MBARI publications

2019

Smith Jr., K.L., Huffard, C.L., McGill, P.R., Sherman, A.D., Connolly, T.P., Von Thun, S., Kuhnz, L.A., (2019). Gelatinous zooplankton abundance and benthic boundary layer currents in the abyssal Northeast Pacific: A three-year time series study. Deep Sea Research Part II Topical Studies in Oceanography : . https://doi.org/10.1016/j.dsr2.2019.104654
Ryan, J.P., Cline, D.E., Joseph, J.E., Margolina, T., Santora, J.A., Kudela, R.M., Chavez, F.P., Pennington, J.T., Wahl, C., Michisaki, R., Benoit-Bird, K.J., Forney, K.A., Stimpert, A.K., DeVogelaere, A., Black, N., Fischer, M., (2019). Humpback whale song occurrence reflects ecosystem variability in feeding and migratory habitat of the northeast Pacific. PLoS ONE, 14: 1-24. https://doi.org/10.1371/journal.pone.0222456
Gwiazda, R.H., Paull, C, K., Caress, D., Preston, C.M., Johnson, S.B., Lundsten, E., Anderson, K., (2019). The extent of fault-associated modern authigenic barite deposits offshore Northern Baja California revealed by high resolution mapping. Frontiers in Marine Science : . http://doi.org10.3389/fmars.2019.00460
Kuhnz, L.A., Bizzarro, J.J., Ebert, D.A., (2019). In situ observations of deep-living skates in the eastern North Pacific. Deep Sea Research Part I: Oceanographic Research Papers : . https://doi.org/10.1016/j.dsr.2019.103104
Boch, C.A., DeVogelaere, A., Burton, E., King, C.E., Lord, J.P., Lovera, C., Litvin, S.Y., Kuhnz, L., Barry, J.P., (2019). Coral translocation as a method to restore impacted deep-sea coral communities. Frontiers in Marine Science, 6: 1-10. https://doi.org/10.3389/fmars.2019.00540
Roemmich, D., Alford, M.H., Claustre, H., Johnson, K., King, B., Moum, J., Oke, P., Owens, W.B., Pouliquen, S. , Purkey, S., Scanderbeg, M., Suga, T., Wijffels, S., Zilberman, N., Bakker, D., Baringer, M., Belbeoch, M., Bittig, H.C., Boss, E., Calil, P., Carse, F., Carval, T., Chai, F., Conchubhair, D.O., d'Ortenzio, F., Dall'Olmo, G., Desbruyeres, D., Fennel, K., Fer, I., Ferrari, R., Forget, G., Freeland, H. , Fujiki, T., Gehlen, M., Greenan, B., Hallber, R., Hibiya, T., Hosoda, S., Jayne, S. , Jochum, M. , Johnson, G.C., Kang, K., Kolodziejczyk, N., Kortzinger, A., Le Traon. P.-Y., Lenn, Y.-D., Maze, G., Mork, K.A., Morris, T., Nagai, T., Nash, J., Garabato, A.N., Olsen, A., Pattabhi, R.R., Prakash, S., Riser, S., Schmechtig, C., Schmid, C., Shroyer, E., Sterl, A. , Sutton, P., Talley, L. D., Tanhua, T., Thierry, V., Thomalla, S., Toole, J., Troisi, A., Trull, T.W., Turton, J., Velez-Belchi, P.J., Walczowski, W., Wang, H., Wanninkhof, R., Waterhouse, A.F., Waterman, S., Watson, A., Wilson, C., Wong, A.P.S., Xu, J., Yasuda, I., (2019). On the future of Argo: A global, full-depth, multi-disciplinary array. Frontiers in Marine Science, 6: 1-28. https://doi.org/10.3389/fmars.2019.00439
Lindsey, N.J., Dawe, C., Ajo-Franklin, J.B., (2019). Photonic seismology in Monterey Bay: Dark fiber DAS illuminates offshore faults and coastal ocean dynamics. EarthArXiv : . https://doi.org/10.31223/osf.io/7bf92
Breusing, C., Johnson, S.B., Vrijenhoek, R C, Young, C.R., (2019). Host hybridization as a potential mechanism of lateral symbiont transfer in deep‐sea vesicomyid clams. Molecular Ecology : . https://doi.org/10.1111/mec.15224
Priede, I.G., Drazen, J.C., Bailey, D.M., Kuhnz, L.A., Fabian, D., (2019). Abyssal demersal fishes recorded at station M (34°50′N, 123° 00′W, 4100 m depth) in the northeast Pacific Ocean: An annotated check list and synthesis. Deep Sea Research Part II: Topical Studies in Oceanography : . https://doi.org/10.1016/j.dsr2.2019.104648
Morse, P., Huffard, C.L., (2019). Tactical tentacles: New insights on the processes of sexual selection among the Cephalopoda. Frontiers in Physiology, 10: 1-26. https://doi.org/10.3389/fphys.2019.01035
Claustre, H., Johnson, K.S., Takeshita, Y., (2019). Observing the global ocean with Biogeochemical-Argo. Annual Review of Marine Science, 12: . https://doi.org/10.1146/annurev-marine-010419-010956
Leys, S. P., Mah, J.L., McGill, P.R., Hamonic, L., De Leo, F.C., Kahn, A. S., (2019). Sponge behavior and the chemical basis of responses: A post-genomic view. Integrative and Comparative Biology : 1-14. https://doi.org/10.1093/icb/icz122
Reji, L., Tolar, B.B., Smith, J.M., Chavez, F.P., Francis, C.A., (2019). Depth distributions of Nitrite Reductase (nirK) Gene Variants Reveal Spatial Dynamics of Thaumarchaeal Ecotype Populations in Coastal Monterey Bay. Environmental Microbiology : . https://doi.org/10.1111/1462-2920.14753
Zhang, Y., Ryan, J.P., Kieft, B., Hobson, B.W., McEwen, R.S., Godin, M.A., Harvey, J.B., Barone, B., Bellingham, J.G., Birch, J.M., Scholin, C.A., Chavez, F.P., (2019). Targeted sampling by autonomous underwater vehicles. Frontiers in Marine Science, 6: 1-12. https://doi.org/10.3389/fmars.2019.00415
Choy, C. A., Robison, B.H., Gagne, T.O., Erwin, B.E., Firl, E., Halden, R.U., Hamilton, J. A., Katija, K., Lisin, S.E., Rolsky, C., Van Houtan, K.S., (2019). The vertical distribution and biological transport of marine microplastics across the epipelagic and mesopelagic water column. Scientific Reports, 9: . https://doi.org/10.1038/s41598-019-44117-2
Le Saout, M., Clague, D.A, Paduan, J.B., (2019). Evolution of fine-scale segmentation at intermediate-spreading rate ridges. Geochemistry Geophysics Geosystems : . https://doi.org/10.1029/2019GC008218
Zhang, Z., Robison, B.H., Ramanathan, S., (2019). Marine biology requires a new line of inquiry in materials research. MRS Bulletin, 44: 597-599. https://doi.org/10.1557/mrs.2019.186
Grant, N., Matveev, E., Kahn, A. S., Archer, S.K., Dunham, A., Bannister, R.J., Eerkes-Medrano, D., Leys, S. P., (2019). Effect of suspended sediments on the pumping rates of three species of glass sponge in situ. Marine Ecology Progress Series, 615: 79-100. https://doi.org/10.3354/meps12939
Winnikoff, J.R., Francis, W. R., Thuesen, E.V., Haddock, S.H.D., (2019). Combing transcriptomes for secrets of deep-sea survival: Environmental diversity drives patterns of protein evolution. Integrative and Comparative Biology : . https://doi.org/10.1093/icb/icz063
Bushinsky, S.M., Takeshita, Y., Williams, N.L., (2019). Observing changes in ocean carbonate chemistry: Our autonomous future. Current Climate Change Reports : 1-14. https://doi.org/10.1007/s40641-019-00129-8
Djapic, V., Curtin, T.B., Kirkwood, W.J., Potter, J.R., Cruz, N.A., (2019). Guest editorial pushing for higher autonomy and cooperative behaviors in maritime robotics. IEEE Journal of Oceanic Engineering, 44: 286-289. https://doi.org/10.1109/JOE.2019.2899541
Fox, M.D., Carter, A.L., Edwards, C.B., Takeshita, Y., Johnson, M.D., Petrovic, V., Amier, C.G., Sala, E., Sandin, S.A., Smith, J.E., (2019). Limited coral mortality following acute thermal stress and widespread bleaching on Palmyra Atoll, central Pacific. Coral Reefs : 1-12. https://doi.org/10.1007/s00338-019-01796-7
Haskell II , W.Z., Hammond, D.E., Prokopenko, M.G., Teel, E.N., Seegers, B.N., Ragan, M.A., Rollins, N., Jones, B.H., (2019). Net community production in a productive coastal ocean from an autonomous buoyancy-driven glider. Journal of Geophysical Research: Oceans : . https://doi.org/10.1029/2019JC015048
Barton, M.B., Litvin, S.Y., Vollenweider, J.J., Heintz, R.A., Norcross, B.L., Boswell, K.M., (2019). Implications of trophic discrimination factor selection for stable isotope food web models of low trophic levels in the Arctic nearshore. Marine Ecology Progress Series, 613: 211-216. https://doi.org/10.3354/meps12893
Zhang, Y., Kieft, B., Hobson, B., Ryan, J.P., Barone, B., Preston, C.M., Roman, B., Raanan, B.Y., Marin III, R., O'Reilly, T.C., Rueda, C.A., Pargett, D., (2019). Autonomous Tracking and Sampling of the Deep Chlorophyll Maximum Layer in an Open-Ocean Eddy by a Long-Range Autonomous Underwater Vehicle. IEEE Journal of Oceanic Engineering : . https://doi.org/10.1109/JOE.2019.2920217
Yamahara, K.M., Preston, C.M., Birch, J., Walz, K. R., Marin III, R., Jensen, S., Pargett, D., Roman, B., Ussler III, W., Zhang, Y., Ryan, J., Hobson, B., Kieft, B., Raanan, B.Y., Goodwin, K.D., Chavez, F.P., Scholin, C.A., (2019). In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Frontiers in Marine Science, 6: 1-14. https://doi.org/10.3389/fmars.2019.00373
Kolody, B.C., McCrow, J. P., Zeigler Allen, L., Aylward, F.O., Fontanez, K.M., Moustafa, A., Moniruzzaman, M., Chavez, F.P., Scholin, C.A., Allen, E. E., Worden, A. Z., DeLong, E.F., Allen, A. E., (2019). Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME Journal : 1-17. https://doi.org/10.1038/s41396-019-0472-2
Aguzzi, J., Chatzievangelou, D., Marini, S., Fanelli, E., Danovaro, R., Flögel, S., Lebris, N., Juanes, F., De Leo, F.C., Del Rio, J., Thomsen, L. , Costa, C., Riccobene, G., Tamburini, C., Lefevre, D., Gojak, C., Poulain, P.M., Favali, P., Griffa, A., Purser, A., Cline, D., Edgington, D., Navarro, J., Stefanni, S., D'Hondt, S.L., Priede, I.G., Rountree, R., Company, J.B., (2019). New High-Tech Flexible Networks for the Monitoring of Deep-Sea Ecosystems. Environmental Science & Technology, 53: 6616-6631. https://doi.org/10.1021/acs.est.9b00409
Barton, M.B., Litvin, S.Y., Vollenweider, J.J., Heintz, R.A., Norcross, B.L., Boswell, K.M., (2019). Experimental determination of tissue turnover rates and trophic discrimination factors for stable carbon and nitrogen isotopes of Arctic Sculpin (Myoxocephalus scorpioides): A common Arctic nearshore fish. Journal of Experimental Marine Biology and Ecology, 511: 60-67. https://doi.org/10.1016/j.jembe.2018.11.005
Béguelin, P., Bizimis, M., McIntosh, E.C., Cousens, B., Clague, D.A., (2019). Sources vs processes: Unraveling the compositional heterogeneity of rejuvenated-type Hawaiian magmas. Earth and Planetary Science Letters, 514: 119-129. https://doi.org/10.1016/j.epsl.2019.03.011
Carter, B.R., Williams, N.L., Evans, W., Fassbender, A.J., Barbero, L., Hauri, C., Feely, R.A., Sutton, A.J., (2019). Time-of-detection as a metric for prioritizing between climate observation quality, frequency, and duration. Geophysical Research Letters, 46: 3853-3861. https://doi.org/10.1029/2018GL080773
Chen, T.-T., Paull, C, K., Liu, C.-S., Klaucke, I., Hsu, H.-H., Su, C.-C., Gwiazda, R., Caress, D.W., (2019). Discovery of numerous pingos and comet-shaped depressions offshore southwestern Taiwan. Geo-Marine Letters : . https://doi.org/10.1007/s00367-019-00577-z
Clague, D.A., Paduan, J.B., Caress, D.W., Moyer, C.L., Glazer, B.T., Yoerger, D.R., (2019). Structure of Lo‘ihi Seamount, Hawai'i and lava flow morphology from high-resolution mapping. Frontiers in Earth Science, 7: . https://doi.org/10.3389/feart.2019.00058
Georgieva, M.N., Paull, C. K., Little, C.T.S., McGann, M., Sahy, D., Condon, D., Lundsten, L., Pewsey, J., Caress, D.W., Vrijenhoek, R. C., (2019). Discovery of an extensive deep-sea fossil serpulid reef associated with a cold seep, Santa Monica Basin, California. Frontiers in Marine Science, 6: . https://doi.org/10.3389/fmars.2019.00115
Johnson, K.S., Riser, S.C., Ravichandran, M., (2019). Oxygen variability controls denitrification in the Bay of Bengal oxygen minimum zone. Geophysical Research Letters, 46: 804-811. https://doi.org/10.1029/2018GL079881
Kemp, M., (2019). Underwater thruster fault detection and isolation. AIAA Scitech Forum : . https://doi.org/10.2514/6.2019-1959
Lord, J.P., Harper, E.M., Barry, J.P., (2019). Ocean acidification may alter predator-prey relationships and weaken nonlethal interactions between gastropods and crabs. Marine Ecology Progress Series, 616: 83-94. https://doi.org/10.3354/meps12921
Maschmeyer, C.H., White, S.M., Dreyer, B.M., Clague, D.A, (2019). High-Silica Lava Morphology at Ocean Spreading Ridges: Machine-Learning Seafloor Classification at Alarcon Rise. Geosciences, 9: 1-21. https://doi.org/10.3390/geosciences9060245
Maier, K. L., Gales, J.A., Paull, C, K., Rosenberger, K.J., Talling, P.J., Simmons, S.M., Gwiazda, R., McGann, M., Cartigny, M.J.B., Lundsten, E., Anderson, K., Clare, M.A., Xu, J., Parsons, D., Barry, J.P., Wolfson-Schwehr, M., Nieminski,, N.M., Sumner, E.J., (2019). Linking Direct Measurements of Turbidity Currents to Submarine Canyon-Floor Deposits. Frontiers in Earth Science, 7: 1-18. https://doi.org/10.3389/feart.2019.00144
Messié, M., Shulman, I., Martini, S, Haddock, S., (2019). Using fluorescence and bioluminescence sensors to characterize auto- and heterotrophic plankton communities. Progress in Oceanography, 171: 76-92. https://doi.org/10.1016/j.pocean.2018.12.010
Northcott, D., Sevadjian, J., Sancho-Gallegos, D.A.., Wahl, C., Friederich, G., Chavez, F.P., (2019). Impacts of urban carbon dioxide emissions on sea-air flux and ocean acidification in nearshore waters. PLoS ONE, 14: . https://doi.org/10.1371/journal.pone.0214403
Reji, L., Tolar, B.B., Smith, J.M., Chavez, F.P., Francis, C.A., (2019). Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column. The ISME Journal, 13: 1144-1158. https://doi.org/10.1038/s41396-018-0311-x
Zhang, D., Cronin, M.F., Lin, X., Inoue, R., Fassbender, A.J., Bishop, S.P., Sutton, A.J., (2019). Observing air-sea interaction in the western boundary currents and their extension regions: Considerations for OceanObs'19. Frontiers in Western Boundary Current Research, 15: 23-30. http://dx.doi.org/10.5065/D6SJ1JB2
Zhang, Y., Rueda, C., Kieft, B., Ryan, J.P., Wahl, C., O'Reilly, T.C., Maughan, T., Chavez, F.P., (2019). Autonomous tracking of an oceanic thermal front by a Wave Glider. Journal of Field Robotics : 1-15. https://doi.org/10.1002/rob.21862
