ocean pH, manipulative in situ p(CO2) perturbations.  Pages 123-136 in, Best Practices for Ocean Acidification Research, U. Riebesell, V.J. Fabry, L. Hansson, J.-P. Gattuso, eds., European Commission, Luxembourg, 258p.

·         McClain, C.R., Lundsten, L., Barry, J.P., and DeVogelaere, A. (2010).  Assemblage structure, but no diversity or density, change with depth on a northeast Pacific seamount.  Mar. Ecol., 31(Suppl. 1: 114-25.

·         Barry, J.P., Tyrrell, T., Hansson, L., Plattner, G.-K., Gattuso, J.-P. (2010).  Atmospheric CO2 targets for ocean acidification perturbation experiments. Pages 53-63 in, Best Practices for Ocean Acidification Research, U. Riebesell, V.J. Fabry, L. Hansson, J.-P. Gattuso, eds., European Commission, Luxembourg, 258p.

·         McClain, C.R., Barry, J.P. (2010).  The Role of Abrupt Topography on Species Diversity in the Deep-Sea Benthos, Ecology, 91(4): 964-976.

·         Paull, C.K., Schlining, B., Ussler, W. III, Lundsten, E., Barry, J.P., Caress, D.W., Johnson, J., McGann, M.  (2010) Submarine mass transport within Monterey Canyon: Benthic disturbance controls the distribution of chemosynthetic biological communities.  In: D.C. Mosher et al. (eds.), Submarine Mass Movements and Their Consequences, Advances in Natural and Technological Hazards Research, Vol. 28: 229-246.

·         Fleeger, J.W., Johnson, D.S., Carman, K.R., Weisenhorn, P.B., Gabriele, A., Thistle, D., Barry, J.P.  (2010).  The response of nematodes to deep-sea CO2 sequestration: A quantile regression approach.  Deep-Sea Res. I, 57:696-707.


·         Ricketts, E.R., Kennett, J.P., Hill, T.M., and Barry J.P.  (2009). Effects of carbon dioxide sequestration on California margin deep-sea foraminiferal assemblages.  Mar. Micropaleontology 72: 165-175.

·         Barry, J.P., and Hashimoto, J.  (2009). Revisiting the Challenger Deep using the ROV Kaiko.  Mar. Tech. Soc., 43(5):1-2.

·         Bernhard, J.M., Barry, J.P., Buck, K.R., Starczak, V.R. (2009) Impact of intentionally injected carbon dioxide hydrate on deep-sea benthic foraminiferal survival.  Global Change Biology, doi: 10.111/j.1365-2486.2008.01822.x

·         Paull, C.K., Schlining, B., Ussler, W. III, Lundsten, E., Barry, J.P., and Caress, D.W., 2009, Submarine mass transport within Monterey Canyon: Benthic Disturbance controls on the distribution of chemosynthetic biological communities, In: Submarine Mass Movements and Their Consequences, 4th International Symposium, Mosher, D.C., Shipp, R.C., Moscardelli, L., Chaytor, J.D., Baxter, C.D.P. Lee, H.J., and Urgeles R., (eds.), Springer, p. 229-246.

·         Sedlacek, L., Thistle, D., Carman, K.R., Fleeger, J.W., Barry, J.P. (2009).  Effects of carbon dioxide on deep-sea harpacticoids revisited.  Deep-Sea Res. I, 56: 1018-1025.

·         Lundsten, L., McClain, C.R., Barry, J.P., Cailliet, G.M., Clague, D.A., DeVogelaere, A.P. (2009).  Ichthyofauna on three seamounts off southern and central California, USA.  Mar. Ecol. Prog. Ser. 389: 223-232.

·         Lundsten, L., Barry, J.P., Cailliet, G.M. Clague, D.A., DeVogelaere, A.P., Geller, J.B.  (2009).  The distribution of benthic invertebrate communities at three seamounts off southern and central California,  Marine Ecology Progress Series 374: 23-32


·         McClain, C.R., Lundsten, L., Ream, M., Barry, J.P., DeVogelaere, A. (2008). Endemicity, Biogeography, Composition, and Community Structure on a Northeast Pacific Seamount.  PLoS ONE 4(1): e4141

·         Pane, E.F., Grosell, M., Barry J.P. (2008).  Hypercapnic tolerance of deep- and shallow-living crabs.  Aquatic Biology, 4: 23-32.

