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2000

Naka, J., E. Takahashi, D.A. Clague, M.O. Garcia, T. Hanyu, E. Herrero-Bervera, J. Ishibashi, O. Ishizuka, K. Johnson, T. Kanamatsu, I. Kaneoka, P. Lipman, A. Malahoff, and G. McMurtry. 2000. Tectono-magmatic processes investigated at deep-water flanks of Hawaiian volcanoes. EOS, Transactions, 81: 221–227.

Nicol, S., T. Pauly, N.L. Bindoff, and P.G. Strutton. 2000. BROKE; a biological/oceanographic survey off the coast of East Antarctica (80°E-150°E) carried out in January–March 1996. Deep-Sea Research II, 47: 2281–2297. http://dx.doi.org/10.1016/S0967-0645(00)00026-6

Nicol, S., T. Pauly, N.L. Bindoff, S. Wright, D. Thiele, G.W. Hosie, P.G. Strutton, and E. Woehler. 2000. Ocean circulation off east Antarctica affects ecosystem structure and sea-ice extent. Nature, 406: 504–507. http://dx.doi.org/10.1038/35020053

O'Reilly, T. 2000. An object oriented approach to AUV software development. UUVs Conference at Southampton Oceanography Centre: 91–103.

Orphan, V.J., L.T. Taylor, D. Hafenbradl, and E.F. DeLong. 2000. Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Applied and Environmental Microbiology, 66: 700–711.

Paull, C.K., and R. Matsumoto. 2000. Leg 164 overview. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 3–10.

Paull, C.K., and W.P. Dillon. 2000. Natural gas hydrates: Occurrence, distribution, and detection. Geophysical Monograph, 124: 315.

Paull, C.K., R. Matsumoto, P. Wallace, and W.P. Dillon. 2000. Proceedings of the Ocean Drilling Project, Scientific Results, 164.

Paull, C.K., T.D. Lorenson, G. Dickens, W.S. Borowski, W. Ussler III, and K.A. Kvenvolden. 2000. Comparisons of In situ and core gas measurements in ODP Leg 164 bore holes. Gas hydrates: Challenges for the future, 912: 23–31.

Paull, C.K., T.D. Lorenson, W.S. Borowski, W. Ussler III, K. Olsen, and N.M. Rodriguez. 2000. Isotopic composition of CH4, CO2 species, and sedimentary organic matter within samples from the Blake Ridge: Gas source implications. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 67–78.

Paull, C.K., W. Ussler III, and W.P. Dillon. 2000. Potential role of gas hydrate decomposition in generating submarine slope failures. Natural Gas Hydrate in Oceanic and Permafrost Environments, 5: 149–156.

Peek, A.S., B.S. Gaut, R.A. Feldman, J.P. Barry, R.E. Kochevar, R.A. Lutz, and R.C. Vrijenhoek. 2000. Neutral and nonneutral mitochondrial genetic variation in deep sea clams from the family Vesicomyidae. Journal of Molecular Evolution, 50: 141–153.

Peltzer, E.T., and P.G. Brewer. 2000. Practical physical chemistry and empirical predictions of methane hydrate stability. Natural gas hydrate: In oceanic and permafrost environments: 17–28.

Pennington, J.T., and F.P. Chavez. 2000. Seasonal fluctuations of temperature, salinity, nitrate, chlorophyll and primary production at station H3/M1 over 1989-1996 in Monterey Bay, California. Deep-Sea Research II, 47: 947–973.

Rhodes, L.L., J. Adamson, and C.A. Scholin. 2000. Pseudo-nitzschia multistriata (Bacillariophyceae) in New Zealand. New Zealand Journal of Marine and Freshwater Research, 34: 463–467.

Robison, B.H. 2000. The coevolution of undersea vehicles and deep-sea research. Marine Technology Society Journal, 33: 69–73.

Rodriguez, N.M., and C.K. Paull. 2000. Data report: 14C dating of sediment of the uppermost Cape Fear slide plain: Constraints on the timing of this massive submarine landslide. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 325–327.

Rodriguez, N.M., C.K. Paull, and W.S. Borowski. 2000. Carbonate diagenetic zonations within gas hydrate-bearing sedimentatry sections on the Blake Ridge, offshore SE North America. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 301–312.

Scholin, C.A. 2000. Application of DNA probes for detection of harmful algae. Journal of Shellfish Research, 19: 637.