Zimmerman, R.C., Bachy, C., Ma, X., Roux, S., Jang, H.B., Sullivan, M.B., Waldbauer, J.R., Worden, A. Z., (2019). Closely related viruses of the marine picoeukaryotic alga Ostreococcus lucimarinus exhibit different ecological strategies. Environmental Microbiology, 21: 2148-2170. https://doi.org/10.1111/1462-2920.14608

2018

Albright, R., Takeshita, Y., Koweek, D.A., Ninokawa, A., Wolfe, K., Rivlin, T., Nebuchina, Y., Young, J., Caldeira, K, (2018). Carbon dioxide addition to coral reef waters suppresses net community calcification. Nature, 555: 516-519. http://doi.org/10.1038/nature25968
Archer, S.K., Kahn, A. S., Leys, Sally P., Norgard, T., Girard, F., Du Preez, C., Dunham, A., (2018). Pyrosome consumption by benthic organisms during blooms in the NE Pacific and Gulf of Mexico. Ecology, 99: 981-984. https://doi.org/10.1002/ecy.2097
Ardron, J.A., Ruhl, H.A., Jones, D.O.B., (2018). Incorporating transparency into the governance of deep-seabed mining in the area beyond national jurisdiction. Marine Policy, 89: 58-66. https://doi.org/10.1016/j.marpol.2017.11.021
Arranz, P., Benoit-Bird, K.J., Southall, B.L., Calambokidis, J., Friedlander, A.S., Tyack, P.L., (2018). Risso's dolphins plan foraging dives. Journal of Experimental Biology : . https://doi.org/10.1242/jeb.165209
Arteaga, L., Haëntjens, N., Boss, E.S., Johnson, K.S., Sarmiento, J. L., (2018). Assessment of export efficiency equations in the Southern Ocean applies to satellite-based net primary production. Journal of Geophyiscal Research: Oceans, 123: 2945-2964. https://doi.org/10.1002/2018JC013787
Babonis, L., Debiasse, M.B., Francis, W. R., Christianson, L. M., Haddock, S.H.D., Martindale, M. Q., Ryan, J.F., (2018). Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution, 35: 2940-2956. https://doi.org/10.1093/molbev/msy171
Bachy, C., Charlesworth, C.J., Chan, A.M., Finke, F.J., Wong, C. -. H., Wei, C.-L., Sudek, S., Coleman, M.L., Suttle, C.A., Worden, A. Z., (2018). Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environmental Microbiology, 20: 2898-2912. https://doi.org/10.1111/1462-2920.14273
Benoit-Bird, K.J., Welch, T.P., Waluk, C.M., Barth, J.A., Wangen, I., McGill, P., Okuda, C., Hollinger, G.A., Sato, M., McCammon, S., (2018). Equipping an underwater glider with a new echosounder to explore ocean ecosystems. Limnology and Oceanography: Methods, 16: 734-749. https://doi.org/10.1002/lom3.10278
Birch, J.M., (2018). Collecting and processing samples in remote and dangerous places: The environmental sample processor as a case study. Pure and Applied Chemistry, 90: 1625-1630. https://doi.org/10.1515/pac-2018-0201
Birch, J.M., Barone, B., DeLong, E., Foreman, G., Gomes, K., Hobson, B., Jensen, S., Karl, D.M., Kieft, B., O'Reilly, T., Pargett, D., Preston, C., Roman, B., Romano, A., Ryan, J., Scholin, C.A., Ussler, W., Yamahara, K., Zhang, Y., (2018). Autonomous targeted sampling of the deep chlorophyll maximum layer in a subtropical north Pacific eddy. Oceans 2018 MTS/IEEE : 5. http://dx.doi.org/10.1109/OCEANS.2018.8604898
Bowers, H.A., Ryan, J.P., Hayashi, K., Woods, A.L., Marin III, R., Smith, G.J., Hubbard, K.A., Doucette, G., Mikulski, C., Gellene, A. G., Zhang, Y., Kudela, R., Caron, D., Birch, J., Scholin, C., (2018). Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling. Harmful Algae, 78: 129-141. https://doi.org/10.1016/j.hal.2018.08.006
Branch, A., Flexas, M.M., Claus, B., Thompson, A.F., Zhang, Y., Clark, E.B., Chien, S., Fratantoni, D., Kinsey, J.C., Hobson, B., Kieft, B., Chavez, F.P., (2018). Front delineation and tracking with multiple underwater vehicles. Journal of Field Robotics : . https://doi.org/10.1002/rob.21853
Breitburg, D., Levin, L.A., Oschlies, A., Grégoire, M., Chavez, F.P., Conley, D.J., Garçon, V., Gilbert, D., Gutiérrez, D., Isensee, K., Jacinto, G.S., Limburg, K.E., Montes, I., Naqvi, S.W.A., Pitcher, G.C., Rabalais, N.N., Roman, M.R., Rose, K.A., Seibel, B.A., Telszewski, M., Yasuhara, M., Zhang, J., (2018). Declining oxygen in the global ocean and coastal waters. Science, 359: 13. https://doi.org/10.1126/science.aam7240
Brewer, P.G. , Peltzer, E.T., Walz, P.M., (2018). How much H2O is there in the ocean? The structure of water in sea water. Journal of Geophyiscal Research: Oceans, 124: 212-226. https://doi.org/10.1029/2018JC014457
Burford, B.P., Schlining, K.L., Reisenbichler, K.R., Robison, B.H., (2018). Pelagic shrimp play dead in deep oxygen minima. PLoS ONE, 13: . https://doi.org/10.1371/journal.pone.0207249
Carranza, M.M., Gille, S.T., Franks, P.J.S., Johnson, K.S., Pinkel, R., Girton, J.B., (2018). When mixed layers are not mixed. Storm-driven mixing and bio-optical vertical gradients in mixed layers of the Southern Ocean. Journal of Geophyiscal Research, 123: 7264-7289. https://doi.org/10.1029/2018JC014416
Castro, C.G., Chavez, F.P., Pennington, J.T., Durazo, R., Collins, C.A., (2018). Temporal variability of downward fluxes of organic carbon off Monterey Bay. Deep Sea Research Part II Topical Studies in Oceanography, 151: 89-101. https://doi.org/10.1016/j.dsr2.2018.07.001
Chavez, F.P., Collins, C.A., Coale, K.H., (2018). Studies of the California Current Part 3. Deep Sea Research Part II Topical Studies in Oceanography, 151: 146.
Chavez, F.P., Sevadjian, J., Wahl, C., Friederich, J., Friederich, G.E., (2018). Measurement of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II Topical Studies in Oceanography, 151: 137-146. https://doi.org/10.1016/j.dsr2.2017.01.001
Christiansen, S., Hoving, H.- J., Schütte, F., Hauss, H., Karstensen, J., Körtzinger, A., Schröder, S.M., Stemmann, L., Christiansen, B., Picheral, M., Brandt, P., Robison, B., Koch, R., Kiko, R., (2018). Particulate matter flux interception in oceanic mesoscale eddies by the polychaete Poeobius sp.. Limnology and Oceanography, 63: 2093-2109. https://doi.org/10.1002/lno.10926
Clague, D.A., Caress, D.W., Dreyer, B.M., Lundsten, L., Paduan, J.B., Portner, R.A., Spelz-Madero, R., Bowles, J.A., Castillo, P.R., Guardado-France, R., Le Saout, M., Martin, J.F., Santa Rosa-del Rio, M.A., Zierenber, R.A., (2018). Geology of the Alarcon Rise, Southern Gulf of California. Geochemistry Geophysics Geosystems, 19: 807-837. http://doi.org/10.1002/2017GC007348
Clague, D., Marsaglia, K.M., Cousens, B.L., Paduan, J.B., (2018). Oligocene and Miocene volcanics in the sedimentary forearc of the Outer California Borderland. Society for Sedimentary Geology, 110: .
Clague, D., Paduan, J., Dreyer, B., Chadwick Jr., W.W., Rubin, K., Perfit, M.R., Fundis, A.T., (2018). Chemical variations in the 1998, 2011, and 2015 lava flows from axial seamount, Juan de Fuca Ridge: Cooling during ascent, lateral transport, and flow. Geochemistry Geophysics Geosystems, 19: . https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018GC007708
Coale, K., Prince, M., Muller, R., Lamerdin, S., Chavez, F.P., Collins, C., (2018). Introduction to the California Current Studies, Part 3, including a brief description of R/V Point Sur and her contributions to graduate research and education, 1986-2016. Deep Sea Research Part II Topical Studies in Oceanography, 151: 1-3. https://doi.org/10.1016/j.dsr2.2018.05.002
Cyronak, T., Andersson, A.J., D'Angelo, S., Bresnahan, P.J., Davidson, C., Kindeberg, T., Pennise, J., Takeshita, Y., White, M., (2018). Short-term spatial and temporal carbonate chemistry variability in two contrasting seagrass meadows: Implications for pH buffering capacities. Estuaries and Coasts, 41: 1282-1296. http://dx.doi.org/10.1007/s12237-017-0356-5
Djurhuus, A., Pitz, K., Sawaya, N.A., Rojas Márquez, J., Michaud, B., Montes, E., Muller-Karger, F.E., Breitbart, M., (2018). Evaluation of marine zooplankton community structure through environmental DNA metabarcoding. Limnology and Oceanography Methods, 16: 209-221. https://doi.org/10.1002/lom3.10237
Dornelas, M., Antao, L.H., Moyes, E., Bates, A.E., Magurran, A.E., Adam, D., Akhmetzhanova, A.A., Appeltans, W., Arcos, J.M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A.H., Barbosa, M., Barreto, T.E., Bassler, C., Bellgrove, A., Belmaker, J., Benedetti-Checchi, L., Bett, B.J., Bjorkman, A.D., Blazewicz, M., Blowes, S.A., Bloch, C.P., Bonebrake, T.C., Boyd, S., Brandford, M., Brooks, A.J., Brown, J.H., Bruelheide, H., Budy, P., Carvalho, F., Castaneda-Moya, E., Chen, C.A., Chamblee, J.F., Chase, T.J., Collier, L.S., Collinge, S.K., Condit, R., Cooper, E.J., Cornelissen, J.H.C., Cotano, U., Crow, S.K., Damasceno, G., Davies, C.H., Davis, R.A., Day, F.P., Degraer, S., Doherty, T.S., Dunn, T.E., Durigan, G., Duffy, J.E., Edelist, D., Edgar, G.J., Elahi, R., Elmendorf, S.C., Enemar, A., Ernest, S.K.M., Escribano, R., Estiarte, M., Evans, B.S., Fan, T.Y., Farah, F.T., Fernandes, L.L., Farneda, F.Z., Fidelis, A., Fitt, R., Fozaa, A.M., Franco, G.A.D.C., Frank, G.E., Fraser, W.R., Garcia, H., Gatti, R.C., Givan, O., Gorgone-Barbosa, E., Gould, W.A., Gries, C., Grossman, G.D., Gutierrez, J.R., Hale, S., Harmon, M.E., Harte, J., Haskins, G., Henshaw, D.L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Hoey, G.V., Hofgaard, A., Holeck, K., Hollister, R.D., Holmes, R., Hoogenboom, M., Hsieh, C., Hubbell, S.P., Huettmann, F., Huffard, C.L., Hurlbert, A.H., Ivanauskas, N.M., Janik, D., Jandt, U., Jazdzewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F.A.M., Kang, J., Kartawijaya, T., Keeley, E.C., Kelt, D.A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C.C., Kortz, A.R., Kral, K., Kuhnz, L.A., Kuo, C.Y., Kushner, D.J., Laguionie-Marchias, C., Lancaster, L.T., Lee, C.M., Lefcheck, J.S., Levesque, E., Lightfoot, D., Lloret, F., Lloyd, J.D., Lopez-Baucells, A., Louzano, M., Madin, J.S., Magnusson, B., Malamud, S., Matthews, I., McFarland, K.P., McGill, B., MvKnight, D., McLarney, W.O., Meador, J., Meserve, P.L., Metcalfe, D.J., Meyer, C.F.J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Moreira, C.M., Miller, J., Murphy, G., Myers-Smith, I.H., Myster, R.W., Naumov, A., Neat, F., Nelson, J.A., Nelson, M.P., Newton, S.F., Norden, N., Oliver, J.C., Olsen, E.M., Onipchenko, V.G., Pabis, K., Pabst, R.J., Paquette, A., Pardede, S., Paterson, D.M., Pelissier, R., Penuelas, J., Perez-Matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H.H.T., Priscu, J.C., Provoost, P., Prudic, K.L., Pulliainen, E., Ramesh, B.R., Ramos, O.M., Rassweiler, A., Rebelo, J.E., Reed, D.C., Reich, P.B., Remillard, S.M., Richardson, A.J., van Rijn, I., Rocha, R., Rivera-Monroy, V.H., Rixen, C., Robison, K.P., Rodrigues, R.R., Rossa-Feres, D.C., Rudstam, L., Ruhl, H., Ruz, C.S., Sampaio, E.M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F.A.M., Savassi-Coutinho, A.P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K.T., Shaver, G.R., Sherman, S., Sherry, T.W., Sicinski, J., Sievers, C., da Silva, A.C., da Silva, F.R., Silveira, F.L., Slingsby, J., Smart, T., Snell, S.J., Soudzilovskaia, N.A., Souza, G.B.G., Souza, F.M., Souza, V.C., Stallings, C.D., Stanforth, R., Stanley, E.H., Sterza, J.M., Stevens, M., Stuart-Smith, R., Suarez, J.M., Supp, S., Tamashiro, J.Y., Tarigan, S., Thiede, G.P., Thorn, S., Tolvanen, A., Toniato, M.T.Z., Totland, O., Twilley, R.R., Vaitkus, G., Valdivia, N., Ballejo, M.I., Valone, T.J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H.M., Vianna, M., Vieira, R.P., Vrska, T., Vu, C.Q., Vu, L.V., Waide, R.B., Waldock, C., Watts, D., Webb, S., Wesotowski, T., White, E.P., Widdicombe, C.E., Wilgers, D., Williams, R., Williams, S.B., Williamson, M., Willig, M.R., Willis, T.J., Wipf, S., Woods, K.D., Woehler, E.J., Zawada, K., Zettler, M.L., (2018). BioTIME - A time-series database for the Anthropocene. Global Ecology and Biogeography : 760-786. http://doi.org/10.1111/geb.12729
Dunlop, K.M., Jarvis, T., Benoit-Bird, K.J., Waluk, C.M., Caress, D.W., Thomas, H., Smith Jr., K.L., (2018). Detection and characterization of deep-sea benthopelagic animals from an autonomous underwater vehicle with a multibeam echosounder: a proof of concept and description of data-processing methods. Deep Sea Research 1, 134: 64-69. https://doi.org/10.1016/j.dsr.2018.01.006
Fassbender, A.J., Alin, S.R., Feely, R.A., Sutton, A.J., Newton, J.A., Krembs, C., Bos, J., Keyzers, M., Devol, A., Ruef, W., Pelletier, G., (2018). Seasonal carbonate chemistry variability in marine surface waters of the US Pacific Northwest. Earth System Science Data, 10: 1367-1401. https://doi.org/10.5194/essd-10-1367-2018
Fassbender, A.J., Bourbonnais, A. , Clayton, S., Gaube, P., Omand, M., Franks, P.J., Altabet, M.A. , McGillicuddy Jr., D.J., (2018). Interpreting mosaics of ocean biogeochemistry. EOS, 99: . https://doi.org/10.1029/2018EO109707
Fassbender, A.J., Palter, J.B., Long, M.C., Ito, T., Bishop, S.P., Cronin, M.F., (2018). Ocean carbon hot spots: A joint US CLIVAR and OCB workshop report. Ocean Carbon Hot spots : 34. https://doi.org/10.5065/d6z036zs
Fassbender, A.J., Rodgers, K.B., Palevsky, H.I., Sabine, C.L., (2018). Seasonal asymmetry in the evolution of surface ocean pCO2 and pH thermodynamic drivers and the influence on sea-air CO2 flux. Global Biogeochemical Cycles, 32: 1476-1497. https://doi.org/10.1029/2017GB005855
Fawcett, S. E., Johnson, K.S., Riser, S.C., Van Oostende, N., Sigman, D. M., (2018). Low-nutrient organic matter in the Sargasso Sea thermocline: A hypothesis for its role, identity, and carbon cycle implications. Marine Chemistry, 207: 108-123. https://doi.org/10.1016/j.marchem.2018.10.008
Fritzche, E., Staudinger, C., Fischer, J.P., Thar, R., Jannasch, H., Plant, J., Blum, M., Massion, G., Thomas, H., Hoech, J., Johnson, K.S., Borisov, S.M., Klimant, I., (2018). A validation and comparison study of new, compact, versatile optodes for oxygen, pH and carbon dioxide in marine environments. . Marine Chemistry, 207: 63-76.