·         Barry, J.P., Lovera, C., Okuda, C., Nelson, E., Pane, E. (2008)  A gas-controlled aquarium system for ocean acidification studies.  IEEE Xplore, 978-4244-2126-08/08

·         Fabry, V.J., C. Langdon, W.M. Balch, A.G. Dickson, R.A. Feely, B. Hales, D.A. Hutchins, J.A. Kleypas, and C.L. Sabine (J.P. Barry – contributing author) (2008) Present and Future Impacts of Ocean Acidification on Marine Ecosystems and Biogeochemical Cycles, report of the Ocean Carbon and Biogeochemistry Scoping Workshop on Ocean Acidification Research held 9-11 October 2007, La Jolla, CA.


·         Barry, J.P. & J.C. Drazen (2007).  Response of deep-sea scavengers to mild hypercapnia and the odor from a dead grenadier.  Marine Ecology Progress Series, 350: 193-207.

·         Pane, E.F., Barry, J.P. (2007).  Inefficient acid-base regulation in the deep-sea decapod crab (Chionoecetes tanneri) during short-term hypercapnia.  Mar. Ecol. Prog. Ser., 334:1--9

·         Levin, L.A., Barry, J.P., Felbeck, H., Smith, C.R., Young, C.M. (2007).  Advances in vent, seep, whale-, and wood-fall biology.  Marine Ecology, 28: 1-2.

·         Caldeira, K, Archer, D., Barry, J.P., Bellerby, R., Brewer, P., Cao, L, Dickson, A.G., Doney, S.C., Elderfield, H., Fabry, V., Freely, R.A., Gattuso, J.P., Hoegh-Guldberg, O., Haugan, P.M., Kleypas, J.A., Langdon, C., Orr, J.C., Ridgwell, A., Sabine, C.L., Seibel, B., Turley, C., Watson, A., Zeebe, R. (2007).  Comment on “Modern-age buildup of CO2 and its effects on seawater acidity and salinity”  Geophysical Res. Letters, 34, L18608, doi:10.1029/2006GL027288

·         Thistle, D., Sedlacek, L., Carman, K.R., Fleeger, J.W., Barry, J.P.  (2007). Emergence in the deep-sea: evidence from harpacticoid copepods.  Deep-Sea Research, 54: 1008-1014

·         Barry, J.P., Whaling, P.J., Kochevar, R.K. (2007).  Growth, production, and mortality of the chemosynthetic vesicomyid bivalve, Calyptogena kilmeri, from cold seeps off central California.  Marine Ecology, 28: 169-182

·         Grebmeier, J.M., and Barry, J.P.  (2007) Benthic processes in polar polynyas.  Pages 262-290 in: Polynyas: Windows into Polar Oceans, Elsevier Oceanography Series, David Halpern, editor.

·         Thistle, D., Sedlacek, L., Carman, K.R., Fleeger, J.W., Brewer, P.G., Barry, J.P.  (2007). Exposure to carbon dioxide-rich seawater is stressful for deep-sea species: an in situ, behavioral study.  Mar. Ecol. Prog. Ser., 340: 9-16.

·         Fujikura, K., Amaki, K., Barry, J.P., Fujiwara, Y., Furushima, Y., Iwase, R., Yamamoto, H., Maruyama, T. (2007).  Direct observations of spawning behavior and synchrony in Calyptogena clams using an observatory and an estimate of fecundity.  Mar. Ecol. Prog. Ser. 333:185-193.


·         Fleeger, J.W., Carman, K.R., Weisenhorn, P.B., Sofranko, H., Marshall, T., Thistle, D., and Barry, J.P. (2006).  Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: effects on nematode abundance and biovolume.  Deep-Sea Research I, 53: 1135-1147

·         Thistle, D., Sedlacek, L., Carman, K.R., Fleeger, J.W., Brewer, P.G., Barry, J.P. (2006).  Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: effects on harpacticoid-copepod species.  J. Exp. Mar. Biol. Ecol., 330: 141-158

·         Kogan, I., Paull, C.K., Kuhnz, L.A., Burton, E.J., VonThun, S., Greene, H.G., Barry, J.P.  (2006) ATOC/Pioneer Seamount cable after 8 years on the seafloor: Observations and environmental impact.  Continental Shelf Research, 26: 771-787.

