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2001

Tervalon, N., and W. Kirkwood. 2001. Ice profiling sonar for an AUV: an approach for obtaining SCICEX quality draft data. AUV Sensor Workshop.

Torres, M.E., J.P. Barry, D.A. Hubbard, and E. Suess. 2001. Reconstructing the history of fluid flow at cold seep sites from Ba/Ca ratios in vesicomyid clam shells. Limnology and Oceanography, 46: 1701–1708.

Trieloff, M., J. Kunz, D.A. Clague, D. Harrison, and C.J. Allegre. 2001. Reply to comment on "The nature of pristine noble gases in mantle plumes," by C.J. Ballentine, D. Porcelli, and R. Weiler. Science, 291: 2269.

Tyrrell, J.V., P.R. Bergquist, P.L. Bergquist, and C.A. Scholin. 2001. Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes. Phycologia, 40: 457–467. http://dx.doi.org/10.2216/i0031-8884-40-5-457.1

Van Slyke, R.J., J.M. Morgan, T.S. Leach, and S.A. Etchemendy. 2001. SWATH research vessel hull strength upgrade. Marine Technology, 38: 177–185.

Vecchione, M., R.E. Young, A. Guerra, D.J. Lindsay, D.A. Clague, J.M. Bernhard, W.W. Sager, A.F. Gonzalez, F.J. Rocha, and M. Segonzac. 2001. Worldwide observations of remarkable deep-sea squids. Science, 294: 2505–2506. http://dx.doi.org/10.1126/science.294.5551.2505

W. Ussler, III., and C.K. Paull. 2001. Ion exclusion associated with marine gas hydrate deposits. Natural gas hydrates: Occurrence, distribution, and detection, 124: 41–51.

Wilcox, J.S., J.G. Bellingham, Y. Zhang, and A.B. Baggeroer. 2001. Oceanographic surveys with autonomous underwater vehicles: Performance metrics and survey design. Journal of Oceanic Engineering, 26: 711–725.

Xu, W., R.P. Lowell, and E.T. Peltzer. 2001. Effect of seafloor temperature and pressure variations on methane flux from a gas hydrate layer: Comparison between current and late Paleocene climate conditions. Journal of Geophyiscal Research, 106: 26413–26423. http://dx.doi.org/10.1029/2001jb000420

Zhang, Y., A.B. Baggeroer, and J.G. Bellingham. 2001. Spectral feature classification of oceanographic processes using an autonomous underwater vehicle. IEEE Journal of Oceanic Engineering, 26: 726–741. http://dx.doi.org/10.1109/48.972115

2000

Barry, J.P., and N. Maher. 2000. Observation of the prickly shark, Echinorhinus cookei, from the oxygen minimum zone in Santa Barbara Basin, California. California Fish and Game, 86: 213–215.

Barry, J.P., K.R. Buck, S.K. Goffredi, and J. Hashimoto. 2000. Ultrastructure studies of two chemosynthetic invertebrate-bacterial symbioses (Lamellibrachia sp. and Acharax sp.) from the Hatsushima cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 16: 91–99.

Begnaud, M.L., and D.S. Stakes. 2000. Constraining continental margin seismicity by extending on-shore seismograph stations to critical off-shore sites. Bulletin of the Seismological Society of America, 90: 414–424. http://dx.doi.org/10.1785/0119990115

Begnaud, M.L., K.C. McNally, D.S. Stakes, and V.A. Gallardo. 2000. A crustal velocity model for locating earthquakes in Monterey Bay, California. Bulletin of the Seismological Society of America, 90: 1391–1408. http://dx.doi.org/10.1785/0120000016

Béjà, O., L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd, L. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, and E.F. DeLong. 2000. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science, 289: 1902–1906.

Béjà, O., M.T. Suzuki, E.V. Koonin, L. Aravind, A. Hadd, L.P. Nguyen, R. Villacorta, M. Amjadi, C. Garrigues, S.B. Jovanovich, R.A. Feldman, and E.F. DeLong. 2000. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environmental Microbiology, 2: 516–529.

Bellingham, J.G., J. Steitlien, J. Overland, S. Jajan, P. Stein, J. Stannard, W. Kirkwood, and D. Yoerger. 2000. An arctic basic observational capability using AUVs. Oceanography, 13.