Fritzsche, E., Staudinger, C., Fischer, J.P., Thar, R., Jannasch, H., Plant, J.N., Blum, M., Massion, G., Thomas, H., Hoech, J., Johnson, K.S., Borisov, S.M., Klimant, I., (2018). A validation and comparison study of new, compact, versatile optodes for oxygen, pH and carbon dioxide in marine environments. Marine Chemistry, 207: 63-76. https://doi.org/10.1016/j.marchem.2018.10.009
Feely, Richard A., Okazaki, Remy R., Cai, Wei-Jun, Bednaršek, Nina, Alin, Simone R., Byrne, Robert H., Fassbender, Andrea, (2018). The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico. Continental Shelf Research, 152: 50-60. https://doi.org/10.1016/j.csr.2017.11.002
Gallo, N.D., Levin, L.A., Beckwith, M., Barry, J.P., (2018). Home sweet suboxic home: Remarkable hypoxia tolerance in two demersal fish species in the Gulf of California. Ecology, 100: . https://doi.org/10.1002/ecy.2539
Gill, J., Michael, P., Woodcock, J., Dreyer, B., Ramos, F., Clague, D., Kela, J., Scott, S., Konrad, K., Stakes, D., (2018). Corrigendum to: 'Spatial and temporal scale of mantle enrichment at the Endeavour Segment, Juan de Fuca Ridge'. Journal of Petrology, 59: 863-896. https://doi.org/10.1093/petrology/egy076
Grant, N., Matveev, E., Kahn, A.S., Leys, Sally P., (2018). Suspended sediment causes feeding current arrests in situ in the glass sponge Aphrocallistes vastus. Marine Environmental Research, 137: 111-120. https://doi.org/10.1016/j.marenvres.2018.02.020
Gray, A. R., Johnson, K.S., Bushinsky, S.M., Riser, S.C., Russell, J. L., Talley, L. D., Wanninkhof, R., Williams, N.L., Sarmiento, J. L., (2018). Autonomous biogeochemical floats detect a significant carbon dioxide outgassing in the high-latitude Southern Ocean . Geophysical Research Letters, 45: 9049-9057. https://doi.org/10.1029/2018GL078013
Guo, J., Wilken, S., Jimenez, V., Choi, C.J., Ansong, C.K., Dannebaum, R., Sudek, L., Milner, D.S., Bachy, C., Reistetter, E.N., Elrod, V.A., Klimov, D., Purvine, S. O., Wei, C.-L., Kunde-Ramamoorthy, G., Richards, T.A., Goodenough, U.W., Smith, R. D., Callister, S. J., Worden, A. Z., (2018). Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation. Nature Microbiology, 3: 781-790. http://dx.doi.org/10.1038/s41564-018-0178-7
Gwiazda, R., Paull, C, K., Dallimore, S.R., Melling, H., Jin, Y.K., Hong, J.K., Riedel, M., Lundsten, E.M., Anderson, K., Conway, K., (2018). Freshwater seepage into sediments of the shelf, shelf edge, and continental slope of the Canadian Beaufort Sea. Geochemistry, Geophysics, Geosystems, 19: 3039-3055. https://doi.org/10.1029/2018GC007623
Hobson, B., Kieft, B., Raanan, B.Y., Zhang, Y., Birch, J., Ryan, J.P., Chavez, F.P., (2018). An autonomous vehicle-based open ocean Lagrangian observatory. IEEE OES Autonomous Underwater Vehicle Symposium : .
Hoving, H. J. T., Neitzel, P., Robison, B.H., (2018). In situ observations lead to the discovery of the large ctenophore Kiyohimea usagi (Lobata: Eurhamphaeidae) in the eastern tropical Atlantic. Zootaxa, 4526: 232-238. http://dx.doi.org/10.11646/zootaxa.4526.2.8
Huber, J.A., Preston, C., (2018). Take to the high seas: Microbiology labs below the ocean surface. Environmental Microbiology Reports, 11: 23-25. https://doi.org/10.1111/1758-2229.12714
Jin, Y.K., Côté, M.M., Paull, C. K., King, E.L., (2018). 2017 Korea-Canada-U.S.A. Beaufort Sea (offshore Yukon and Northwest Territories) research program: 2017 Araon expedition (ARA08C) cruise report. Geological Survey of Canada, 8406: . https://doi.org/10.4095/308396
Johnson, K., Plant, J.N., Maurer, T.L., (2018). Processing BGC-Argo pH data at the DAC level. Argo Data Management : . https://doi.org/10.13155/57195
Jones, B., Chavez, F.P., Kieft, B., O'Reilly, T., Wahl, C., (2018). Field results from point to point real-time underwater acoustic tracking using a simple mathematical filter. 2018 IEEE OES Autonomous Underwater Vehicle Symposium : .
Jones, M.R., Soule, S.A., Gonnermann, H.M., Le Roux, V., Clague, D.A., (2018). Magma ascent and lava flow emplacement rates during the 2011 Axial Seamount eruption based on CO2 degassing. Earth and Planetary Science Letters, 494: 32-41. https://doi.org/10.1016/j.epsl.2018.04.044
Joo, S., Wang, M.H., Lui, G., Lee, J., Barnas, A., Kim, E., Sudek, S., Worden, A. Z., Lee, J.H., (2018). Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archeplastida. BMC Biology, 16: . https://doi.org/10.1186/s12915-018-0605-5
Kahn, A. S., Chu, Jackson W. F., Leys, Sally P., (2018). Trophic ecology of glass sponge reefs in the Strait of Georgia, British Columbia. Scientific Reports, 8: . https://doi.org/10.1038/s41598-017-19107-x
Kahn, A.S., Geller, J.B., (2018). Partial mitochondrial genome sequences of two abyssal sponges (Porifera, Hexactinellida): Bathydorus laniger and Docosaccus maculatus. Genome Announcements, 6: . https://doi.org/10.1128/genomeA.00234-18
Katija, K., Sherman, A.D., Sherlock, R. E., Robison, B., (2018). DeepPIV reveals how mucus houses of deep-sea, giant Larvaceans are built. Integrative and Comparative Biology, 58: .
Kemp, M., Martin, E.J., (2018). Fault isolation of an electro-mechanical linear actuator. Annual Conference of the Prognostics and Health Management Society : .
Koweek, D.A., Zimmerman, R.C., Hewett, K.M., Gaylord, B., Giddings, S. N. , Nickols, K.J. , Ruesink, J.L. , Stachowicz, J.J., Takeshita, Y., Caldeira, K., (2018). Expected limits on the ocean acidification buffering potential of a temperature seagrass meadow. Ecological Applications, 28: 1964-1714. https://doi.org/10.1002/eap.1771
Leys, S. P., Kahn, A.S., (2018). Oxygen and the energetic requirements of the first multicellular animals. Integrative and Comparative Biology, 58: 666-676. https://doi.org/10.1093/icb/icy051
Litvin, S.Y., Weinstein, M.P., Sheaves, M., Nagelkerken, I., (2018). What makes nearshore habitats nurseries for nekton? An emerging view of the nursery role hypothesis. Estuaries and Coasts, 41: 1539-1550. https://doi.org/10.1007/s12237-018-0383-x
Lodes, K., Matsumoto, G.I., Magnusson, J., (2018). Education And Research: Testing Hypotheses (EARTH). Marine Technology Society Journal, 52: .
Mayot, N., Matrai, P.A., Ellingsen, I.H., Steele, M., Johnson, K., Riser, S.C., Swift, D.D., (2018). Assessing phytoplankton activities in the seasonal ice zone of the Greenland Sea over an annual cycle. Journal of Geophyiscal Research: Oceans, 123: 8004-8025. https://doi.org/10.1029/2018JC014271
McClain, C. R., Nunnally, C., Chapman, A.S.A., Barry, J.P., (2018). Energetic increases lead to niche packing in deep-sea wood falls. Biology Letters, 14: 5. https://doi.org/10.1098/rsbl.2018.0294
McEwen, R., Rock, S.M., Hobson, B., (2018). Iceberg wall following and obstacle avoidance by an AUV. IEEE OES Autonomous Underwater Vehicle Symposium : .
Muller-Karger, F.E., Miloslavich, P., Bax, N.J., Simmons, S., Costello, M.J., Pinto, I.S., Canonico, G., Turner, W., Gill, M., Montes, E., Best, B.D., Pearlman, J., Halpin, P., Dunn, D., Benson, A., Martin, C.S., Weatherdon, L.V., Appeltans, W., Provoost, P., Klein, E., Kelble, C.R., Miller, R.J., Chavez, F.P., Iken, K., Chiba, S., Obura, D., Navarro, L.M., Pereira, H.M., Allain, V., Batten, S., Benedetti-Checchi, L., Duffy, J.E., Kudela, R.M., Rebelo, L., Shin, Y., Geller, G., (2018). Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks. Frontiers in Marine Science, 5: . https://doi.org/10.3389/fmars.2018.00211
Munro, C., Siebert, S., Zapata, F., Howison, M., Damian-Serrano, A., Church, S. H., Goetz, F.E., Pugh, P. R., Haddock, S.H.D., Dunn, C. W., (2018). Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution. Molecular Phylogenetics and Evolution, 127: 823-833. https://doi.org/10.1016/j.ympev.2018.06.030
Nielsen, K., Stachowicz, J., Carter, H., Boyer, K., Bracken, M., Chan, F., Chavez, F., Hovel, K., Kent, M., Nickols, K., Ruesink, J., Tyburczy, J., Wheeler, S., (2018). Emerging understanding of the potential role of seagrass and kelp as an ocean acidification management tool in California. : .
Okamoto, N., Gawryluk, R.M.R., del Campo, J., Strassert, J.F.H., Lukeš, J., Richards, T.A., Worden, A. Z., Santoro, A.E., Keeling, P. J., (2018). A revised taxonomy of Diplonemids including the Eupelagonemidae n. fam. and a type species, Eupelagonema oceanica n. gen. & sp.. The Journal of Eukaryotic Microbiology : . https://doi.org/10.1111/jeu.12679
Orsi, W.D., Wilken, S., del Campo, J., Heger, T., James, E., Richards, T.A., Keeling, P. J., Worden, A. Z., Santoro, A.E., (2018). Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing. Environmental Microbiology, 20: 815-827. https://doi.org/10.1111/1462-2920.14018
Paduan, J.B., Zierenberg, R.A., Clague, D.A., Spelz, R.M., Caress, D.W., Troni, G., Thomas, H., Glessner, J., Lilley, M.D., Lorenson, T., Lupton, J., Neumann, F., Santa Rosa del-Rio, M.A., Wheat., C.G. , (2018). Discovery of hydrothermal vent fields on Alarcón Rise and in Southern Pescadero Basin, Gulf of California. Geochemistry, Geophysics, Geosystems, 19: 4788-4819. https://doi.org/10.1029/2018GC007771
Paull, C, K., Talling, P.J., Maier, K.L., Parsons, D. , Xu, J., Caress, D.W., Gwiazda, R., Lundsten, E.M., Anderson, K., Barry, J.P., Chaffey, M., O'Reilly, T., Rosenberger, K.J., Gales, J.A., Kieft, B., McGann, M., Simmons, S.M., McCann, M., Sumner, E.J., Clare, M.A. , Cartigny, J., (2018). Powerful turbidity currents driven by dense basal layers. Nature Communications, 9: 1-9. https://doi.org/10.1038/s41467-018-06254-6
Pennington, J.T., Chavez, F.P., (2018). Decade-scale oceanographic fluctuation in Monterey Bay, California, 1989-2011. Deep Sea Research Part II Topical Studies in Oceanography, 151: 4-15. https://doi.org/10.1016/j.dsr2.2017.07.005
Pitz, K., Closek, J., Djurhuus, A., Michisaki, R.P., Walz, K. R., Starks, H., Boehm, A.B., Breitbart, M., Kelly, R.P., Chavez, F.P., (2018). Tracking biological communities using 'omics: Examples from Monterey Bay combining different sequencing-based approaches. Workshop on enhancing interoperability & coordination of long-term omics observations : .