·         Stein, D.L., Drazen, J.C., Schlining, K.L., Barry, J.P., Kuhnz, L. (2006).  Snailfishes of Monterey Canyon: video, photographic, and morphological observations.  J. Fish Biology, 69: 970-986.


·         Barry, J.P., Buck, K.R., Lovera, C., Kuhnz, L, Whaling, P.J. (2005) Utility of deep-sea CO2 release experiments in understanding the biology of a high CO2 ocean: Effects of hypercapnia on deep-sea meiofauna.  Journal of Geophysical Research, Oceans, 110, C09S12.

·         Paull, C.K., Ussler, W., III., Barry, J.P., Greene, H.G., and Keaten, R., 2005, Bioerosion by chemosynthetic biological communities on Holocene slide scars, Geo-Marine Letters, 25: 11-19.

·         Drazen, J.C., Bird, L.E., Barry, J.P.  2005.  Development of a hyperbaric trap-respirometer for the capture and maintenance of live deep-sea organisms.  Limnol. and Ocean. Methods, 3, 48849

·         Caldeira, K., Brewer, P.G., Chen, B., Hansen, L., Haugan, P., Iwama, T., Johnston, P., Kheshgi, H., Li, Q., Ohsumi, T., Poertner, H., Sabine, C., Shirayama, Y., Thomson, J. (authors), Barry, J.P. (contributing author) (2005).  Chapter 6: Ocean Storage.  In IPCC Special Report on Carbon Dioxide Capture and Storage, Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge

·         Thistle, D., Carman, K.R., Sedlacek, L., Brewer, P.G., Fleeger, J.W., Barry, J.P.  (2005) Deep-ocean, sediment-dwelling animals are sensitive to sequestered carbon dioxide. Mar. Ecol. Prog. Ser., 289: 1-

·         Ricketts, E.R., Kennett, J.P., Hill, T.M., and Barry, J.P (2005).  Effects of CO2 hydrate on deep-sea foraminiferal assemblages.  Proceedings of the Fifth International Conference on Gas Hydrates, Trondheim, Norway, 3, (3020): 839-847.


·         Barry, J.P., Kurt R. Buck, Chris F. Lovera, Linda Kuhnz, Patrick J. Whaling, Edward T. Peltzer, Peter Walz, and Peter G. Brewer (2004)  Effects of Direct Ocean CO2 Injection on Deep-Sea Meiofauna.  Journal of Oceanography, 60: 759-766

·         Carman, K.R., Thistle, D., Fleeger, J., Barry, J.P. (2004)  The influence of introduced CO2 on Deep-Sea metazoan meiofaunal, Journal of Oceanography, 60(4): 767-772

·         Goffredi, S.K., Barry, J.P., and Buck, K.R., (2004)  Vesicomyid symbioses from Monterey Bay (Central California) Cold Seeps.  Symbiosis, 36, 1-27.


·         Barry, J.P., Grebmeier, J., Smith, J., & Dunbar, R.B. (2003)  Bathymetric versus seafloor-habitat control of benthic megafaunal patterns in the Ross Sea, Antarctica, Ant. Res. Series, 78: 327-354.

·         Grebmeier, J.G., DiTullio, G.R., Barry, J.P., & Cooper, L.W.  (2003)  Benthic carbon cycling in the Ross Sea polynya, Antarctica:  Benthic community metabolism and sediment tracers.  Antarctic Research Series, 78: 301-326

·         Paull, C.K., Ussler, W III., Greene, H.G., Keaten, R., Mitts, P., Barry, J.P. (2003)  Caught in the Act: The December 20th, 2001 Gravity Flow Event in Monterey Canyon.  Geo-Mar. Let., 22: 227-232.