Scholin, C.A., F. Gulland, G.J. Doucette, S. Benson, M. Busman, F.P. Chavez, J. Cordaro, R. DeLong, A. De Vogelaere, J. Harvey, M. Haulena, K. Lefebvre, T. Lipscomb, S. Loscutoff, L.J. Lowenstine, R. Marin III, P.E. Miller, W.A. McLellan, P.D.R. Moeller, C.L. Powell, T. Rowles, P. Silvagni, M.W. Silver, T. Spraker, V. Trainer, and F.M. Van Dolah. 2000. Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature, 403: 80–84. http://dx.doi.org/10.1038/47481

Seibel, B.A., F.G. Hochberg, and D.B. Carlini. 2000. Life history of Gonatus onyx (Cephalopoda: Teuthoidea): Deep-sea spawning and post-spawning egg care. Marine Biology, 137: 519–526. http://dx.doi.org/10.1007/s002270000359

Sherlock, R.E., and B.H. Robinson. 2000. Effects of Temperature on the Development and Survival of Nanomia bijuga (Hydrozoa, Siphonophora). Invertebrate Biology, 119: 379–385.

Silguero, J.M.B., and B.H. Robison. 2000. Seasonal abundance and vertical distribution of mesopelagic calycophoran siphonophores in Monterey Bay, CA. Journal of Plankton Research, 22: 1139–1153. http://dx.doi.org/10.1093/plankt/22.6.1139

Strutton, P.G., and F.P. Chavez. 2000. Primary productivity in the equatorial Pacific during the 1997-98 El Niño. Journal of Geophyiscal Research, 105: 26089–26101.

Strutton, P.G., F.B. Griffiths, R.L. Waters, S.W. Wright, and N.L. Bindoff. 2000. Primary productivity off the coast of east Antarctica (80°E –150°E): January to March 1996. Deep-Sea Research II, 47: 2327–2362. http://dx.doi.org/10.1016/S0967-0645(00)00028-X

Suzuki, M.T., L.T. Taylor, and E.F. DeLong. 2000. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations employing 5'-nuclease assays. Applied and Environmental Microbiology, 66: 4605–4614.

Tamburri, M.N., E.T. Peltzer, G.E. Friederich, I. Aya, K. Yamane, and P.G. Brewer. 2000. A field study of the effects of CO2 ocean disposal on mobile deep-sea animals. Marine Chemistry, 72: 95–101. https://doi.org/10.1016/S0304-4203(00)00075-X

Trieloff, M., J. Kunz, D.A. Clague, D. Harrison, and C.J. Allègre. 2000. The nature of pristine noble gases in mantle plumes. Science, 288: 1036–1038.

Ussler III, W., C.K. Paull, and P.D. Fullagar. 2000. Pore-water strontium isotopes from the Leg 171B drilling transect down the Blake Spur. Proceedings of the Ocean Drilling Program, scientific results, 171B: 1–17.

Wagner, D., H.G. Greene, and C. Pridmore. 2000. Geologic map of the Monterey region.

Wallace, P.J., G.R. Dickens, C.K. Paull, and W. Ussler III. 2000. Effects of core retrieval and degassing on the carbon isotope composition of methane in gas hydrate- and free gas-bearing sediments from the Blake Ridge. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 101–112.

Wheat, C.G., H.W. Jannasch, J.N. Plant, C.L. Moyer, F.J. Sansone, and G.M. McMurtry. 2000. Continuous sampling of hydrothermal fluids from Loihi Seamount after the 1996 event. Journal of Geophysical Research - Solid Earth, 105: 19353–19368. http://dx.doi.org/10.1029/2000jb900088

Wilkerson, F.P., R.C. Dugdale, R.M. Kudela, and F.P. Chavez. 2000. Biomass and productivity in Monterey Bay, California: contribution of the large phytoplankton. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1003–1022. http://dx.doi.org/10.1016/S0967-0645(99)00134-4

Yoklavich, M.M., H.G. Greene, G.M. Cailliet, D.E. Sullivan, R.N. Lea, and M.S. Love. 2000. Habitat associations of deep-water rockfishes in a submarine canyon: An example of a natural refuge. Fishery Bulletin, 98: 625–641.

1999

Ahmad, A., J.P. Barry, and D.C. Nelson. 1999. Phylogenetic affinity of a wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon, California, with Thioploca spp. Applied and Environmental Microbiology, 65: 270–277.

Aiello, I.W., D.S. Stakes, M. Kastner, and R.E. Garrison. 1999. Carbonate vent structures in the upper Miocene Santa Cruz mudstone at Santa Cruz, California. Late Cenozoic fluid seeps and tectonics along the San Gregorio fault zone in the Monterey Bay region, California: 35–51.