Bernhard, J.M., K.R. Buck, M.A. Farmer, and S.S. Bowser. 2000. The Santa Barbara Basin is a symbiosis oasis. Nature, 403: 77–80. http://dx.doi.org/10.1038/47476

Borowski, W.S., and C.K. Paull. 2000. Nitrogen isotopic composition of pore-water ammoniuim, Blake Ridge, site 997, ODP Leg 164, Data Report. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 171–172.

Borowski, W.S., T.M. Hoehler, M.J. Alperin, N.M. Rodriguez, and C.K. Paull. 2000. Significance of anaerobic methane oxidation in methane-rich sediments overlying the Blake Ridge gas hydrates. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 87–99.

Brady, R., B. Wernicke, M.K. McNutt, J.C. Mutter, and G. Correa. 2000. Results of the Basin and Range Geoscientific Experiment (BARGE): A marine-style seismic reflection survey across the eastern boundary of the central Basin and Range province. Geochemistry, Geophysics, Geosystems: G3, 1.

Brewer, P.G. 2000. Chemical oceanography. Introduction to Earth systems: Processes and issues: 182–193.

Brewer, P.G. 2000. Gas hydrates and global climate change. Gas hydrates: Challenges for the future, 912: 195–199.

Brewer, P.G. 2000. Major international programs in Ocean Sciences: Ocean chemistry. 50 years of ocean discovery, 1950–2000: 152–161.

Brewer, P.G., and F.M. Orr Jr. 2000. CO2: The burning issue. Chemistry & Industry: 567–571.

Brewer, P.G., E.T. Peltzer, G. Friederich, I. Aya, and K. Yamane. 2000. Experiments on the ocean sequestration of fossil fuel CO2: pH measurements and hydrate formation. Marine Chemistry, 72: 83–93. https://doi.org/10.1016/S0304-4203(00)00074-8

Buck, K.R., J.P. Barry, and A.G.B. Simpson. 2000. Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Phycology, 36: 117–126.

Caress, D.W., and D.N. Chayes. 2000. MB-system version 4.6.10. Open source software distributed from the MBARI and L-DEO web sites MBARI, 2000.

Carlson, C.A., D.A. Hansell, E.T. Peltzer, and W.O. Smith Jr. 2000. Stocks and dynamics of dissolved and particulate organic matter in the southern Ross Sea, Antarctica. Deep-Sea Research II, 47: 3201–3225. http://dx.doi.org/10.1016/S0967-0645(00)00065-5

Chavez, F.P., and C.A. Collins. 2000. Corrigendum to "Studies of the California Current System Part 2"; [Deep-Sea Research II, 47 (5–6), 2000]. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1.

Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system part 2. Deep-Sea Research II, 47: 5–6.

Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system: Present, past and future. Deep-Sea Research II, 47: 761–763.

Clague, D.A., A.S. Davis, J.L. Bischoff, J.E. Dixon, and R. Geyer. 2000. Lava bubble-wall fragments formed by submarine hydrovolcanic explosions on Lo'ihi Seamount and Kilauea Volcano. Bulletin of Volcanology, 61: 437–449.

Clague, D.A., and J.E. Dixon. 2000. Extrinsic controls on the evolution of Hawaiian ocean island volcanoes. Geochemistry, Geophysics, Geosystems: G3, 1: 1010. http://dx.doi.org/10.1029/1999GC000023

Clague, D.A., J.R. Reynolds, and A.S. Davis. 2000. Near-ridge seamount chains in the northeastern Pacific Ocean. Journal of Geophysical Research, 105: 16541–16561. http://dx.doi.org/10.1029/2000JB900082

Davis, A.S., and D.A. Clague. 2000. President Jackson Seamounts, northern Gorda Ridge: Tectonomagmatic relationship between on- and off-axis volcanism. Journal of Geophysical Research, 105: 27939–27956. http://dx.doi.org/10.1029/2000jb900291

Davis, D.L. 2000. A data compression and sampling methodology for ocean observing systems. Oceans 2000: 1219–1225.

Dawson, S.C., E.F. DeLong, and N.R. Pace. 2000. Phylogenetic and ecological perspectives on uncultured Crenarchaeota and Korarchaeota.