·         Yoklavich, M, Cailliet, G., Oxman, D., Barry, J.P., Lindquist, D.C. (2002) Fishes.  Pages 163-185 in Caffrey, J. (Ed.).  Ecosystem Changes in a California Estuary: a Characterization of Elkhorn Slough.  Elkhorn Slough Foundation, Moss Landing, CA

·         Barry, J.P., Buck, K.R., Kochevar, R.K., Nelson, D.C., Fujiwara, Y., Goffredi, S.K., & J. Hashimoto (2002) Methane-based symbiosis in a mussel, Bathymodiolus platifrons, from cold seeps in Sagami Bay, Japan.  Invertebrate Biology, 121(1): 47-54

·         Eastman, J.T. and Barry, J.P.  (2002) Video observation of the Antarctic toothfish, Dissostichus mawsoni (Perciformes: Nototheniidae) in the Ross Sea, Antarctica, Polar Biology, 25: 391-395

·         Goffredi, S.K. and Barry, J.P. (2002) Energy acquisition in vesicomyid symbioses.  Cahier de Biologie Marine, 43: 345-350

·         Goffredi, S.K. & Barry, J.P. (2002)  Species-specific variation in sulfide physiology between closely related vesicomyid clams.  Marine Ecology Progress Series, 225: 227-238.

·         Orange, D.L., Yun, J., Maher, N., Barry, J., Greene, G. (2002)  Tracking California Seafloor seeps with bathymetry, backscatter and ROVs .  Continental Shelf Research, 22: 2273-2290.


·         Bernhard, J.M., Buck, K.M., Barry, J.P. 2001.  Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera, Deep-Sea Research I, 48: 2233-2249.

·         Johnson, K.S., Paull, C.K., Barry, J.P. & Chavez, F.P. (2001).  A decadal record of turbidity underflows from a coastal river in to the deep-sea.  Geology, 29(11): 1019-1022.

·         Torres, M.E., Barry, J.P., & Suess, E.  (2001)  Reconstructing the history of fluid flow at cold seep sites from Ba/Ca in shells of vesicomyid clams.  Limnology & Oceanography, 46(7): 1701-1708.


·         Barry, J.P. & N. Maher (2000) Observation of the prickly shark, Echinorhinus cookei Pietschmann, 1928 from the O2 minimum zone in Santa Barbara Basin, California.  Calif. Fish & Game, 86:213-215.

·         Barry, J.P., Buck, K.R., Goffredi, S.K., & J. Hashimoto (2000) Ultrastructure studies of two chemosynthetic invertebrate-bacterial symbioses (Lamellibrachia sp. and Acharax sp.) from the Hatsushima cold seeps in Sagami Bay, Japan.  JAMSTEC J. Deep-Sea Research, 16: 91-99

·         Buck, K.R., Barry, J.P., Simpson, A.G.B. 2000.  Monterey Bay cold seep biota: euglenozoa with chemoautotrophic bacterial epibionts.  Eur. J. Protistology, 36: 117-126.

·         DiTullio, G.R., Grebmeier, J., Arrigo, K.R., Lizotte, M.P., Robinson, D.H., Leventer, A., Barry, J.P., VanWoert, M., & R.B. Dunbar (2000).  Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica, Nature, 404 (6778): 595-598

·         Peek, A.S., Gaut, B.S., Feldman, R.A., Barry, J.P., Kochevar, R.E., Lutz, R.A., & R.C. Vrijenhoek (2000).  Neutral and nonneutral mitochondrial genetic variation in deep sea clams from the family Vesicomyidae.  J. Molecular Evolution, 50(2):141-153


·         Ahmad, A., Barry, J.P., & D.C. Nelson. (1999) Phylogenetic and physiological affinity of wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon with Thioploca spp.  Applied and Environmental Microbiology, 65(1):270-277.

·         Barry, J.P.  & R E. Kochevar (1999). Calyptogena diagonalis, a new Vesicomyid Bivalve from subduction zone seeps in the eastern North Pacific.  The Veliger, 42(2): 117-123

·         Orange, D.L., Greene, H.G., Reed, D., Martin, J.B., McHugh, C.M., Ryan, W.B.F., Maher, N, Stakes, D. & J.P. Barry (1999).  Widespread fluid expulsion on a translational continental margin: mud volcanoes, fault zones, headless canyons, and aquifers in Monterey Bay, California.  Bull. Geological Society of America 111(7): 992-1009

·         Pennington, J.T., Tamburri, M.N., and J.P. Barry (1999) Development, temperature tolerance, and settlement preference of embryos and larvae of the articulate brachiopod Laqueus californianus. Biological Bulletin, 196: 245-256.