Altabet, M.A., C.H. Pilskaln, R. Thunell, C. Pride, D. Sigman, F.P. Chavez, and R. Francois. 1999. The nitrogen isotope biogeochemistry of sinking particles from the margin of the eastern North Pacific. Deep-Sea Research I, 46: 655–679. http://dx.doi.org/10.1016/S0967-0637(98)00084-3

Baco, A.R., C.R. Smith, G.K. Roderick, A.S. Peek, and R.C. Vrijenhoek. 1999. Molecular identification of vesicomyid clams associated with whale-falls on the California Slope. Marine Ecology Progress Series, 182: 137–147.

Barry, J.P., and R.E. Kochevar. 1999. Calyptogena diagonalis, a new vesicomyid bivalve from subduction zone cold seeps in the eastern north Pacific. Veliger, 42: 117–123.

Bates, S.S., C. Scholin, M. Ferguson, and C. Leger. 1999. Application of ribosomal RNA targeted probes to detect Pseudo-nitzschia multiseries and P. pungens in Atlantic Canadian waters. Canadian Technical reports on fisheries and aquatic sciences, 2261: 63–67.

Begnaud, M.L., K.C. McNally, D.S. Stakes, and V.A. Gallardo. 1999. A new crustal velocity model for the Monterey Bay coastal region. Seismological Research Letters, 70: 238.

Blain, S., H. Jannasch, and K.S. Johnson. 1999. In situ chemical analyzers with colorimetric detection. Chemical sensors in oceanography: 49–70.

Borowski, W.S., C.K. Paull, and W. Ussler III. 1999. Global and local variations of interstitial sulfate gradients in deep-water, continental margin sediments: Sensitivity to underlying methane and gas hydrates. Marine Geology, 159: 131–154. http://dx.doi.org/10.1016/S0025-3227(99)00004-3

Brewer, P.G. 1999. Contemplating action: Storing carbon dioxide in the ocean. Roger Revelle Commemorative Lecture, 13: 15.

Brewer, P.G., F. Gernot, E.T. Peltzer, F.M. Orr Jr. 1999. Direct experiments on the ocean disposal of fossil fuel CO2. Science, 284: 943–945.

Burdige, D.J., W.M. Berelson, K.H. Coale, J. McManus, and K.S. Johnson. 1999. Fluxes of dissolved organic carbon from California continental margin sediments. Geochimica et Cosmochimica Acta, 63: 1507–1515. http://dx.doi.org/10.1016/S0016-7037(99)00066-6

Caron, D.A., E.L. Lim, M.R. Dennett, R.J. Gast, C. Kosman, and E.F. DeLong. 1999. Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas (Chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species. Journal of Phycology, 35: 824–837. http://dx.doi.org/10.1046/j.1529-8817.1999.3540824.x

Chaffey, M.R. 1999. Implementing a 4000 meter HDTV camera system. Oceans '99, 3: 1551.

Chavez, F.P., P.G. Strutton, G.E. Friederich, R.A. Feely, G.C. Feldman, D.G. Foley, and M.J. McPhaden. 1999. Biological and chemical response of the Equatorial Pacific Ocean to the 1997-98 El Niño. Science, 286: 2126–2131.

Clague, D.A., J.T. Hagstrum, D.E. Champion, and M.H. Beeson. 1999. Kilauea summit overflows: Their ages and distribution in the Puna District, Hawai'i. Bulletin of Volcanology, 61: 363–381. http://dx.doi.org/10.1007/s004450050279

DeLong, E.F. 1999. Diminutive cells in the oceans - unanswered questions. Size microorganisms: Proceedings of a workshop: 81–84.

DeLong, E.F., C. Schleper, R. Feldman, and R.V. Swanson. 1999. Application of genomics for understanding the evolution of hyperthemophilic and nonthermophilic Crenarchaeota. Biological Bulletin, 196: 363–366.

DeLong, E.F., L.T. Taylor, T.L. Marsh, and C.M. Preston. 1999. Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Applied and Environmental Microbiology, 65: 5554–5563.

Embley, R.W., W.W. Chadwick Jr., D.A. Clague, and D.S. Stakes. 1999. 1998 eruption of Axial Volcano: Multibeam anomalies and seafloor observations. Geophysical Research Letters, 26: 3425–3428.

Etchemendy, S., M. VandenBerg, R. Van Slyke, J. Morgan, and T. Leach. 1999. R/V Western Flyer operability and hull-strength upgrade. Ocean's '99, 1: 501–518.

Giver, K. 1999. Effects of the Invasive Seaweed Sargassum muticum on Native Marine Communities in Northern Puget Sound, Washington. Padilla Bay National Estuarine Research Reserve Reprint Series, 30: 93.