De Grasse, T., N. McNutt, M. Kemper, B. Clinton, and H.R. Clinton. 2000. Exploration under the sea, beyond the stars. Millennium evenings at the White House.

Di Meo, C.A., A.E. Wilber, W.E. Holben, R.A. Feldman, R.C. Vrijenhoek, and S.C. Cary. 2000. Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Applied and Environmental Microbiology, 66: 651–658.

Dickens, G.R., and C.K. Paull. 2000. Technical appendix: Status of the Isothermal Decompression Analysis System (IDAS). Proceedings of the Ocean Drilling Program, Scientific Results, 164: 437–438.

Dickens, G.R., Borowski, W.S., Wehner, H., Paull, C.K., and ODP Leg 164 Scientific Party. 2000. Data report: Additional shipboard information for the pressure core sampler (PCS) at sites 994, 995, 996, and 997, Data Report. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 439–443.

Dickens, G.R., P.J. Wallace, C.K. Paull, and W.S. Borowski. 2000. Detection of methane gas hydrate in the pressure core sampler (PCS): Volume-pressure-time relations during controlled degassing experiments. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 113–126.

DiTullio, G.R., J. Grebmeier, K.R. Arrigo, M.P. Lizotte, D.H. Robinson, A. Leventer, J.P. Barry, M. VanWoert, and R.B. Dunbar. 2000. Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature, 404: 595–598. http://dx.doi.org/10.1038/35007061

Ducklow, H.W., M.L. Dickson, D.L. Kirchman, G. Steward, J. Orchardo, J. Marra, and F. Azam. 2000. Constraining bacterial production, conversion efficiency and respiration in the Ross Sea, Antarctica, January-February, 1997. Deep-Sea Research II, 47: 3227–3247. http://dx.doi.org/10.1016/S0967-0645(00)00066-7

Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of the Ross Sea Polynya ecosystem: Climatic forcing of polar primary and export productio. EOS, Transactions of the American Geophysical Union.

Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, L. Langone, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of production and C export in the Ross Sea Polyny. JGOFS symposium.

Eichhubl, P., and J.R. Boles. 2000. Rates of fluid flow in fault systems–evidence for episodic fluid flow in the Miocene Monterey Formation, coastal California. American Journal of Science, 300: 571–600. http://dx.doi.org/10.2475/ajs.300.7.571

Eichhubl, P., H.G. Greene, T.H. Naehr, and N. Maher. 2000. Structural control of fluid flow: Offshore fluid seepage in the Santa Barbara Basin, California. Journal of Geochemical Exploration, 69–70: 545–549. http://dx.doi.org/10.1016/S0375-6742(00)00107-2

Fitzwater, S.E., K.S. Johnson, R.M. Gordon, K.H. Coale, and W.O. Smith Jr. 2000. Trace metal concentrations in the Ross Sea and their relationship with nutrients and phytoplankton growth. Deep-Sea Research II, 47: 3159–3179. http://dx.doi.org/10.1016/S0967-0645(00)00063-1

Frey, F.A., D.A. Clague, J.J. Mahoney, and J.M. Sinton. 2000. Volcanism at the edge of the Hawaiian plume: Petrogenesis of submarine alkalic lavas from the North Arch Volcanic Field. Journal of Petrology, 41: 667–691. http://dx.doi.org/10.1093/petrology/41.5.667

Garrison, D.L., M.M. Gowing, M.P. Hughes, L. Campbell, D.A. Caron, M.R. Dennett, A. Shalapyonok, R.J. Olson, M.R. Landry, S.L. Brown, H.B. Liu, F. Azam, G.F. Steward, H.W. Ducklow, and D.C. Smith. 2000. Microbial food web structure in the Arabian Sea: a US JGOFS study. Deep-Sea Research II, 47: 1387–1422. http://dx.doi.org/10.1016/S0967-0645(99)00148-4

Gebruk, A.V., P. Chevaldonné, T. Shank, R.A. Lutz, and R.C. Vrijenhoek. 2000. Deep-sea hydrothermal vent communities of the Logatchev area (14°45'N, Mid-Atlantic Ridge): Diverse biotypes and high biomass. Journal of the Marine Biological Association of the United Kingdom, 80: 383–393.