·         Sagarin, R.D., Barry, J.P., Gilman, S.E., & C.H. Baxter (1999).  Climate-related change in an intertidal community over short and long time scales. Ecological Monographs, 69(4): 465-490.

·         Tamburri, M.N. & J.P. Barry (1999).  Adaptations for scavenging by three diverse bathyal species, Eptatretus stouti, Neptunea amianta and Orchomene obtusus. Deep-Sea Research Part It, 46(12):2079-2093

·         Yoklavich, M.M., Cailliet, G.M., Oxman, D.S., Barry, J.P., & D.C. Lindquist (1999).  Fish assemblages of Elkhorn Slough and adjacent habitats.  Elkhorn Slough Res. Res. Profile on Fishes


·         Barry, J.P. & R.E. Kochevar. (1998) A tale of two clams: differing chemosynthetic life styles among vesicomyids in Monterey Bay cold seeps.  Cahier de Biologie Marine 39:329-331

·         Buck, K.R. & J.P. Barry (1998).  Monterey Bay Cold Seep Infauna: Quantitative comparison of bacterial mat meiofauna with non-seep control sites. Cahier de Biologie Marine, 39:333-336.


·         Barry, J.P., R.E. Kochevar, & C.H. Baxter (1997).  The influence of pore-water chemistry and physiology in the distribution of vesicomyid clams at cold seeps in Monterey Bay: Implications for patterns of chemosynthetic community organization.  Limnology and Oceanography, 42(2):318-328.

·         Barry, J.P., R.E. Kochevar, C.H. Baxter, C. Harrold. (1997). Calyptogena packardana, a new species of Vesicomyid Bivalve from Cold Seeps in Monterey Bay, California.  Veliger, 40(4): 341-349

·         Barry, J.P., Kochevar, R.E., J. Hashimoto, Y. Fujiwara, K. Fujikura, & H.G. Greene. (1997)  Studies of the physiology of chemosynthetic fauna at Cold Seeps in Sagami Bay, Japan  JAMSTEC Journal of Deep Sea Research, 13: 417-423

·         Greene, H.G., Barry, J.P. & B.H. Robison. (1997). A submersible-based comparison of cold seep regions in Sagami and Monterey Bays.  JAMSTEC Journal of Deep-Sea Research, 13: 395-415.

·         Lisin, S.E., E.E. Hannan, R.E. Kochevar, C. Harrold, & J.P. Barry (1997) Temporal variation in gametogenic cycles of vesicomyid clams.  Invertebrate Reproduction and Development, 31(1-3): 307-318.


·         Barry, J.P., H.G. Greene, D.L. Orange,  C.H. Baxter, B.H. Robison, R.E. Kochevar, J.W. Nybakken, D.L. Reed, C.M. McHugh (1996).  Biologic and Geologic Characteristics of Cold Seeps in Monterey Bay, California.  Deep-Sea Research, I, 43(11-12): 1739-1762

·         Barry, J.P., Yoklavich, M.M., Cailliet, G.M., Ambrose, D.A., Antrim, B.S. (1996). Trophic ecology of the dominant fishes in Elkhorn Slough, California.  Estuaries, 19: 115-138

·         McHatton, S.C., J.P. Barry, H.W. Jannasch, & D.C. Nelson (1996).  High nitrate concentrations in vacuolate, autotrophic marine Beggiatoa spp.  Appl. and Enviro. Micro. 62: 954-958.


·         Barry, J.P., Baxter, C.H., Sagarin, R.D., Gilman, S.E. (1995).  Climate-related, long-term faunal changes in a California rocky intertidal community.  Science, 267: 672-675

·         Stoker, C.R., D.R. Barch, B.P. Hine III, & J.P. Barry (1995).  Antarctic undersea exploration using a robotic submarine with a telepresence user interface.  IEEE Expert Intelligent systems & their Applications, 10(6): 14-23.


·         Stoker, C., Barry, J.P., Barch, D.R., Hine B.P. III.  (1994) Use of telepresence and virtual reality in undersea exploration: 1993 Antarctic telepresence experiment.  Pages 37-44 in: Proceedings of AAAI workshop AI technologies in environmental applications, Seattle WA, July 30-31, 1994.


·         Barry, J.P. & Ehret, M.J. (1993) Diet, food preference, and algal availability for fishes and crabs on intertidal reef communities in southern California.  Env. Biol. Fish., 37: 75-95.