Goffredi, S.K., J.J. Childress, F.H. Lallier, and N.T. Desaulniers. 1999. The ionic composition of the hydrothermal vent tube worm Riftia pachyptila: Evidence for the elimination of SO2-4 and H+ and for a Cl-/HCO-3 shift. Physiological and Biochemical Zoology, 72: 296–306.

Goffredi, S.K., P.R. Girguis, J.J. Childress, and N.T. Desaulniers. 1999. Physiological functioning of carbonic anhydrase in the hydrothermal vent tubeworm Riftia pachyptila. Biological Bulletin, 196: 257–264. http://dx.doi.org/10.2307/1542950

Greene, H.G., M.M. Yoklavich, R. Starr, V.M. O'Connell, W.W. Wakefield, D.L. Sullivan, J.E. MacRea, and G.M. Cailliet. 1999. A classification scheme for deepwater seafloor habitats. Oceanographica Acta, 22: 663–678.

Greene, H.G., N. Maher, T. Naehr, and D. Orange. 1999. Fluid flow in the offshore Monterey Bay region. Pacific section AAPG, volume and guidebook: 1–19.

Grice, C.A. 1999. Marine snow patchiness studies using quantitative video. Marine Sciences, M.S.: 85.

Haddock, S.H.D., and J.F. Case. 1999. Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores. Marine Biology, 133: 571–582. http://dx.doi.org/10.1007/s002270050497

Hinrichs, K.U., J.M. Hayes, S.P. Sylva, P.G. Brewer, and E.F. DeLong. 1999. Methane-consuming archaebacteria in marine sediments. Nature, 398: 802–805. http://dx.doi.org/10.1038/19751

Hopcroft, R.R., and B.H. Robison. 1999. A new mesopelagic larvacean, Mesochordawis erythrocephalus, sp. nov., from Monterey Bay, with a description of its filtering house. Journal of Plankton Research, 21: 1923–1937.

Johnson, K.S. 1999. Shipboard and laboratory chemical analysis. The future of ocean chemistry in the U.S.: Report of the FOCUS workshop: 97–102.

Johnson, K.S., C. Reimers, and M. DeGrandpre. 1999. In situ chemical analysis. The future of ocean chemistry in the U.S.: Report of the FOCUS workshop: 89–95.

Johnson, K.S., F.P. Chavez, and G.E. Friederich. 1999. Continental-shelf sediment as a primary source of iron for coastal phytoplankton. Nature, 398: 697–700. http://dx.doi.org/10.1038/19511

Kent, A.J.R., D.A. Clague, M. Honda, E.M. Stolper, I.D. Hutcheon, and M.D. Norman. 1999. Widespread assimilation of a seawater-derived component at Loihi Seamount, Hawaii.

Maas, P.A.Y., G.D. O'Mullan, R.A. Lutz, and R.C. Vrijenhoek. 1999. Genetic and morphometric characterization of mussels (Bivalvia: Mytilidae) from Mid-Atlantic hydrothermal vents. Biological Bulletin, 196: 265–272. http://dx.doi.org/10.2307/1542951

Matsumoto, G.I. 1999. Coeloplana thomsoni sp. nov., a new benthic ctenophore (Ctenophora: Platyctenida: Coeloplanidae) from Western Australia. The seagrass flora and fauna of Rottnest Island, Western Australia: 385–393.

Matsumoto, G.I. 1999. Ctenophora. Encyclopedia of Reproduction, 1: 792–800.

McNeil, J., H. Jannasch, T. Dickey, D.J. McGillicuddy, Jr., M.A. Brzezinski, and C. Sakamoto. 1999. New chemical, bio-optical and physical observations of upper-ocean response to the passage of a mesoscale eddy off Bermuda. Journal of Geophyiscal Research, 104: 15537–15548. http://dx.doi.org/10.1029/1999jc900137

Miller, A.J., J.C. McWilliams, N. Schneider, J.S. Allen, J.A. Barth, R.C. Beardsley, F.P. Chavez, T.K. Chereskin, C.A. Edwards, R.L. Haney, K.A. Kelly, J.C. Kindle, L.N. Ly, J.R. Moisan, M.A. Noble, P.P. Niiler, L.Y. Oey, F.B. Schwing, R.K. Shearman, and M.S. Swenson. 1999. Observing and modeling the California Current System. EOS, 80: 533–539.

Mitchell, L. 1999. Quadrapod design - .25, .75 meter quadrapod base for a 28mm lens. The underwater catalog: A guide to methods in underwater research: 136–144.

Monterey Bay Aquarium Research Institute Mapping Team. 1999. Monterey Canyon Poster.

