MB-System Documentation

MB-System documentation

MB-System tutorial fragments 

  • A mbnavadjust cookbook tutorial with sample data by Christian dos Santos Ferreira, Krystle Anderson and David W. Caress is available here: MB-System mbnavadjust cook book (currently under construction)

MB-System cookbooks (significantly out of date)

    • The MB-System Cookbook tutorial documentation by Val Schmidt, Dale N. Chayes, and David W. Caress is available both as web pages and as a downloadable pdf document:

MB-System 5.0 Cookbook web pages

MB-System 5.0 Cookbook pdf file

Third-party bathymetry editor

  • A document providing guidance for integrating a third-party bathymetry editor with the MB-System processing environment can be accessed here:

Integrating third-party bathymetry editors with MB-System

Writing new data formats

  • A document providing guidance for supporting new data formats in MB-System can be accessed here:

Developer’s Guide to Writing an MB-System I/O Module

Data formats specifications

  • A few swath data format specifications made available to us can be viewed here:

Data format specifications from sonar vendors and other swath mapping sonar links.

How mapping sonars work

  • Documents concerning how mapping sonars work can be viewed here:

Some local and linked pages discussing how mapping sonars work.


Data repository
Data policy
Deep-Sea Guide
What is happening in Monterey Bay today?
Central and Northern California Ocean Observing System
Chemical data
Ocean float data
Slough data
Mooring ISUS measurements
Southern Ocean Data
Mooring data
M1 Mooring Summary Data
M1 Asimet
M1 download Info
M1 EMeter
Molecular and genomics data
ESP Web Portal
Seafloor mapping
Soundscape Listening Room
Upper ocean data
Spatial Temporal Oceanographic Query System (STOQS) Data
Image gallery
Video library
Creature feature
Deep-sea wallpapers
Previous seminars
David Packard Distinguished Lecturers
Research software
Video Annotation and Reference System
System overview
Data Use Policy
Video Tape User Guide
Video File User Guide
Annotation Glossary
Query Interface
Basic User Guide
Advanced User Guide
Query Glossary
VARS publications
VARS datasets used in publications
Oceanographic Decision Support System
MB-System seafloor mapping software
How to download and install MB-System
MB-System Documentation
MB-System Announcements
MB-System Announcements (Archive)
MB-System FAQ
MB-System Discussion Lists
MB-System YouTube Tutorials
Matlab scripts: Linear regressions
Introduction to Model I and Model II linear regressions
A brief history of Model II regression analysis
Index of downloadable files
Summary of modifications
Regression rules of thumb
Results for Model I and Model II regressions
Graphs of the Model I and Model II regressions
Which regression: Model I or Model II?
Matlab scripts: Oceanographic calculations
Matlab scripts: Sound velocity
Visual Basic for Excel: Oceanographic calculations
Educational resources
Navigating STEM careers
MBARI Summer Internship Program
2017 Summer Interns Blog
Education and Research: Testing Hypotheses (EARTH)
EARTH workshops
2016—New Brunswick, NJ
2015—Newport, Oregon
2016 Satellite workshop—Pensacola, FL
2016 Satellite workshop—Beaufort, NC
EARTH resources
EARTH lesson plans
Lesson plans—published
Lesson plans—development
Lesson drafts—2015
Lesson drafts—2016 Pensacola
Adopt-A-Float Program
Center for Microbial Oceanography: Research and Education (C-MORE) Science Kits
Science at home: Curriculum and resources
Sample archive
SciComm Resources