Pugh, P. R., Dunn, C. W., Haddock, S.H.D., (2018). A description of Tottonophyes enigmatica gen. nov., sp. nov. in a new family of calycophoran siphonophores (Hydrozoa), with notes on calycophoran canals. Zootaxa, 4415: 452-472. http://dx.doi.org/10.11646/zootaxa.4415.3.3
Ren, A.S., Chai, F., Xue, H., Anderson, D.M., Chavez, F.P., (2018). A sixteen-year decline in dissolved oxygen in the central California Current. Scientific Reports, 8: . https://doi.org/10.1038/s41598-018-25341-8
Rouse, Greg W., Goffredi, Shana K., Johnson, Shannon B., Vrijenhoek, Robert C., (2018). An inordinate fondness for Osedax (Siboglinidae: Annelida): Fourteen new species of bone worms from California. Zootaxa, 4377: 451. http://doi.org/10.11646/zootaxa.4377.4.1
Russell, J. L., Kamenkovich, I., Bitz, C., Ferrari, R., Gille, S.T., Goodman, P.J., Hallberg, R., Johnson, K.S., Khazmutdinova, K., Marinov, I., Mazloff, M.R., Riser, S.C., Sarmiento, J. L., Speer, K.G., Talley, L. D., Wanninkhof, R., (2018). Metrics for the evaluation of the Southern Ocean in coupled climate models and Earth system models. Journal of Geophysical Research: Oceans, 123: 3120-3143. https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2017JC013461
Sanamyan, K.E., Sanamyan, N.P., Kuhnz, L., (2018). A new Culeolus species (Ascidiacea) from the NE Pacific, California. Zootaxa, 4420: 270-278. https://doi.org/10.11646/zootaxa.4420.2.8
Sato, M., Barth, J.A., Benoit-Bird, K.J., Pierce, S.D., Cowles, T.J., Brodeur, R.D., Peterson, W.T., (2018). Coastal upwelling fronts as a boundary for planktivorous fish distributions. Marine Ecology Progress Series, 595: 171-186. http://dx.doi.org/10.3354/meps12553
Schultz, D.T., Kotlobay, A.A., Ziganshin, R., Bannikov, A., Markina, N.M., Chepurnyh, T.V., Shakhova, E.S., Palkina, K., Haddock, S.H.D., Yampolsky, I.V., Oba, Y., (2018). Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta. Biochemical and Biophysical Research Communications, 502: 318-323. https://doi.org/10.1016/j.bbrc.2018.05.135
Smith Jr., K.L., Ruhl, H.A., Huffard, C.L., Messié, M., Kahru, M., (2018). Episodic organic carbon fluxes from surface ocean to abyssal depths during long-term monitoring in NE Pacific. Proceedings of the National Academy of Sciences, 115: 12235-12240. https://doi.org/10.1073/pnas.1814559115
Stanev, E.V., Poulain, P.M., Grayek, S., Johnson, K.S., Claustre, H., Murray, J.W., (2018). Understanding the dynamics of the oxic-anoxic interface in the Black Sea. Geophysical Research Letters, 45: 864-871. https://doi.org/10.1002/2017GL076206
Stark, J. S., Roden, N. P., Johnstone, G. J., Milnes, M., Black, J. G., Whiteside, S., Kirkwood, W., Newbery, K., Stark, S., van Ooijen, E., Tilbrook, B., Peltzer, E. T., Berry, K., Roberts, D., (2018). Carbonate chemistry of an in-situ free-ocean CO2 enrichment experiment (antFOCE) in comparison to short term variation in Antarctic coastal waters. Scientific Reports, 8: 1-16. https://doi.org/10.1038/s41598-018-21029-1
Strassert, J.F.H., Karnkowska, A., Hehenberger, E., Del Campo, J., Kolisko, M., Okamoto, N., Burki, F., Janouškovec, J., Poirier, C.L., Leonard, G.H., Hallam, S., Richards, T.A., Worden, A. Z., Santoro, A.E., Keeling, P. J., (2018). Single cell genomics of uncultured Marine Alveolates (MALVS) shows paraphyly of basal dinoflagellates. The ISME Journal, 12: 304-308. https://doi.org/10.1038/ismej.2017.167
Swart, S., Johnson, K.S., Mazloff, M.R., Meijers, A., Meredith, M.P., Newman, L., Sallée, J.-B., (2018). The Southern Ocean. State of the Climate in 2017, 99: S185-S190. http://doi.org/10.1175/2018BAMSStateoftheClimate.1
Takeshita, Y., Cyronak, T., Martz, T.R., Kindeberg, T., Andersson, A., (2018). Coral reef carbonate chemistry variability at different functional scales. Frontiers in Marine Science, 5: . https://doi.org/10.3389/fmars.2018.00175
Takeshita, Y., Johnson, K.S., Martz, T.R., Plant, J.N., Sarmiento, J. L., (2018). Assessment of autonomous pH measurements for determining surface seawater partial pressure of CO2. Journal of Geophyiscal Research, 123: 4003-4013. https://doi.org/10.1029/2017JC013387
Talley, L. D., Rosso, I., Kamenkovich, I., Mazloff, M.R., Wang, J., Boss, E.S., Gray, A. R., Johnson, K.S., Key, R. , Riser, S.C., Williams, N.L., Sarmiento, J. L., (2018). Southern Ocean biogeochemical float deployment strategy, with example from the Greenwich Meridian line (GO-SHIP A12). Journal of Geophyiscal Research : 403-431. https://doi.org/10.1029/2018JC014059
Valdés, Á., Lundsten, L., Wilson, N.G., (2018). Five new deep-sea species of nudibranchs (Gastropoda: Heterobranchia: Cladobranchia) from the Northeast Pacific. Zootaxa, 4526: 401-433. https://dx.doi.org/10.11646/zootaxa.4526.4.1
Weinstein, M.P., Hazen, R., Litvin, S.Y., (2018). Response of nekton to tidal salt marsh restoration, a meta-analysis of restoration trajectories. . Wetlands : 1-11. https://doi.org/10.1007/s13157-018-1106-6
Williams, N.L., Juranek, L. W., Feely, R.A., Russell, J. L., Johnson, K.S., Hales, B., (2018). Assessment of the carbonate chemistry seasonal cycles in the Southern Ocean from persistent observational platforms. Journal of Geophysical Research: Oceans, 123: 4833-4852. https://doi.org/10.1029/2017JC012917
Wilson, J.M., Litvin, S.Y., Beman, J.M., (2018). Microbial community networks associated with variations in community respiration rates during upwelling in nearshore Monterey Bay, California.. Environmental Microbiology Reports, 10: 272-282. https://doi.org/10.1111/1758-2229.12635
Woodson, C.B., Micheli, F., Boch, C.A., Al-Najjar, M., Espinoza, A., Hernandez, A., Vazquez-Vera, L., Saenz-Arroyo, A., Monismith, S.G., Torre, J., (2018). Harnessing marine microclimates for climate change adaptation and marine conservation. Conservation Letters, e12609: . https://doi.org/10.1111/conl.12609
Zurowietz, M., Langenkämper, D., Hosking, B., Ruhl, H.A., Nattkemper, T.W., (2018). MAIA—a machine learning assisted image annotation method for environmental monitoring and exploration. PLoS ONE, 13: e0207498. https://doi.org/10.1371/journal.pone.0207498

2017

Andruszkiewicz, E. A., Starks, H. A., Chavez, F. P., Sassoubre, L. M., Block, B. A., Boehm, A. B., (2017). Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding. PLoS One, 12: e0176343. http://dx.doi.org/10.1371/journal.pone.0176343
Barry, J.P., Graves, D., Kecy, C., Lovera, C., Okuda, C., Boch, C.A., Lord, J.P., (2017). Chasing the future: How will ocean change affect marine life?. Oceanography, 30: 60-71. https://doi.org/10.5670/oceanog.2017.424
Benoit-Bird, K.J., Moline, M.A., Southall, B., (2017). Prey in oceanic sound scattering layers organize to get a little help from their friends. Limnology and Oceanography, 62: 2788-2798. http://doi.org/10.1002/lno.10606
Breusing, C., Vrijenhoek, R. C., Reusch, T. B., (2017). Widespread introgression in deep-sea hydrothermal vent mussels. BMC Evolutionary Biology, 17: 10. http://dx.doi.org/10.1186/s12862-016-0862-2
Brewer, Peter G., Peltzer, Edward T., (2017). Depth perception: the need to report ocean biogeochemical rates as functions of temperature, not depth. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 375: .
Brewer, P.G., Peltzer, E.T., Walz, P.M., Kirkwood, W.J., (2017). Creating the art of deep-sea experimental chemistry with MBARI ROVs. Oceanography, 30: 48-59. https://doi.org/10.5670/oceanog.2017.423
Brewer, Peter G., Peltzer, Edward T., Walz, Peter M., Wojciechowicz, Matthew, (2017). The speciation of water in sea water and in gelatinous marine animals. Marine Chemistry, 195: 94-104. https://doi.org/10.1016/j.marchem.2017.05.002
Briggs, E.M., Sandoval, E., Erten, S., Takeshita, Y., Kummel, A.C., Martz, T.R., (2017). Solid State Sensor for Simultaneous Measurement of Total Alkalinity and pH of Seawater. ACS Sensors, 2: 1302-1309. http://doi.org/10.1021/acssensors.7b00305
Burridge, A. K., Hornlein, C., Janssen, A. W., Hughes, M., Bush, S. L., Marletaz, F., Gasca, R., Pierrot-Bults, A. C., Michel, E., Todd, J. A., Young, J. R., Osborn, K. J., Menken, S. B. J., Peijnenburg, Ktca, (2017). Time-calibrated molecular phylogeny of pteropods. PLoS One, 12: e0177325. http://dx.doi.org/10.1371/journal.pone.0177325
Burton, E.J., Kuhnz, L.A., DeVogelaere, A.P., Barry, J.P., (2017). Sur Ridge Field Guide: Monterey Bay National Marine Sanctuary. Marine Sanctuaries Conservation Series : 122.
Caron, David A., Gellene, Alyssa G., Smith, Jayme, Seubert, Erica L., Campbell, Victoria, Sukhatme, Gaurav S., Seegers, Bridget, Jones, Burton H., Lie, Alle A. Y., Terrado, Ramon, Howard, Meredith D. A., Kudela, Raphael M., Hayashi, Kendra, Ryan, John, Birch, James, Demir-Hilton, Elif, Yamahara, Kevan, Scholin, Chris, Mengel, Michael, Robertson, George, (2017). Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science, 186: 223-236. http://dx.doi.org/10.1016/j.ecss.2015.09.013
Carter, B.R., Feely, R.A., Williams, N.L., Dickson, A.G., Fong, M.B., Takeshita, Y., (2017). Updated Methods for Global Locally Interpolated Estimation of Alkalinity, pH, and Nitrate. Limnology and Oceanography: Methods, 16: 119-131. https://doi.org/10.1002/lom3.10232
Chavez, F.P., Brewer, P.G., Scholin, C.A., (2017). Special issue on celebrating 30 years of ocean science and technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30: 145.