·         McFeters, G.A., Barry, J.P., Howington, J.P. (1993)  Distribution of enteric bacteria in Antarctic seawater surrounding a sewage outfall.  Water Res., 27: 645-650.


·         Barry, J.P., & Baxter, C.H.  (1992)  Survey design considerations for deep-sea benthic communities using ROVs.  Mar. Tech. Soc., 26(4):20-26.

·         Howington, J.P., McFeters, G.A., Barry, J.P., Smith, J.J.  (1992)  Mapping the McMurdo Station sewage plume.  Mar. Poll. Bull., 25: 9-12


·         Barry, J.P. & Dayton, P.K.  (1991)  Physical Heterogeneity and the Community Organization of Marine Systems.  Pp 270-320 in: Ecological Heterogeneity, Springer Verlag, J. Kolasa & S. Pickett (eds.)

·         Grebmeier, J.M. & Barry, J.P.  (1991)  The influence of oceanographic processes on pelagic-benthic coupling in polar regions: a benthic perspective.  J. Mar. Sys., 2: 495-518.

·         Yoklavich, M.M., Cailliet, G.M., Barry, J.P., Ambrose, D.A., Antrim, B.S.  (1991)  Temporal and spatial patterns in abundance and diversity of fishes in Elkhorn Slough, California. Estuaries, 14:465-480


·         Barry, J.P. & Tegner, M.J.  (1990)  Inferring demographic processes from size frequency distributions: simple models indicate specific patterns of growth and mortality.  Fish. Bull., 88;13-19

·         Barry, J.P.  (1989)  Reproductive response of a marine annelid to winter storms: an analog to fire adaptation in plants?  Mar. Ecol. Prog. Ser., 54:99-107

·         Barry, J.P.  (1988)  Hydrographic patterns in McMurdo Sound, Antarctica and their relationship to biological productivity.  Polar Biol.,  8:377-391.

·         Barry, J.P. & Dayton, P.K.  (1988)  Current patterns in McMurdo Sound, Antarctica and their relationship to local biotic communities.  Polar Biol., 8:367-376.

·         Dayton, P.K., Watson, D., Pal­misano, A., Barry, J.P., Oliver, J.S., Rivera, D.  (1986)  Benthic microalgal standing stock and primary production at McMurdo Sound, Antarctica.  Polar Biol., 6:207-213.

·         Barry, J.P. & Cailliet, G.M.  (1981)  The utilization of shallow marsh habitats by commercially important fishes in Elkhorn Slough, California.  Cal-Neva Wildlife Trans. 1981:38-47.

·         Cailliet, G.M. & Barry, J.P.  (1978)  Com­parison of food array overlap measures useful in fish feeding habit analysis.  From the Proc.­ Second Pacific Northwest Tech. Work., October 10-13, 1978.  Maple Valley, Washington.


Publications & Contributions, Other

·         Barry, J.P. (2010). Marine organisms and ecosystems in a high-CO2 ocean, and An overview of recommendations from the NRC Committee Report on Development of an integrated science strategy for ocean acidification monitoring , research, and impacts assessment.  Written testimony for the April 22, 2010 U.S. Senate Hearing on The environmental and economic impacts of ocean acidification, held by the U.S. Senate Committee on Commerce, Science and Transportation (Oceans,  Atmosphere, Fisheries and Coast Guard Subcommittee)


·         Barry, J.P., Kuhnz, L., Buck, K., Lovera, C., Whaling, P.J. (2010).  Potential Impacts of the MARS Cable on the seabed and benthic faunal assemblages.  Report to: Monterey Bay National Marine Sanctuary.

·         Brewer, P.G. and Barry, J.P.  (2008)  Ocean acidification: The Other Carbon Dioxide Problem, Scientific American, commentary     

·         Barry, J.P., Pane, E.F., Brewer, P.G. (2006) Ocean Ecosystems and the Carbon Dioxide Invasion. Ecosystems Observations for the Monterey Bay National Marine Sanctuary. NOAA Monterey Bay National Marine Sanctuary.