Goyet, C., R. Healy, and J.P. Ryan. 2000. Global distribution of total inorganic carbon and total alkalinity below the deepest winter mixed layer depths: 40.

Greene, H.G., M.M. Yoklavich, V.W. O'Connell, W.W. Wakefield, Brylinsky, and G.M. Cailliet. 2000. Mapping and classification of deep seafloor habitats. ICES CM 2000/T:08: 10.

Harris, R.N., G. Garven, J. Georgen, M.K. McNutt, L. Christiansen, and R.P. Von Herzen. 2000. Submarine hyrdogeology of the Hawaiian archipelagic apron: Part 2, Numerical simulations of coupled heat transport and fluid flow. Journal of Geophysical Research, 105: 371–386.

Harris, R.N., R.P. Von Herzen, M.K. McNutt, G. Garven, and K. Jordahl. 2000. Submarine hydrogeology of the Hawaiian archipelagic apron: Part 1, Heat flow patterns north of Oahu and Maro Reef. Journal of Geophysical Research, 105: 353–369.

Hatcher, G.A., Jr., and N. Maher. 2000. Real-time GIS for marine applications [Monograph] Marine and coastal geographical information systems.

Hinrichs, K.U., R.E. Summons, V. Orphan, S.P. Sylva, and J.M. Hayes. 2000. Molecular and isotopic analysis of anaerobic methane-oxidizing communities in marine sediments. Organic Geochemistry, 31: 1685–1701. http://dx.doi.org/10.1016/S0146-6380(00)00106-6

Hoehler, T.M., W.S. Borowski, M.J. Alperin, N.M. Rodriguez, and C.K. Paull. 2000. Model, stable isotope, andn radiotracer characterization of anaerobic methane oxidation in gas hydrate-bearing sediments of the Blake Ridge. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 79–85.

Holder, G.D., and P.R. Bishnoi. Edited by C.W. Bryer, J.P. Monfort, Y.H. Mori, P.K. Notz, C.K. Paull, J. Ripmeester, E.D. Sloan, P.S. Somasundaran, M.H. Youssif, and R. Warinski. 2000. Gas Hydrates: Challenges for the Future, 912: 1044.

Hunt, J.C., and B.A. Seibel. 2000. Life history of Gonatus onyx (Cephalopoda: Teuthoidea): ontogenetic changes in habitat, behavior and physiology. Marine Biology, 136: 543–552. http://dx.doi.org/10.1007/s002270050714

Hunt, J.C., L.D. Zeidberg, W.M. Hamner, and B.H. Robison. 2000. The behaviour of Loligo opalescens (Mollusca: Cephalopoda) as observed by a remotely operated vehicle (ROV). Journal of the Marine Biological Association of the United Kingdom, 80: 873–883.

Johnson, K.S., and R. Byrne. 2000. Modern autonomous observing systems. Ocean Carbon Transport, Exchanges and Transformations, Proceedings of a Workshop: 41–55.

Johnson, K.S., V.A. Elrod, J.L. Nowicki, K.H. Coale, and H. Zamzow. 2000. Continuous flow techniques for on site and in situ measurements of metals and nutrients in sea water. In situ monitoring of aquatic systems: Chemical analysis and speciation: 223–252.

Kastens, K., E. Bonatti, D. Caress, G. Carrara, O. Dauteuil, G. Frueh-Green, and M. Ligi. 2000. The Vema transverse ridge (Central Atlantic). Marine Geophysical Researches: 20: 533–556.

Kastner, M., B. Carson, D.B. Bartlett, J. Jaeger, K. Bidle, and H. Jannasch. 2000. An in situ experiment of methane sewquestration as gas hydrate, authigenic carbonate, and loss to the water column and/or atmosphere. Gas Hydrates: Challenges for the Future: 32–37.

Kirkwood, W.J. 2000. Tiburon: MBARI's New ROV Integrated to a SWATH R/V. Sea Technology, 41: 51–55.