Chavez, F.P., Brewer, P.G., Scholin, C.A., (2017). Celebrating 30 years of ocean science technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30: 18-25. https://doi.org/10.5670/oceanog.2017.420
Chavez, F.P., Pennington, J.T., Michisaki, R.P., Blum, M., Chavez, G.M., Friederich, J., Jones, B., Herlien, B., Kieft, B., Hobson, B., Ren, A.S., Ryan, J., Sevadjian, J.C., Wahl, C., Walz, K. R., Yamahara, K., Friederich, G.E., Messié, M., (2017). Climate variability and change: Response of a coastal ocean ecosystem. Oceanography, 30: 128-145. https://doi.org/10.5670/oceanog.2017.429
Chavez, Francisco P., Sevadjian, Jeff, Wahl, Chris, Friederich, Jules, Friederich, Gernot E., (2017). Measurements of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II: Topical Studies in Oceanography : . http://dx.doi.org/10.1016/j.dsr2.2017.01.001
Choi, C. J., Bachy, C., Jaeger, G. S., Poirier, C., Sudek, L., Sarma, V.V.S.S., Mahadevan, A., Giovannoni, S. J., Worden, A. Z., (2017). Newly discovered deep-branching marine plastid lineages are numerically rare but globally distributed. Current Biology, 27: R15-R16. http://dx.doi.org/10.1016/j.cub.2016.11.032
Choy, C. A., Haddock, S. H. D., Robison, B. H., (2017). Deep pelagic food web structure as revealed by in situ feeding observations. Proc Biol Sci, 284: . http://doi.org/10.1098/rspb.2017.2116
Clague, D.A., Paduan, J.B., Caress, D.W., Chadwick Jr., W.W., Le Saout, M., Dreyer, B., Portner, R.A., (2017). High-resolution AUV mapping and targeted ROV observations of three historical lava flows at Axial Seamount. Oceanography, 30: 82-99. http://doi.org/10.5670/oceanog.2017.426
Clayton, Sophie, Lin, Yun-Chi, Follows, Michael J., Worden, Alexandra Z., (2017). Co-existence of distinct Ostreococcus ecotypes at an oceanic front. Limnology and Oceanography, 62: 75-88. http://dx.doi.org/10.1002/lno.10373
Conrad, Tracey, Hein, James R., Paytan, Adina, Clague, David A., (2017). Formation of Fe-Mn crusts within a continental margin environment. Ore Geology Reviews, 87: 25-40. http://dx.doi.org/10.1016/j.oregeorev.2016.09.010
Covault, Jacob A., Kostic, Svetlana, Paull, Charles K., Sylvester, Zoltán, Fildani, Andrea, (2017). Cyclic steps and related supercritical bedforms: Building blocks of submarine fans and canyon-channel systems, Western North America. Marine Geology : . http://dx.doi.org/10.1016/j.margeo.2016.12.009
Cuvelier, M. L., Guo, J., Ortiz, A. C., van Baren, M. J., Tariq, M. A., Partensky, F., Worden, A. Z., (2017). Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress. PLoS One, 12: e0172135. http://dx.doi.org/10.1371/journal.pone.0172135
Duffy, Leanne M., Kuhnert, Petra, Pethybridge, Heidi R., Young, Jock W., Olson, Robert J., Logan, John M., Goñi, Nicolas, Romanov, Evgeny, Allain, Valerie, Staudinger, Michelle, Abecassis, Melanie, Choy, C. Anela, Hobday, Alistair J., Simier, Monique, Galván-Magaña, Felipe, Potier, Michel, Ménard, Frederic, (2017). Global trophic ecology of yellowfin, bigeye, and albacore tunas: understanding predation on micronekton communities at ocean-basin scales. Deep Sea Research Part II Topical Studies in Oceanography : . http://dx.doi.org/10.1016/j.dsr2.2017.03.003
Fassbender, A.J., Alin, S.R., Feely, R.A., Sutton, A.J., Newton, J.A., Byrne, R.H., (2017). Estimating Total Alkalinity in the Washington State Coastal Zone: Complexities and Surprising Utility for Ocean Acidification Research. Estuaries and Coasts, 40: 404-418. http://doi.org/10.1007/s12237-016-0168-z
Fassbender, Andrea J., Palevsky, Hilary I., Martz, Todd R., Ingalls, Anitra E., Gledhill, Martha, Fawcett, Sarah E., Brandes, Jay A., Aluwihare, Lihini I., (2017). Perspectives on Chemical Oceanography in the 21st century: Participants of the COME ABOARD Meeting examine aspects of the field in the context of 40years of DISCO. Marine Chemistry : . https://doi.org/10.1016/j.marchem.2017.09.002
Fassbender, A.J., Sabine, C.L., Cronin, M.F., Sutton, A.J., (2017). Mixed layer carbon cycling at the Kuroshio Extension Observatory. Global Biogeochemical Cycles, 31: 272-288. http://doi.org/10.1002/2016GB005547
Fassbender, Andrea J., Sabine, Christopher L., Palevsky, Hilary I., (2017). Nonuniform ocean acidification and attenuation of the ocean carbon sink. Geophysical Research Letters, 44: 8404-8413. http://dx.doi.org/10.1002/2017GL074389
Fischer, Andrew M., Ryan, John P., Rienecker, Erich V., (2017). Fine scale mapping of the structure and composition of the Elkhorn Slough (California, USA) tidal plume. Estuarine, Coastal and Shelf Science, 184: 10-20. http://dx.doi.org/10.1016/j.ecss.2016.10.035
Francis, W. R., Christianson, L. M., Haddock, S. H. D., (2017). Symplectin evolved from multiple duplications in bioluminescent squid. PeerJ, 5: e3633. http://dx.doi.org/10.7717/peerj.3633
Goffredi, S. K., Johnson, S. B., Tunnicliffe, V., Caress, D., Clague, D., Escobar, E., Lundsten, L., Paduan, J. B., Rouse, G., Salcedo, D. L., Soto, L. A., Spelz-Madero, R., Zierenberg, R., Vrijenhoek, R., (2017). Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity. Proceedings of the Royal Society B, 284: . http://dx.doi.org/10.1098/rspb.2017.0817
Haddock, S.H.D., Christianson, L. M., Francis, W. R., Martini, S, Dunn, C. W., Pugh, P. R., Mills, C.E., Osborn, K. J., Seibel, B.A., Choy, C. A., Schnitzler, C.E., Matsumoto, G.I., Messié, M., Schultz, D.T., Winnikoff, J.R., Powers, M. L., Gasca, R., Browne, W. E., Johnsen, S., Schlining, K.L., von Thun, S., Erwin, B.E., Ryan, J.F., Thuesen, E.V., (2017). Insights into the biodiversity, behavior, and bioluminescence of deep-sea organisms using molecular and maritime technology. Oceanography, 30: 38-47. https://doi.org/10.5670/oceanog.2017.422
Hamilton, S. L., Logan, C. A., Fennie, H. W., Sogard, S. M., Barry, J. P., Makukhov, A. D., Tobosa, L. R., Boyer, K., Lovera, C. F., Bernardi, G., (2017). Species-specific responses of juvenile rockfish to elevated pCO2: From behavior to genomics. PLoS One, 12: e0169670. http://dx.doi.org/10.1371/journal.pone.0169670
Harvey, Julio B. J., Johnson, Shannon B., Fisher, Jennifer L., Peterson, William T., Vrijenhoek, Robert C., (2017). Comparison of morphological and next generation DNA sequencing methods for assessing zooplankton assemblages. Journal of Experimental Marine Biology and Ecology, 487: 113-126. http://dx.doi.org/10.1016/j.jembe.2016.12.002
Hoving, H. J., Haddock, S. H., (2017). The giant deep-sea octopus Haliphron atlanticus forages on gelatinous fauna. Scientific Reports, 7: . http://dx.doi.org/10.1038/srep44952
Hoving, H. J. T., Bush, S. L., Haddock, S.H.D., Robison, B.H., (2017). Bathyal feasting: post-spawning squid as a source of carbon for deep-sea benthic communities. Proceedings of the Royal Society B, 284: . http://doi.org/10.1098/rspb.2017.2096
Hoving, H. J. T., Robison, B. H., (2017). The pace of life in deep-dwelling squids. Deep Sea Research Part I: Oceanographic Research Papers : . http://dx.doi.org/10.1016/j.dsr.2017.05.005
Hughes, Brent B., Beas-Luna, Rodrigo, Barner, Allison K., Brewitt, Kimberly, Brumbaugh, Daniel R., Cerny-Chipman, Elizabeth B., Close, Sarah L., Coblentz, Kyle E., de Nesnera, Kristin L., Drobnitch, Sarah T., Figurski, Jared D., Focht, Becky, Friedman, Maya, Freiwald, Jan, Heady, Kristen K., Heady, Walter N., Hettinger, Annaliese, Johnson, Angela, Karr, Kendra A., Mahoney, Brenna, Moritsch, Monica M., Osterback, Ann-Marie K., Reimer, Jessica, Robinson, Jonathan, Rohrer, Tully, Rose, Jeremy M., Sabal, Megan, Segui, Leah M., Shen, Chenchen, Sullivan, Jenna, Zuercher, Rachel, Raimondi, Peter T., Menge, Bruce A., Grorud-Colvert, Kirsten, Novak, Mark, Carr, Mark H., (2017). Long-term studies contribute disproportionately to ecology and policy. BioScience, 67: 271-281. http://dx.doi.org/10.1093/biosci/biw185
Jayne, Steven, Roemmich, Dean, Zilberman, Nathalie, Riser, Stephen, Johnson, Kenneth, Johnson, Gregory, Piotrowicz, Stephen, (2017). The Argo Program: Present and Future. Oceanography, 30: 18-28. http://dx.doi.org/10.5670/oceanog.2017.213
Johnson, Kenneth S., Plant, Joshua N., Coletti, Luke J., Jannasch, Hans W., Sakamoto, Carole M., Riser, Stephen C., Swift, Dana D., Williams, Nancy L., Boss, Emmanuel, Haëntjens, Nils, Talley, Lynne D., Sarmiento, Jorge L., (2017). Biogeochemical sensor performance in the SOCCOM profiling float array. Journal of Geophysical Research: Oceans, 122: 6416-6436. http://dx.doi.org/10.1002/2017JC012838
Johnson, Kenneth S., Plant, Joshua N., Dunne, John P., Talley, Lynne D., Sarmiento, Jorge L., (2017). Annual nitrate drawdown observed by SOCCOM profiling floats and the relationship to annual net community production. Journal of Geophysical Research: Oceans, 122: 6668-6683. http://dx.doi.org/10.1002/2017JC012839
Katija, Kakani, Choy, C. Anela, Sherlock, Rob E., Sherman, Alana D., Robison, Bruce H., (2017). From the surface to the seafloor: How giant larvaceans transport microplastics into the deep sea. Science Advances, 3: . http://dx.doi.org/10.1126/sciadv.1700715
Katija, Kakani, Sherlock, R. E., Sherman, A.D., Robison, B., (2017). New technology reveals the role of giant larvaceans in oceanic carbon cycling. Science Advances, 3: e1602374. http://dx.doi.org/10.1126/sciadv.1602374
Kemp, M., Raanan, B.Y., (2017). Actuator Fault Detection for Autonomous Underwater Vehicles. PHM Society Conference : .
Lewis, A., Matsumoto, G.I., (2017). Science Educator Professional Development: Big Data and Inquiry Learning in Optimizing STEM Education with Advanced ICTs and Simulations: Tools and Solutions for Inquiry-Based STEM Learning. Optimizing STEM education with advanced ICTs and Simulations : 219-244. http://doi.org/10.4018/978-1-5225-2528-8
Lord, Joshua P., Barry, J.P., (2017). Juvenile mussel and abalone predation by the lined shore crab Pachygrapsus crassipes. Journal of Shellfish Research, 36: 209-213. http://dx.doi.org/10.2983/035.036.0122
Lord, J. P., Barry, J. P., Graves, D., (2017). Impact of climate change on direct and indirect species interactions. Marine Ecology Progress Series, 571: 1-11. http://dx.doi.org/10.3354/meps12148
Lundsten, Lonny, Reiswig, Henry M., Austin, William C., (2017). Three new species of Cladorhiza (Demospongiae, Poecilosclerida, Cladorhizidae) from the Northeast Pacific Ocean. Zootaxa, 4317: 247. http://dx.doi.org/10.11646/zootaxa.4317.2.3
Maier, K. L., Paull, C, K., Brothers, D. S., Caress, D.W., McGann, M., Lundsten, E.M., Anderson, A., Gwiazda, R., (2017). Investigation of late Pleistocene and Holocene activity in the San Gregorio Fault Zone on the continental slope north of Monterey Canyon, offshore Central California . Bulletin of the Seismological Society of America : . http://dx.doi.org/10.1785/0120160261
Manning, C. C., Stanley, R. H. R., Nicholson, D. P., Smith, J. M., Pennington, J. T., Fewings, M. R., Squibb, M. E., Chavez, F. P., (2017). Impact of recently upwelled water on productivity investigated using in situ and incubation-based methods in Monterey Bay. Journal of Geophysical Research-Oceans, 122: 1901-1926. http://dx.doi.org/10.1002/2016JC012306
Martini, S, Haddock, S.H.D., (2017). Quantification of bioluminescence from the surface to the deep sea demonstrates its predominance as an ecological trait. Scientific Reports, 7: 1-11. http://dx.doi.org/10.1038/srep45750
McClain, C. R., Barry, J. P., Webb, T. J., (2017). Increased Energy Differentially Increases Richness and Abundance of Optimal Body Sizes in Deep-Sea Wood-Falls. Ecology : .
McLaughlin, Karen, Dickson, Andrew, Weisberg, Stephen B., Coale, Kenneth, Elrod, Virginia, Hunter, Craig, Johnson, Kenneth S., Kram, Susan, Kudela, Raphael, Martz, Todd, Negrey, Kendra, Passow, Uta, Shaughnessy, Frank, Smith, Jennifer E., Tadesse, Dawit, Washburn, Libe, Weis, Kyle R., (2017). An evaluation of ISFET sensors for coastal pH monitoring applications. Regional Studies in Marine Science, 12: 11-18. http://dx.doi.org/10.1016/j.rsma.2017.02.008
Messié, Monique, Chavez, Francisco P., (2017). Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems. Geophysical Research Letters, 44: 8979-8986. http://dx.doi.org/10.1002/2017GL074322
Netburn, Amanda N., Kinsey, Joanna D., Bush, Stephanie L., Djurhuus, Anni, Fernandez, Julianne, Hoffman, Colleen L., McVeigh, Doreen, Twing, Katrina I., Bagge, Laura, (2017). First HOV Alvin study of the pelagic environment at Hydrographer Canyon (NW Atlantic). Deep Sea Research Part II: Topical Studies in Oceanography : . https://doi.org/10.1016/j.dsr2.2017.10.001
Oju, B., Oka, E., Bishop, S.P., Chen, S., Fassbender, A.J., (2017). Decadal variability of the Kuroshio Extension system and its impact on subtropical mode water formation. US CLIVAR Variations: Frontiers in western boundary current research, 15: 11-16. http://doi.org/10.5065/D6SJ1JB2
Olins, H.C., Rogers, D.R., Preston, C., Ussler III, W., Pargett, D., Jensen, S., Roman, B., Birch, J.M., Scholin, C.A., Haroon, M.F., Girguis, P. R., (2017). Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field. Frontiers in Microbiology, 8: . https://doi.org/10.3389/fmicb.2017.01042
Raanan, B.Y., Bellingham, J., Zhang, Y., Kemp, M., Kieft, B., Singh, H., Girdhar, Y., (2017). Detection of Unanticipated Faults for Autonomous Underwater Vehicles using Online Topic Models. Journal of Field Robotics, 00: 1-13. https://doi.org/10.1002/rob.21771
Robison, B.H., Reisenbichler, K.R., Sherlock, R. E., (2017). The coevolution of midwater research and ROV technology at MBARI. Oceanography, 30: 26-37. https://doi.org/10.5670/oceanog.2017.421
Rodgers, K.B., Zhai, P., Iudicone, D., Aumont, O., Carter, B., Fassbender, A.J., Griffies, S.M., Plancherel, Y., Resplandy, L., Slater, R.D., Toyama, K., (2017). Western boundary currents as conduits for the ejection of anthropogenic carbon from the thermocline. US CLIVAR Variations: Frontiers in western boundary current research, 15: 6-10. http://doi.org/10.5065/D6SJ1JB2
Sakamoto, Carole M., Johnson, Kenneth S., Coletti, Luke J., Jannasch, Hans W., (2017). Pressure correction for the computation of nitrate concentrations in seawater using an in situ ultraviolet spectrophotometer. Limnology and Oceanography: Methods : . http://dx.doi.org/10.1002/lom3.10209
Sakamoto, C.M., Johnson, K.S., Coletti, L.J., Maurer, T.L., Massion, G., Pennington, J.T., Plant, J.N., Jannasch, H.W., Chavez, F.P., (2017). Hourly in situ nitrate on a coastal mooring: A 15-year record and insights into new production. Oceanography, 30: 114-127. https://doi.org/10.5670/oceanog.2017.428
Sanborn, Kelsey L., Webster, Jody M., Yokoyama, Yusuke, Dutton, Andrea, Braga, Juan C., Clague, David A., Paduan, Jennifer B., Wagner, Daniel, Rooney, John J., Hansen, John R., (2017). New evidence of Hawaiian coral reef drowning in response to meltwater pulse-1A. Quaternary Science Reviews, 175: 60-72. https://doi.org/10.1016/j.quascirev.2017.08.022
Sato, M., Benoit-Bird, K.J., (2017). Spatial variability of deep scattering layers shapes the Bahamian mesopelagic ecosystem. Marine Ecology Progress Series, 580: 69-82. https://doi.org/10.3354/meps12295