·         Barry, J.P., Seibel, B.A., Drazen, J.C., Tamburri, M.N., Buck, K.R., Lovera, C., Kuhnz, L., Peltzer, E.T., Osborn, K., Whaling, P.J, Walz, P., Brewer, P.G. (2003) Deep-sea field experiments on the biological impacts of direct deep-sea CO2 injection.  Proceedings of the Second Annual Conference on Carbon Sequestration, May 5-8, 2003, Alexandria, VA.

·         Barry, J.P., Young, C., and Nelson, D.  (2001). Biological impacts of deep-sea CO2 sequestration, Report for CO2 sequestration workshop, MBARI, 2001.

·         Smith, K.L. Jr., Barry, J.P., Beaulieu, S.E., Priede, I.G., Robison, B.H., Shank, T.M., Wakefield, W.W. (2001), Real-time, long-term ecological studies in the deep ocean, report of working group for deep-sea ecological studies for NEPTUNE

·         DeVogelaere, A., Tamburri, M., Clague, D., Barry, J., and Benson, S. (2000).  Exploring the Davidson Seamount.  Pages 8 in: Ecosystem Observations for the Monterey Bay National Marine Sanctuary, NOAA Monterey Bay National Marine Sanctuary.

·         Dawe, T.C., D.S. Stakes, P.R. McGill, J. Barry, S. Etchemendy (1998).  Subsea Instrument deployments: methodology and techniques using a work class remotely operated vehicles (ROV).  Proceedings, 1998 Oceans Conference, Nice, France

·         Barry, J.P.  (1995). Ocean current observations near McMurdo Station, Antarctica, 1993 to 1994: Relation to wastewater discharge dispersal.  Idaho National Engineering Laboratory Report 95/0362, 104p.

·         Barry, J.P.  (1994). Ocean Current Observations near McMurdo Station, Antarctica from 1991 to 1993: Relation to Wastewater Discharge Dispersal.  Idaho National Engineering Laboratory Report EGG-CIET-11280, 100p

·         Barry, J.P. Robison, B.H., Greene, H.G., Baxter, C.H., Harrold, C., Kochevar, R.E., Orange, D., Lisin, S., Whaling, P.J., Nybakken, J.  (1993)  Investigations of cold seep communities in Monterey Bay, California, using a remotely operated vehicle.  American Academy of Underwater Science, 1993 Symposium Volume.

·         Lissner, A., Barry, J.P., Heilprin, D., Davison, D.  (1992)  Trawl and remotely operated vehicle ocean studies report for detailed physical and biological oceanographic studies for an ocean site designation effort under the marine protection, research and sanctuaries act of 1972 (MPRSA).  Prepared for U.S. Environmental Protection agency, EPA contract number 68-C8-0062.

·         Howington, J.P., Barry, J.P., Smith, J.J. & McFeters, G.A.  (1992)  Mapping the McMurdo Station sewage plume using bacterial indicators.  Ant. J. U. S.

·         Barry, J.P., Dunbar, R, Leventer-Reed, A., Dayton, P.K.  (1991)  Measurements of Ocean Currents in McMurdo Sound, Antarctica during the austral winter, 1989.  Ant. J. U. S.

·         Foster, M, Stellar, D., Barry J.P. (1990) Review of San Diego Gas and Electric Company (1989) Notice of Intention: The effects on the Marine Environment of the Proposed Changes (Combined Cycle) to Power Plants at Encina or South Bay.  Final report for the California Energy Commission on Agreements 700-89-012 and 700-89-014.  Report to: Mr. Richard Anderson, The California Energy Commission, 3600 Ashe Road, #17, Bakersfield, Ca.  93309.

·         Barry, J.P.  (1988)  Pattern and Process: Patch Dynamics in a Rocky Intertidal Community in Southern California.  Ph.D. Dissertation, Scripps Inst. of Oceanography, Univ. of California, San Diego, 335 pp.

·         ­Barry, J.P., Dayton, P.K.  (1986)  Oceanographic Influences on Marine Benthic Communities in McMurdo Sound, Antarctica.  Ant. J. U. S., 21:78.

·         Dayton, P.K., Kooyman, G., Barry, J.P.  (1984)  Benthic life under thick ice.  Ant. J. U. S., 19(5):128

·         Barry, J.P. (1983) Utilization of shallow marsh habitats by fishes in Elkhorn Slough, California.  Master's thesis, San Jose State University, San Jose, CA 95 pp.