Monterey Bay Aquarium Research Institute, and National Science Foundation (U.S.). 1999. The future of ocean bottom seismology, 10–11 July 1997 at the Monterey Bay Aquarium Research Institute (MBARI). SIO reference series, 99-3: 55.

Moore, J.C., R.E. Garrison, I.W. Aiello, B.J. Thompson, D. Stakes, and K. Salamy. 1999. Modern and ancient fluid seep systems in the Monterey Bay region, California: Surface and subsurface observations. Pacific section AAPG, volume and guidebook: 93–117.

Murray, A.E., A. Blakis, R. Massana, S. Strawzewski, U. Passow, A. Alldredge, and E.F. DeLong. 1999. A time series assessment of planktonic archaeal variability in the Santa Barbara Channel. Aquatic Microbial Ecology, 20: 129–145. http://dx.doi.org/10.3354/ame020129

Murray, A.E., K.Y. Wu, C.L. Moyer, D.M. Karl, and E.F. DeLong. 1999. Evidence for circumpolar distribution of planktonic archaea in the southern ocean. Aquatic Microbial Ecology, 18: 263–273. http://dx.doi.org/10.3354/ame018263

Nähr, T.H., and G. Bohrmann. 1999. Barium-rich authigenic clinoptilolite in sediments from the Japan Sea - a sink for dissolved barium?. Chemical Geology, 158: 227–244.

Orange, D.L., H.G. Greene, D.L. Reed, J.B. Martin, C.M. McHugh, W.B.F. Ryan, N. Maher, D.S. Stakes, and J.P. Barry. 1999. Widespread fluid expulsion on a translational continental margin: Mud volcanoes, fault zones, headless canyons, and organic-rich substrate in Monterey Bay, California. Geological Society of America Bulletin, 111: 992–1009. http://dx.doi.org/10.1130/0016-7606(1999)111<0992_Wfeoat>2.3.Co;2

Parsons, M.L., C. Scholin, G.J. Doucette, G.A. Fryxell, Q. Dortch, and T.M. Soniat. 1999. Pseudo-nitzschia species (Bacillariophyceae) in Louisiana coastal waters: Molecular probe field trials, genetic variability and domoic acid analyses. Journal of Phycology, 35: 1368–1378. http://dx.doi.org/10.1046/j.1529-8817.1999.3561368.x

Paull, C.K., W. Ussler III, and W.S. Borowski. 1999. Freshwater ice rafting: an additional mechanism for the formation of some high-latitude submarine pockmarks. Geo-Marine Letters, 19: 164–168. http://dx.doi.org/10.1007/s003670050104

Paull, C.K., W. Ussler III, and W.S. Borowski. 1999. Origin of submarine pockmarks. Geo-Marine Letters, 19: 164–168.

Pennington, J.T., M.N. Tamburri, and J.P. Barry. 1999. Development, temperature tolerance, and settlement preference of embryos and larvae of the articulate brachiopod Laqueus californianus. Biological Bulletin, 196: 245–256. http://dx.doi.org/10.2307/1542949

Riemann, L., G.F. Steward, L.B. Fandino, L. Campbell, M. Landry, and F. Azam. 1999. Bacterial community composition during two consecutive NE monsoon periods in the Arabian Sea studied by denaturing gradient gel electrophoresis (DGGE) of rRNA genes. Deep Sea Research Part II: Topical Studies in Oceanography, 46: 1791–1811. http://dx.doi.org/10.1016/S0967-0645(99)00044-2

Robison, B.H., and J. Connor. 1999. The deep sea. Monterey Bay Aquarium Natural History Series: 80.

Ryan, J.P. 1999. Surfing the scientific wake of a merchant vessel. Maritimes, 41: 7–9.

Ryan, J.P., J.A. Yoder, and P.C. Cornillon. 1999. Enhanced chlorophyll at the shelfbreak of the Mid-Atlantic Bight and Georges Bank during the spring transition. Limnology and Oceanography, 44: 1–11.

Ryan, J.P., J.A. Yoder, J.A. Barth, and P.C. Cornillon. 1999. Chlorophyll enhancement and mixing associated with meanders of the shelf break front in the Mid-Atlantic Bight. Journal of Geophysical Research, 104: 23479–23493. http://dx.doi.org/10.1029/1999jc900174

Sandler, S.J., P. Hugenholtz, C. Schleper, E.F. DeLong, N.R. Pace, and A.J. Clark. 1999. Diversity of radA genes from cultured and uncultured Archaea: Comparative analysis of putatative radA proteins and their use as a phylogenetic marker. Journal of Bacteriology, 181: 907–915.