Schoening, Timm, Durden, Jennifer, Preuss, Inken, Branzan Albu, Alexandra, Purser, Autun, De Smet, Bart, Dominguez-Carrió, Carlos, Yesson, Chris, de Jonge, Daniëlle, Lindsay, Dhugal, Schulz, Jan, Möller, Klas Ove, Beisiegel, Kolja, Kuhnz, Linda, Hoeberechts, Maia, Piechaud, Nils, Sharuga, Stephanie, Treibitz, Tali, (2017). Report on the Marine Imaging Workshop 2017. Research Ideas and Outcomes, 3: e13820. https://doi.org/10.3897/rio.3.e13820
Scholin, C.A., Birch, J., Jensen, S., Marin III, R., Massion, E., Pargett, D., Preston, C., Roman, B., Ussler III, W., (2017). The quest to develop ecogenomic sensors: A 25-Year history of the Environmental Sample Processor (ESP) as a case study. Oceanography, 30: 100-113. https://doi.org/10.5670/oceanog.2017.427
Sherlock, R. E., Walz, K. R., Schlining, K. L., Robison, B. H., (2017). Morphology, ecology, and molecular biology of a new species of giant larvacean in the eastern North Pacific: Bathochordaeus mcnutti sp. nov.. Marine Biology, 164: 20. http://dx.doi.org/10.1007/s00227-016-3046-0
Smith Jr., K.L., Sherman, A.D., McGill, P.R., Henthorn, R.G., Ferreira, J., Huffard, C.L., (2017). Evolution of monitoring an abyssal time-​series station in the northeast Pacific over 28 years. Oceanography, 30: 72-81. https://doi.org/10.5670/oceanog.2017.425
Straehler-Pohl, I., Matsumoto, G.I., Acevendo, M., (2017). Recognition of the Californian cubozoan population as a new species – Carybdea confusa n. sp. (Cnidaria, Cubozoa, Carybdeida). Plankton and Benthos Research, 12: 129-138. http://doi.org/10.3800/pbr.12.129
Sutton, Tracey T., Clark, Malcolm R. az, Dunn, Daniel C., Halpin, Patrick N., Rogers, Alex D., Guinotte, John, Bograd, Steven J., Angel, Martin V., Perez, Jose Angel A., Wishner, Karen, Haedrich, Richard L., Lindsay, Dhugal J., Drazen, Jeffrey C., Vereshchaka, Alexander, Piatkowski, Uwe, Morato, Telmo, Błachowiak-Samołyk, Katarzyna, Robison, Bruce H., Gjerde, Kristina M., Pierrot-Bults, Annelies, Bernal, Patricio, Reygondeau, Gabriel, Heino, Mikko, (2017). A global biogeographic classification of the mesopelagic zone. Deep Sea Research Part I: Oceanographic Research Papers : . http://dx.doi.org/10.1016/j.dsr.2017.05.006
Symons, W. O., Sumner, E. J., Paull, C. K., Cartigny, M. J. B., Xu, J. P., Maier, K. L., Lorenson, T. D., Talling, P. J., (2017). A new model for turbidity current behavior based on integration of flow monitoring and precision coring in a submarine canyon. Geology, 45: 367-370. http://dx.doi.org/10.1130/G38764.1
Tagliabue, A., Bowie, A. R., Boyd, P. W., Buck, K. N., Johnson, K. S., Saito, M. A., (2017). The integral role of iron in ocean biogeochemistry. Nature, 543: 51-59. http://dx.doi.org/10.1038/nature21058
Takeshita, Y., (2017). Understanding feedbacks between ocean acidification and coral reef metabolism. Journal of Geophyiscal Research: Oceans, 122: 1639-1642. http://doi.org/10.1002/2017JC012740
Thistle, David, Sedlacek, Linda, Carman, Kevin R., Barry, James P., (2017). Influence of habitat heterogeneity on the community structure of deep-sea harpacticoid communities from a canyon and an escarpment site on the continental rise off California. Deep Sea Research Part I: Oceanographic Research Papers : . http://dx.doi.org/10.1016/j.dsr.2017.03.005
Thomas, K. N., Robison, B. H., Johnsen, S., (2017). Two eyes for two purposes: in situ evidence for asymmetric vision in the cockeyed squids Histioteuthis heteropsis and Stigmatoteuthis dofleini. Philosophical Transactions B, 372: 1-9. http://dx.doi.org/10.1098/rstb.2016.0069
Webb, Thomas J., Barry, James P., McClain, Craig R., (2017). Abundance-occupancy relationships in deep sea wood fall communities. Ecography : . http://dx.doi.org/10.1111/ecog.02618
Williams, N. L., Juranek, L. W., Feely, R. A., Johnson, K. S., Sarmiento, J. L., Talley, L. D., Dickson, A. G., Gray, A. R., Wanninkhof, R., Russell, J. L., Riser, S. C., Takeshita, Y., (2017). Calculating surface ocean pCO2 from biogeochemical Argo floats equipped with pH: An uncertainty analysis. Global Biogeochemical Cycles, 31: 591-604. http://dx.doi.org/10.1002/2016GB005541
Winnikoff, J.R., Wilson, T.M., Thuesen, E.V., Haddock, S.H.D., (2017). Enzymes feel the squeeze: biochemical adaptation to pressure in the deep sea. The Biochemist, 39: 26-29. https://www.researchgate.net/publication/322302275_Enzymes_feel_the_squeeze_Biochemical_adaptation_to_pressure_in_the_deep_sea
Zhang, Yanwu, Kieft, Brian, Stanway, M. Jordan, McEwen, Robert S., Hobson, Brett W., Bellingham, James G., Ryan, John P., O'Reilly, Thomas C., Raanan, Ben Y., Messié, Monique, Smith, Jason M., Chavez, Francisco P., (2017). Isotherm tracking by an autonomous underwater vehicle in drift mode. IEEE Journal of Oceanic Engineering , 42: 808-817. http://dx.doi.org/10.1109/JOE.2016.2625058

2016

Anderson, C. R., Kudela, R. M., Kahru, M., Chao, Y., Rosenfeld, L. K., Bahr, F. L., Anderson, D. M., Norris, T. A., (2016). Initial skill assessment of the California Harmful Algae Risk Mapping (C-HARM) system. Harmful Algae, 59: 1-18. http://dx.doi.org/10.1016/j.hal.2016.08.006
Aoyama, M, Abad, M, Anstey, C, Ashraf P, M, Bakir, A, Becker, S, Bell, S, Berdalet, E., Blum, M, Briggs, R, Caradec, F, Cariou, T., Church, M, Coppola, L, Crump, M, Curless, S, Dai, M., Daniel, A, Davis, C , de Santis Braga, E, Solis, M.E., Ekern, L, Faber, D, Fraser, T, Gundersen, K, Jacobsen, S, Knockaert, M, Komada, T, Kralj, M, Kramer, R., Kress, N, Lainela, S, Ledesma, J., Li, X, Lim, J-H, Lohmann, M, Lonborg, C, Ludwichowski, K-U, Mahaffey, C, Malien, F, Margiotta, F, McCormack, T , Murillo, I, Nail, H, Nausch, G, Olafsdottir, S, van Ooijen, J, Paranhos, R, Payne, C, Pierre-Duplessix, O, Prove, G, Rabiller, E, Raimbault, P, Reed, L, Rees, C, Rho, T, Roman, R, Woodward, E.M.S., Sun, J., Szymczycha, B, Takatani, S, Taylor, A., Thamer, P, Torres-Valdes, S, Trahanovsky, K, Waldron, H, Walsham, P, Wang, L, Wang, T, White, L , Yoshimura, T, Zhang, J-Z, (2016). IOCCP-JAMSTEC 2015 Inter-laboratory Calibration Exercise of a Certified Reference Material for Nutrients in Seawater. International Ocean Carbon Coordination Project (IOCCP) Report Number 1/2016 : 176.
Barker, L.D.L., Kim, S.L., Saenz, B. T., Osborne, D.J., Daly, K.L., (2016). Towable instrumentation for use with a hand-deployed remotely operated vehicle. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : .
Barry, James P., Taylor, Josi R., Kuhnz, Linda A., De Vogelaere, Andrew P., (2016). Symbiosis between the holothurian Scotoplanes sp. A and the lithodid crab Neolithodes diomedeae on a featureless bathyal sediment plain. Marine Ecology, 38: e12396. http://dx.doi.org/10.1111/maec.12396
Benoit-Bird, K.J., Lawson, G.L., (2016). Ecological insights from pelagic systems acquired using active acoustic techniques. Annual Reviews of Marine Science, 8: 463-490. http://dx.doi.org/10.1146/annurev-marine-122414-034001
Benoit-Bird, K. J., Southall, B. L., Moline, M. A., (2016). Predator-guided sampling reveals biotic structure in the bathypelagic. Proceedings of the Royal Society B, 283: 20152457. http://dx.doi.org/10.1098/rspb.2015.2457
Bertram, S, Kitts, C., Azevedo, D, Del Vecchio, G, Hopner, B, Wheat, C. G., Kirkwood, W., (2016). A portable ASV prototype for shallow-water science operations. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : .
Biogeochemical-Argo Planning Grou, (2016). The scientific rationale, design and implementation plan for a biogeochemical-Argo float array. : . http://dx.doi.org/10.13155/46601
Bowers, H. A., Marin, R., III, Birch, J. M., Scholin, C. A., Doucette, G. J., (2016). Recovery and identification of Pseudo-nitzschia (Bacillariophyceae) frustules from natural samples acquired using the environmental sample processor. Journal of Phycology, 52: 135-140. http://dx.doi.org/10.1111/jpy.12369
Branham, C.W., Murphy, D., Johnson, K., Jannasch, H., (2016). Optimization of a robust and reliable ISFET sensor for measuring pH in the deep ocean. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761357
Breusing, C., Biastoch, A., Drews, A., Metaxas, A., Jollivet, D., Vrijenhoek, R. C., Bayer, T., Melzner, F., Sayavedra, L., Petersen, J. M., Dubilier, N., Schilhabel, M. B., Rosenstiel, P., Reusch, T. B., (2016). Biophysical and population genetic models predict the presence of “phantom” stepping stones connecting Mid-Atlantic Ridge vent ecosystems. Current Biology, 26: 2257-2267. http://dx.doi.org/10.1016/j.cub.2016.06.062
Brewer, P. G., Peltzer, E. T., (2016). Ocean chemistry, ocean warming, and emerging hypoxia: Commentary. Journal of Geophysical Research-Oceans, 121: 3659-3667. http://dx.doi.org/10.1002/2016jc011651
Bruno, Barbara, Wren, Johanna, Ayau, Jessica, Leon Soon, Sherill, Needham, Heidi, Noa, Keolani, Wood-Charlson, Elisha, Choy, Anela, (2016). Summer Bridge Program establishes nascent pipeline to expand and diversify Hawaii’s Undergraduate Geoscience enrollment. Oceanography, 29: 286–292. http://dx.doi.org/10.5670/oceanog.2016.33
Caress, D. W., Chayes, D.N., (2016). MB-System Version 5.5.2284. Open source software distributed from the MBARI and L-DEO web sites, 2000-2016 : .
Caron, D. A., Alexander, H., Allen, A. E., Archibald, J. M., Armbrust, E. V., Bachy, C., Bell, C. J., Bharti, A., Dyhrman, S. T., Guida, S. M., Heidelberg, K. B., Kaye, J. Z., Metzner, J., Smith, S. R., Worden, A. Z., (2016). Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews Microbiology, 15: 6-20. http://dx.doi.org/10.1038/nrmicro.2016.160
Chadwick, W. W., Paduan, J. B., Clague, D. A., Dreyer, B. M., Merle, S. G., Bobbitt, A. M., Caress, D. W., Philip, B. T., Kelley, D. S., Nooner, S. L., (2016). Voluminous eruption from a zoned magma body after an increase in supply rate at Axial Seamount. Geophysical Research Letters, 43: 12063–12070 . http://dx.doi.org/10.1002/2016GL071327
Chaytor, J. D., Geist, E. L., Paull, C. K., Caress, D. W., Gwiazda, R., Fucugauchi, J. U., Vieyra, M. R., (2016). Source characterization and tsunami modeling of submarine landslides along the Yucatán Shelf/Campeche Escarpment, southern Gulf of Mexico. Pure and Applied Geophysics, 173: 4101-4116. http://dx.doi.org/10.1007/s00024-016-1363-3
Clague, David A., Frey, Frederick A., Garcia, Michael O., Huang, Shichun, McWilliams, Michael, Beeson, Melvin H., (2016). Compositional heterogeneity of the Sugarloaf melilite nephelinite flow, Honolulu Volcanics, Hawai‘i. Geochimica et Cosmochimica Acta, 185: 251-277. http://dx.doi.org/10.1016/j.gca.2016.01.034
Coumans, Jason P., Stix, John, Clague, David A., Minarik, William G., Layne, Graham D., (2016). Melt-rock interaction near the Moho: Evidence from crystal cargo in lavas from near-ridge seamounts. Geochimica et Cosmochimica Acta, 191: 139-164. http://dx.doi.org/10.1016/j.gca.2016.07.017
Dayton, P. K., Hammerstrom, K., Jarrell, S. C., Kim, S., Nordhausen, W., Osborne, D. J., Thrush, S. F., (2016). Unusual coastal flood impacts in Salmon Valley, McMurdo Sound, Antarctica. Antarctic Science, 28: 269-275. http://dx.doi.org/10.1017/S0954102016000171
Douglas, P. M. J., Stolper, D. A., Smith, D. A., Walter Anthony, K. M., Paull, C. K., Dallimore, S., Wik, M., Crill, P. M., Winterdahl, M., Eiler, J. M., Sessions, A. L., (2016). Diverse origins of Arctic and Subarctic methane point source emissions identified with multiply-substituted isotopologues. Geochimica et Cosmochimica Acta, 188: 163-188. http://dx.doi.org/10.1016/j.gca.2016.05.031
Dunlop, Katherine M., van Oevelen, Dick, Ruhl, Henry A., Huffard, Christine L., Kuhnz, Linda A., Smith Jr., Kenneth L., (2016). Carbon cycling in the deep eastern North Pacific benthic food web: Investigating the effect of organic carbon input. Limnology and Oceanography, 61: 1956-1968. http://dx.doi.org/10.1002/lno.10345
Durden, Jennifer M. , Schoening, Timm , Althaus, Franziska , Friedman, Ariell , Garcia, Rafael , Glover, Adrian G. , Greinert, Jens , Jacobsen Stout, Nancy , Jones, Daniel O.B. , Jordt, Anne , Kaeli, Jeffrey W. , Köser, Kevin , Kuhnz, Linda A. , Lindsay, Dhugal , Morris, Kirsty J. , Nattkemper, Tim W. , Osterloff, Jonas , Ruhl, Henry A. , Singh, Hanumant , Tran, Maggie , Bett, Brian J. , (2016). Perspectives in visual imaging for marine biology and ecology: From acquisition to understanding. Oceanography and Marine Biology: An Annual Review, 54 : 1-72. http://dx.doi.org/10.5281/zenodo.202685
Figurski, J. D., Freiwald, J., Lonhart, S. I., Storlazzi, C. D., (2016). Seasonal sediment dynamics shape temperate bedrock reef communities. Marine Ecology Progress Series, 552: 19-29. http://dx.doi.org/10.3354/meps11763
Fossette, Sabrina, Katija, Kakani, Goldbogen, Jeremy A., Bograd, Steven, Patry, Wyatt, Howard, Michael J., Knowles, Thomas, Haddock, Steven H. D., Bedell, Loryn, Hazen, Elliott L., Robison, Bruce H., Mooney, T. Aran, Shorter, K. Alex, Bastian, Thomas, Gleiss, Adrian C., (2016). How to tag a jellyfish? A methodological review and guidelines to successful jellyfish tagging. Journal of Plankton Research, 38: 1347-1363. http://dx.doi.org/10.1093/plankt/fbw073
Francis, W. R., Christianson, L. M., Powers, M. L., Schnitzler, C. E., Haddock, S.H.D., (2016). Non-excitable fluorescent protein orthologs found in ctenophores. BMC Evolutionary Biology, 16: 167. http://dx.doi.org/10.1186/s12862-016-0738-5
Francis, W. R., Powers, M. L., Haddock, S. H. D., (2016). Bioluminescence spectra from three deep-sea polychaete worms. Marine Biology, 163: 2-12. http://dx.doi.org/10.1007/s00227-016-3028-2
Fries, D., Kirkwood, W.J., (2016). Non-Acoustic Sensors (Part B, Chapter 8). Springer Handbook of Ocean Engineering : . http://dx.doi.org/10.1007/978-3-319-16649-0
Gao, Ruohan, Lassiter, J.C., Barnes, J.D., Clague, D.A., Bohrson, W. A., (2016). Geochemical investigation of Gabbroic Xenoliths from Hualalai Volcano: Implications for lower oceanic crust accretion and Hualalai Volcano magma storage system. Earth and Planetary Science Letters, 442: 162-172. http://dx.doi.org/10.1016/j.epsl.2016.02.043
Gasca, R., Haddock, S. H., (2016). The rare deep-living hyperiid amphipod Megalanceoloides remipes (Barnard, 1932): Complementary description and symbiosis. Zootaxa, 4178: 138-144. http://dx.doi.org/10.11646/zootaxa.4178.1.7
Gawryluk, R. M.R., Del Campo, J., Okamoto, N., Strassert, J. F., Lukes, J., Richards, T. A., Worden, A. Z., Santoro, A. E., Keeling, P. J., (2016). Morphological identification and single-cell genomics of marine diplonemids. Current Biology, 26: 3053-3059. http://dx.doi.org/10.1016/j.cub.2016.09.013
Gaylord, B., Kroeker, K. J., Sunday, J. M., Anderson, K. M., Barry, J. P., Brown, N. E., Connell, S. D., Dupont, S., Fabricius, K. E., Hall-Spencer, J. M., Klinger, T., Milazzo, M., Munday, P. L., Russell, B. D., Sanford, E., Schreiber, S. J., Thiyagarajan, V., Vaughan, M. L. H., Widdicombe, S., Harley, C.D.G, (2016). The reality of ocean acidification: Ocean acidification through the lens of ecological theory. . Washington Journal of Environmental Law & Policy, Environmental Law Symposium on Ocean Acidification , 6: 252.