Kudela, R.M., and F.P. Chavez. 2000. Modeling the impact of the 1992 El Nino on new production in Monterey Bay, California. Deep-Sea Research Part II: Topical Studies in Oceanography, 47: 1055–1076. http://dx.doi.org/10.1016/S0967-0645(99)00136-8

Massana, R., E.F. DeLong, and C. Pedrós-Alió. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Applied and Environmental Microbiology, 66: 1777–1787.

Matthews, M.B. 2000. On the linear minimum-mean-squared-error estimatin of an undersampled wide-sense stationary random process. IEEE Transactions on Signal Processing, 48: 272–275.

McCann, M. 2000. Remotely Operated Vehicle (ROV) dive visualization. Computer Graphics, 34: 51.

McNutt, M.K. 2000. Achievements in marine geology and geophysics. 50 years of ocean discovery: National Science Foundation, 1950–2000: 51–64.

McNutt, M.K. 2000. Discovering Earth's final frontier: A U.S. strategy for ocean exploration: The report of the President's Panel on Ocean Exploration: 61.

McNutt, M.K. 2000. Heat flow variations over Hawaiian swell controlled by near-surface processes, not plume properties. Evolution of Hawaiian Volcanoes, Geophysical Monograph, AGU.

McNutt, M.K. 2000. The future of marine geology and geophysics: A summary. 50 years of ocean discovery: National Science Foundation, 1950–2000: 172–183.

McNutt, M.K., and A. Bonneville. 2000. A shallow, chemical origin for the Marquesas Swell. Geochemistry, Geophysics, Geosystems: G3, 1.

Mellinger, D.K., and C.W. Clark. 2000. Recognizing transient low-frequency whale sounds by spectrogram correlation. Journal of the Acoustical Society of America, 107: 3518–3529.

Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia (Bacillariophyceae) species using whole cell hybridization: Sample fixation and stability. Journal of Phycology, 36: 251–265.

Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia species using rRNA-targeted probes: Sample fixation and stability. Journal of Phycology, 36: 238–250.

Naehr, T.H., N.M. Rodriguez, G. Bohrmann, C.K. Paull, and R. Botz. 2000. Methane-derived authigenic carbonates associated with gas hydrate decomposition and fluid venting above the Blake Ridge Diapir. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 285–300.

Naka, J., E. Takahashi, D.A. Clague, M.O. Garcia, T. Hanyu, E. Herrero-Bervera, J. Ishibashi, O. Ishizuka, K. Johnson, T. Kanamatsu, I. Kaneoka, P. Lipman, A. Malahoff, and G. McMurtry. 2000. Tectono-magmatic processes investigated at deep-water flanks of Hawaiian volcanoes. EOS, Transactions, 81: 221–227.

Nicol, S., T. Pauly, N.L. Bindoff, and P.G. Strutton. 2000. BROKE; a biological/oceanographic survey off the coast of East Antarctica (80°E-150°E) carried out in January–March 1996. Deep-Sea Research II, 47: 2281–2297. http://dx.doi.org/10.1016/S0967-0645(00)00026-6

Nicol, S., T. Pauly, N.L. Bindoff, S. Wright, D. Thiele, G.W. Hosie, P.G. Strutton, and E. Woehler. 2000. Ocean circulation off east Antarctica affects ecosystem structure and sea-ice extent. Nature, 406: 504–507. http://dx.doi.org/10.1038/35020053

O'Reilly, T. 2000. An object oriented approach to AUV software development. UUVs Conference at Southampton Oceanography Centre: 91–103.

Orphan, V.J., L.T. Taylor, D. Hafenbradl, and E.F. DeLong. 2000. Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Applied and Environmental Microbiology, 66: 700–711.

Paull, C.K., and R. Matsumoto. 2000. Leg 164 overview. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 3–10.

Paull, C.K., and W.P. Dillon. 2000. Natural gas hydrates: Occurrence, distribution, and detection. Geophysical Monograph, 124: 315.

Paull, C.K., R. Matsumoto, P. Wallace, and W.P. Dillon. 2000. Proceedings of the Ocean Drilling Project, Scientific Results, 164.

Paull, C.K., T.D. Lorenson, G. Dickens, W.S. Borowski, W. Ussler III, and K.A. Kvenvolden. 2000. Comparisons of In situ and core gas measurements in ODP Leg 164 bore holes. Gas hydrates: Challenges for the future, 912: 23–31.