Gill, J., Michael, P., Woodcock, J., Dreyer, B., Ramos, F., Clague, D., Kela, J., Scott, S., Konrad, K., Stakes, D., (2016). Spatial and temporal scale of mantle enrichment at the Endeavour Segment, Juan de Fuca Ridge. Journal of Petrology, 57: 863-896. http://dx.doi.org/10.1093/petrology/egw024
Gomes-Pereira, Jose Nuno, Auger, Vincent, Beisiegel, Kolja, Benjamin, Robert, Bergmann, Melanie, Bowden, David, Buhl-Mortensen, Pal, De Leo, Fabio C., Dionísio, Gisela, Durden, Jennifer M., Edwards, Luke, Friedman, Ariell, Greinert, Jens, Jacobsen Stout, Nancy, Lerner, Steve, Leslie, Murray, Nattkemper, Tim W., Sameoto, Jessica A., Schoening, Timm, Schouten, Ronald, Seager, James, Singh, Hanumant, Soubigou, Olivier, Tojeira, Inês, van den Beld, Inge, Dias, Frederico, Tempera, Fernando, Santos, Ricardo S., (2016). Current and future trends in marine image annotation software. Progress in Oceanography, 149: 106-120. http://dx.doi.org/10.1016/j.pocean.2016.07.005
Gregory, A. C., Solonenko, S. A., Ignacio-Espinoza, J. C., LaButti, K., Copeland, A., Sudek, S., Maitland, A., Chittick, L., Dos Santos, F., Weitz, J. S., Worden, A. Z., Woyke, T., Sullivan, M. B., (2016). Genomic differentiation amongst wild cyanophages despite widespread horizontal gene transfer. BMC Genomics, 17: 930. http://dx.doi.org/10.1186/s12864-016-3286-x
Gwiazda, R., Paull, C.K., Caress, D.W., Lorenson, T., Brewer, P.G., Peltzer, E.T., Walz, P.M., Anderson, K., Lundsten, E.M., (2016). Eel Canyon slump scar and associated fluid venting. Submarine mass movements and their consequences, 7th International Symposium : 411-418. http://dx.doi.org/10.1007/978-3-319-20979-1_41
Hearn, A., Espinoza, E., Green, J.R., Acuña-Marrero, D., Ryan, J.P., (2016). Association of adult female whale sharks with open ocean and coastal upwelling frontal systems in the Eastern Tropical Pacific. Q Science Proceedings, The 4th International Whale Shark Conference : . http://dx.doi.org/10.5339/qproc.2016.iwsc4.24
Herfort, Lydie, Seaton, Charles, Wilkin, Michael, Roman, Brent, Preston, Christina M., Marin, Roman, Seitz, Kiley, Smith, Maria W., Haynes, Vena, Scholin, Christopher A., Baptista, António M., Simon, Holly M., (2016). Use of continuous, real-time observations and model simulations to achieve autonomous, adaptive sampling of microbial processes with a robotic sampler. Limnology and Oceanography: Methods, 14: 50-67. http://dx.doi.org/10.1002/lom3.10069
Hoving, H. J. T., Robison, B. H., (2016). Deep-sea in situ observations of gonatid squid and their prey reveal high occurrence of cannibalism. Deep Sea Research Part I: Oceanographic Research Papers, 116: 94-98. http://dx.doi.org/10.1016/j.dsr.2016.08.001
Huffard, C.L., Kuhnz, L.A., Lemon, L., Sherman, A.D., Smith Jr., K.L., (2016). Demographic indicators of change in a deposit-feeding abyssal holothurian community (Station M, 4000m). Deep Sea Research Part I: Oceanographic Research Papers, 109: 27-39. http://dx.doi.org/10.1016/j.dsr.2016.01.002
Jang, S. J., Park, E., Lee, W. K., Johnson, S. B., Vrijenhoek, R. C., Won, Y. -J., (2016). Population subdivision of hydrothermal vent polychaete Alvinella pompejana across equatorial and Easter Microplate boundaries. BMC Evolutionary Biology, 16: 235. http://dx.doi.org/10.1186/s12862-016-0807-9
Jeon, Yeon Seon, Johnson, Shannon B., Won, Yong-Jin, Vrijenhoek, Robert C., (2016). Complete mitochondrial genome of the headwater livebearer, Poeciliopsis monacha: the mother of clones. Mitochondrial DNA Part B, 1: 793-794. http://dx.doi.org/10.1080/23802359.2016.1197066
Johnson, K.S., Claustre, H., (2016). Bringing biogeochemistry into the Argo age . Eos : . http://dx.doi.org/10.1029/2016EO062427
Johnson, K. S., Jannasch, H. W., Coletti, L. J., Elrod, V. A., Martz, T. R., Takeshita, Y., Carlson, R. J., Connery, J. G., (2016). Deep-Sea DuraFET: A pressure tolerant pH sensor designed for global sensor networks. Analytical Chemistry, 88: 3249-3256. http://dx.doi.org/10.1021/acs.analchem.5b04653
Johnson, Shannon B., Krylova, Elena M., Audzijonyte, Asta, Sahling, Heiko, Vrijenhoek, Robert C., (2016). Phylogeny and origins of chemosynthetic vesicomyid clams. Systematics and Biodiversity : 1-15. http://dx.doi.org/10.1080/14772000.2016.1252438
Judge, J., Barry, J. P., (2016). Macroinvertebrate community assembly on deep-sea wood falls in Monterey Bay is strongly influenced by wood type. Ecology, 97: 3031-3043. http://dx.doi.org/10.1002/ecy.1546
Katija, Kakani, Sherman, Alana, Robison, Bruce, (2016). Video: DeepPIV: Fluid visualizations from the ocean surface to the seafloor. 69th Annual Meeting of the APS Division of Fluid Dynamics : . http://dx.doi.org/10.1103/APS.DFD.2016.GFM.V0085
Kavanaugh, M. T., Oliver, M. J., Chavez, F. P., Letelier, R. M., Muller-Karger, F. E., Doney, S. C., (2016). Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation. ICES Journal of Marine Science, 73: 1839-1850. http://dx.doi.org/10.1093/icesjms/fsw086
Kim, T. W., Barry, J. P., (2016). Boldness in a deep sea hermit crab to simulated tactile predator attacks is unaffected by ocean acidification. Ocean Science Journal, 51: 381-386. http://dx.doi.org/10.1007/s12601-016-0034-8
Kirkwood, W., (2016). Deep sea laser Raman - past, present and future developments for in situ chemical analysis and applications. Offshore Technology Conference Asia : .
Kroeker, K. J., Sanford, E., Rose, J. M., Blanchette, C. A., Chan, F., Chavez, F. P., Gaylord, B., Helmuth, B., Hill, T. M., Hofmann, G. E., McManus, M. A., Menge, B. A., Nielsen, K. J., Raimondi, P. T., Russell, A. D., Washburn, L., (2016). Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability. Ecology Letters, 19: 771-779. http://dx.doi.org/10.1111/ele.12613
Laguionie-Marchais, Claire, Paterson, Gordon L. J., Bett, Brian J., Smith, Kenneth L., Ruhl, Henry A., (2016). Inter-annual species-level variations in an abyssal polychaete assemblage (Sta. M, NE Pacific, 4000m). Progress in Oceanography, 140: 43-53. http://dx.doi.org/10.1016/j.pocean.2015.10.006
Lord, Joshua P., (2016). Impact of seawater temperature on growth and recruitment of invasive fouling species at the global scale. Marine Ecology : . http://dx.doi.org/10.1111/maec.12404
Maier, K. L., Brothers, D. S., Paull, C.K., McGann, M., Caress, D. W., Conrad, J. E., (2016). Records of continental slope sediment flow morphodynamic responses to gradient and active faulting from integrated AUV and ROV data, offshore Palos Verdes, southern California borderland. Marine Geology : . http://dx.doi.org/10.1016/j.margeo.2016.10.001
Mariano-Matias, M., Gaxiola-Castro, G., De la Cruz-Orozco, M. E., Chavez, F. P., (2016). Seasonal air–sea CO2 fluxes in the southern California Current off the Baja California Peninsula (Mexico). Ciencias Marinas, 42: 157-177. http://dx.doi.org/10.7773/cm.v42i3.2651
Martin, E.J., Caress, D.W., Thomas, H., Hobson, B., Henthorn, R., Risi, M., Paull, C. K., Barry, J.P., Troni, G, (2016). Enabling new techniques in environmental assessment through multi-sensor hydrography. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761487
Martini, S., Michotey, V., Casalot, L., Bonin, P., Guasco, S., Garel, M., Tamburini, C., (2016). Bacteria as part of bioluminescence emission at the deep ANTARES station (North-Western Mediterranean Sea) during a one-year survey. Deep Sea Research Part I: Oceanographic Research Papers, 116: 33-40. http://dx.doi.org/10.1016/j.dsr.2016.07.014
Masmitjà, I, Gomariz,S. , Del Rio, J. , Kieft, B., O'Reilly, T, (2016). Range-only benthic rover localization off the central California coast. Instrumentation Viewpoint, 19: 86-87.
Masmitjà, I, Gomáriz, S., del Rio, J., Kieft, B., O'Reilly, T, (2016). Range-only underwater target localization: Path characterization. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-7.
Masmitjà , Ivan, Pallarés, Oriol , Gomáriz, Spartacus , del Río, Joaquín , O'Reilly, T., Kieft, B., (2016). Range-only underwater target localization: Error characterization. 21st IMEKO TC4 International Symposium and 19th International Workshop on ADC Modelling and Testing Understanding the World through Electrical and Electronic Measurement : 267-271.
McClain, C. R., Barry, J. P., Eernisse, D., Horton, T., Judge, J., Kakui, K., Mah, C., Waren, A., (2016). Multiple processes generate productivity–diversity relationships in experimental wood-fall communities. Ecology, 97: 885-898. http://dx.doi.org/10.1890/15-1669.1
McGill, Paul R., Henthorn, Richard G., Bird, Larry E., Huffard, Christine L., Klimov, Dennis V., Smith Jr., Kenneth L., (2016). Sedimentation event sensor: New ocean instrument for in situ imaging and fluorometry of sinking particulate matter. Limnology and Oceanography: Methods, 14: 853-863. http://dx.doi.org/10.1002/lom3.10131
Moline, Mark A, Benoit-Bird, Kelly, (2016). Sensor fusion and autonomy as a powerful combination for biological assessment in the marine environment. Robotics, 5: 4. http://dx.doi.org/10.3390/robotics5010004
Monier, A., Worden, A. Z., Richards, T. A., (2016). Phylogenetic diversity and biogeography of the Mamiellophyceae lineage of eukaryotic marine phytoplankton across the oceans. Environmental Microbiology Reports, 8: 461-469. http://dx.doi.org/10.1111/1758-2229.12390
Orsi, W. D., Smith, J. M., Liu, S., Liu, Z., Sakamoto, C. M., Wilken, S., Poirier, C., Richards, T. A., Keeling, P. J., Worden, A. Z., Santoro, A. E., (2016). Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean. ISME Journal, 10: 2158-2173. http://dx.doi.org/10.1038/ismej.2016.20
Paduan, J.B., Clague, D.A., Caress, D.W., Thomas, H., (2016). High-resolution AUV mapping and ROV sampling of mid-ocean ridges. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761264
Patterson, J., Bickel, A., (2016). Communicating local relevance of ocean observations: Integrating real-time ocean sensor data visualizations, online communications, and ocean issues to engage public audiences. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761325
Paull, C.K., Anderson, K., Caress, D.W., Lundsten, E., Gwiazda, R., (2016). Fine-scale morphology of Tubeworm Slump, Monterey Canyon. Submarine Mass Movements and Their Consequences, 7th International Symposium, 41: 155-162. http://dx.doi.org/10.1007/978-3-319-20979-1_15
Pearlman, J., Jirka, Simon, del Rio, J., Delory, E., Frommhold, L., Martinez, S., O'Reilly, T., (2016). Oceans of Tomorrow sensor interoperability for in-situ ocean monitoring. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761404
Peltzer, Edward T., Zhang, Xin, Walz, Peter M., Luna, Melissa, Brewer, Peter G., (2016). In situ Raman measurement of HS and H2S in sediment pore waters and use of the HS:H2S ratio as an indicator of pore water pH. Marine Chemistry, 184: 32-42. http://dx.doi.org/10.1016/j.marchem.2016.05.006
Plant, J. N., Johnson, K. S., Sakamoto, C. M., Jannasch, H. W., Coletti, L. J., Riser, S. C., Swift, D. D., (2016). Net community production at Ocean Station Papa observed with nitrate and oxygen sensors on profiling floats. Global Biogeochemical Cycles, 30: 859-879. http://dx.doi.org/10.1002/2015GB005349
Poore, K., Kitts, C., Wheat, G., Kirkwood, W., (2016). A small scale ROV for shallow-water science operations. OCEANS 2016 MTS/IEEE Monterey : . http://dx.doi.org/10.1109/OCEANS.2016.7761405
Port, J. A., O'Donnell, J. L., Romero-Maraccini, O. C., Leary, P. R., Litvin, S. Y., Nickols, K. J., Yamahara, K. M., Kelly, R. P., (2016). Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA. Molecular Ecology, 25: 527-541. http://dx.doi.org/10.1111/mec.13481
Puga-Bernabéu, Ángel, Webster, Jody M., Braga, Juan C., Clague, David A., Dutton, Andrea, Eggins, Stephen, Fallon, Stewart, Jacobsen, Geraldine, Paduan, Jennifer B., Potts, Donald C., (2016). Morphology and evolution of drowned carbonate terraces during the last two interglacial cycles, off Hilo, NE Hawaii. Marine Geology, 371: 57-81. http://dx.doi.org/10.1016/j.margeo.2015.10.016
Pugh, P. R., Haddock, S. H.D., (2016). A description of two new species of the genus Erenna (Siphonophora, Physonectae, Erennidae), with notes on recently collected specimens of other Erenna species. Zootaxa, 4189: 401-446. http://dx.doi.org/10.11646/zootaxa.4189.3.1
Raanan, B.Y., Bellingham, J.G., Zhang, Y., Kemp, M., Kieft, B., Singh, H., Girdhar, Y., (2016). Automatic fault diagnosis for autonomous underwater vehicles using online topic models. OCEANS 2016 MTS/IEEE Monterey : . http://dx.doi.org/10.1109/OCEANS.2016.7761139
Radenac, Marie-Hélène, Léger, Fabien, Messié, Monique, Dutrieux, Pierre, Menkes, Christophe, Eldin, Gérard, (2016). Wind-driven changes of surface current, temperature, and chlorophyll observed by satellites north of New Guinea. Journal of Geophysical Research: Oceans, 121: 2231-2252. http://dx.doi.org/10.1002/2015JC011438
Reichert, Amber N., Lundsten, Lonny, Ebert, David A., (2016). First North Pacific records of the pointy nosed blue chimaera, Hydrolagus cf. trolli (Chondrichthyes: Chimaeriformes: Chimaeridae). Marine Biodiversity Records, 9: 90. http://dx.doi.org/10.1186/s41200-016-0095-5
Reisenbichler, K.R., Chaffey, M.R., Cazenave, F., McEwen, R.S., Henthorn, R.G., Sherlock, R.E., Robison, B.H., (2016). Automating MBARI's midwater time-series video surveys: The transition from ROV to AUV. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761499
Ruhl, H.A., Durden, Jennifer M., Jones, D., Schoening, Timm, Nattkemper, Tim W., Cline, D., Edgington, D., (2016). Computer vision and machine learning needs for research in biological oceanography. 2nd Workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI 2016) : .
Ryan, J., Cline, D., Dawe, C., McGill, P., Zhang, Y., Joseph, J., Margolina, T., Caillat, M., Fischer, M., DeVogelaere, A., Stimpert, A., Southall, B., (2016). New passive acoustic monitoring in Monterey Bay National Marine Sanctuary: Exploring natural and anthropogenic sounds in a deep soundscape. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : .
Santoferrara, L. F., Bachy, C., Alder, V. A., Gong, J., Kim, Y. O., Saccá, A., da Silva Neto, I. D., Struder-Kypke, M. C., Warren, A., Xu, D., Yi, Z., Agatha, S., (2016). Updating biodiversity studies in loricate protists: The case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea). Journal of Eukaryotic Microbiology, 63: 651-656. http://dx.doi.org/10.1111/jeu.12303
Shafait, Faisal, Mian, Amal, Shortis, Mark, Ghanem, Bernard, Culverhouse, P.F., Edgington, D., Cline, D., Ravanbakskh, M., Seager, J., Harvey, E.S., (2016). Fish identification from videos captured in uncontrolled underwater environments. ICES Journal of Marine Science, 73: 2737-2746 . http://dx.doi.org/10.1093/icesjms/fsw106
Sherlock, R. E., Walz, K. R., Robison, B. H., (2016). The first definitive record of the giant larvacean, Bathochordaeus charon, since its original description in 1900 and a range extension to the northeast Pacific Ocean. Marine Biodiversity Records, 9: . http://dx.doi.org/10.1186/s41200-016-0075-9
Sickmann, Z., Paull, C. K., Graham, S.A., (2016). Detrital-zircon mixing and partitioning in fluvial to deep marine systems, central California, U.S.A.. Journal of Sedimentary Research (SEPM), 86: 1298-1307. http://dx.doi.org/10.2110/jsr.2016.78
Simmons, M. P., Sudek, S., Monier, A., Limardo, A. J., Jimenez, V., Perle, C. R., Elrod, V. A., Pennington, J. T., Worden, A. Z., (2016). Abundance and biogeography of picoprasinophyte ecotypes and other phytoplankton in the Eastern North Pacific Ocean. Applied and Environmental Microbiology, 82: 1693-1705. http://dx.doi.org/10.1128/AEM.02730-15
Smith Jr., K.L., Huffard, C.L., Sherman, A.D., Ruhl, H.A., (2016). Decadal change in sediment community oxygen consumption in the abyssal northeast Pacific. Aquatic Geochemistry, 22: . http://dx.doi.org/10.1007/s10498-016-9293-3
Stocks, K., Jacobsen Stout, N, Shanks ,T.M. , (2016). Information management strategies for deep‐sea biology . Biological Sampling in the Deep Sea : 368-385.
Sunday, Jennifer M., Fabricius, Katharina E., Kroeker, Kristy J., Anderson, Kathryn M., Brown, Norah E., Barry, James P., Connell, Sean D., Dupont, Sam, Gaylord, Brian, Hall-Spencer, Jason M., Klinger, Terrie, Milazzo, Marco, Munday, Philip L., Russell, Bayden D., Sanford, Eric, Thiyagarajan, Vengatesen, Vaughan, Megan L. H., Widdicombe, Stephen, Harley, Christopher D. G., (2016). Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nature Climate Change, 7: 81-85. http://dx.doi.org/10.1038/nclimate3161
Takeshita, Yuichiro, Martz, Todd R., Coletti, Luke J., Dickson, Andrew G., Jannasch, Hans W., Johnson, Kenneth S., (2016). The effects of pressure on pH of Tris buffer in synthetic seawater. Marine Chemistry, 188: 1-5. http://dx.doi.org/10.1016/j.marchem.2016.11.002
Thys, Tierney, Ryan, John P., Weng, Kevin C., Erdmann, Mark, Tresnati, Joeharnani, (2016). Tracking a marine ecotourism star: Movements of the short ocean sunfish Mola ramsayi in Nusa Penida, Bali, Indonesia. Journal of Marine Biology, 3: 1-6. http://dx.doi.org/10.1155/2016/8750193
van Baren, Marijke J., Bachy, Charles, Reistetter, Emily Nahas, Purvine, Samuel O., Grimwood, Jane, Sudek, Sebastian, Yu, Hang, Poirier, Camille, Deerinck, Thomas J., Kuo, Alan, Grigoriev, Igor V., Wong, Chee-Hong, Smith, Richard D., Callister, Stephen J., Wei, Chia-Lin, Schmutz, Jeremy, Worden, Alexandra Z., (2016). Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics, 17: 1-22. http://dx.doi.org/10.1186/s12864-016-2585-6
Waldmann, C., Kier, T.M., Kirkwood, W.S., Meckel, S., (2016). Performance data of a pneumatic variable buoyancy engine for a newly designed underwater glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761225
Waltman, P. H., Guo, J., Reistetter, E. N., Purvine, S., Ansong, C. K., van Baren, M. J., Wong, C. H., Wei, C. L., Smith, R. D., Callister, S. J., Stuart, J. M., Worden, A. Z., (2016). Identifying aspects of the post-transcriptional program governing the proteome of the green alga Micromonas pusilla. PLoS One, 11: e0155839. http://dx.doi.org/10.1371/journal.pone.0155839
Williams, N. L., Juranek, L. W., Johnson, K. S., Feely, R. A., Riser, S. C., Talley, L. D., Russell, J. L., Sarmiento, J. L., Wanninkhof, R., (2016). Empirical algorithms to estimate water column pH in the Southern Ocean. Geophysical Research Letters, 43: 3415-3422. http://dx.doi.org/10.1002/2016GL068539
Worden, A. Z., Wilken, S., (2016). A plankton bloom shifts as the ocean warms. Science, 354: 287-288. http://dx.doi.org/10.1126/science.aaj1751
Zhang, Y., Bellingham, J.G., Ryan, J.P., Kieft, B., Stanway, M. J., (2016). Autonomous four-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle. Journal of Field Robotics, 33: 67-81. http://dx.doi.org/10.1002/rob.21617
Zhang, Y., Kieft, B., Rueda, C., O'Reilly, T., Ryan, J., Maughan, T., Wahl, C., Chavez, F., (2016). Autonomous front tracking by a Wave Glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761070
Ziccarelli, Lisa, Dellor, Roger, Johnson, Richard, Schmitz, Heike, O'Reilly, Tom, Chavez, Francisco, (2016). A novel method of obtaining near real-time observations of phytoplankton from a mobile autonomous platform. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-5. http://dx.doi.org/10.1109/OCEANS.2016.7761230

2015

Aylward, F.O., Eppley, J.M., Smith, J.M., Chavez, F.P., Scholin, C.A., DeLong, E.F., (2015). Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences, 112: 5443-5448. http://dx.doi.org/10.1073/pnas.1502883112
Baldwin Fergus, J.L., Johnsen, S., Osborn, K.J., (2015). A unique apposition compound eye in the mesopelagic hyperiid amphipod Paraphronima gracilis. Current Biology, 25: 473-478. http://dx.doi.org/10.1016/j.cub.2014.12.010
Bradley, C.J., Wallsgrove, N.J., Choy, C.A., Drazen, J.C., Hetherington, E.D., Hoen, D.K., Popp, B.N., (2015). Trophic position estimates of marine teleosts using amino acid compound specific isotopic analysis. Limnology and Oceanography: Methods, 13: 476-493. http://dx.doi.org/10.1002/lom3.10041
Breusing, C., Johnson, S.B., Tunnicliffe, V., Vrijenhoek, R.C. , (2015). Population structure and connectivity in Indo-Pacific deep-sea mussels of the Bathymodiolus septemdierum complex. Conservation Genetics , 16: 1415-1430. https://doi.org/10.1007/s10592-015-0750-0
Brewer, Peter G., Peltzer, Edward T., Ryan, John, Kirkwood, William J., Hofmann, Andreas F., (2015). Ocean chemistry and the speed of sound in seawater. Marine Chemistry, 177: 591-606. http://dx.doi.org/10.1016/j.marchem.2015.09.009
Brothers, D.S., Conrad, J.E., Maier, K.L., Paull, C.K., McGann, M., Caress, D.W., (2015). The Palos Verdes Fault offshore Southern California: Late Pleistocene to present tectonic geomorphology, seascape evolution, and slip rate estimate based on AUV and ROV surveys. Journal of Geophysical Research: Solid Earth, 120: 4734-4758. http://dx.doi.org/10.1002/2015jb011938
Caress, D.W., Chayes, D.N., (2015). MB-System Version 5.5.2252. Open source software distributed from the MBARI and L-DEO web sites, 2000-2015 : .
Choy, C.A., Popp, B.N., Hannides, C.C.S., Drazen, J.C., (2015). Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography, 60: 1156-1171. http://dx.doi.org/10.1002/lno.10085
Cline, D.E., Edgington, D.R., (2015). A detection, tracking, and classification system for underwater images. . Visual observation and analysis of animal and insect behavior (VAIB). 20th International Conference on Pattern Recognition (ICPR 2010) : .
Coumans, Jason P., Stix, John, Clague, David A., Minarik, William G., (2015). The magmatic architecture of Taney Seamount-A, NE Pacific Ocean. Journal of Petrology, 56: 1037-1067. http://dx.doi.org/10.1093/petrology/egv027
Cousens, B.L., Clague, D.A., (2015). Shield to rejuvenated stage volcanism on Kauai and Niihau, Hawaiian Islands. Journal of Petrology, 56: 1547-1584. http://dx.doi.org/10.1093/petrology/egv045
Dallimore, S.R., Paull, C.K., Riedel, M., Jin, Y.K., Taylor, A.E., Melling, H., Kopf, A., Villinger, H., Côté, M.M, (2015). Geohazard investigations of permafrost and permafrost gas hydrates in the outer shelf and upper slope of the Beaufort Sea. Canadian Permafrost Conference, Canadian Geotechnical Conference : .
Das, J., Py, F., Harvey, J.B.J., Ryan, J.P., Gellene, A., Graham, R., Caron, D.A., Rajan, K., Sukhatme, G.S., (2015). Data-driven robotic sampling for marine ecosystem monitoring. The International Journal of Robotics Research, 34: 1435-1452. http://dx.doi.org/10.1177/0278364915587723
Derelle, E., Monier, A., Cooke, R., Worden, A.Z., Grimsley, N.H., Moreau, H., (2015). Diversity of viruses infecting the green microalga Ostreococcus lucimarinus. Journal of Virology, 89: 5812-5821. http://dx.doi.org/10.1128/JVI.00246-15
Dunlop, K.M., Kuhnz, L.A., Ruhl, H.A., Huffard, C.L., Caress, D.W., Henthorn, R.G., Hobson, B.W., McGill, P., Smith Jr., K.L., (2015). An evaluation of deep-sea benthic megafauna length measurements obtained with laser and stereo camera methods. Deep Sea Research I, 96: 38-48. http://dx.doi.org/10.1016/j.dsr.2014.11.003
Dunn, Casey W., Leys, Sally P., Haddock, S.H.D., (2015). The hidden biology of sponges and ctenophores. Trends in Ecology & Evolution, 30: 282-291. http://dx.doi.org/10.1016/j.tree.2015.03.003
Francis, W.R., Shaner, N.C., Christianson, L.M., Powers, M.L., Haddock, S.H.D., (2015). Occurrence of isopenicillin-N-synthase homologs in bioluminescent ctenophores and implications for coelenterazine biosynthesis. PLoS One, 10: e0128742. http://dx.doi.org/10.1371/journal.pone.0128742
Gasca, R., Suárez-Morales, E., Haddock, S.H.D., (2015). Sapphirina irisDana, 1849 and S. sinuicaudaBrady, 1883 (Copepoda, Cyclopoida): predators of salps in Monterey Bay and the Gulf of California. Crustaceana, 88: 689-699. http://dx.doi.org/10.1163/15685403-00003438
Gaylord, B., Kroeker, K. J., Sunday, J. M., Anderson, K. M., Barry, J. P., Brown, N. E., Connell, S. D., Dupont, S., Fabricius, K. E., Hall-Spencer, J. M., Klinger, T., Milazzo, M., Munday, P. L., Russell, B. D., Sanford, E., Schreiber, S. J., Thiyagarajan, V., Vaughan, M. L. H., Widdicombe, S., Harley, C. D. G., (2015). Ocean acidification through the lens of ecological theory. Ecology, 96: 3-15. http://dx.doi.org/10.1890/14-0802.1
Gehlen, M., Séférian, R., Jones, D.O.B., Roy, T., Roth, R., Barry, J., Bopp, L., Doney, S.C., Dunne, J.P., Heinze, C., Joos, F., Orr, J.C., Resplandy, L., Segschneider, J., Tjiputra, J., (2015). Projected pH reductions by 2100 might put deep North Atlantic biodiversity at risk. Biogeosciences, 11: 6955-6967. http://dx.doi.org/10.5194/bg-11-6955-2014
Gwiazda, R., Paull, C.K., Ussler, W., Alexander, C.R., (2015). Evidence of modern fine-grained sediment accumulation in the Monterey Fan from measurements of the pesticide DDT and its metabolites. Marine Geology, 363: 125-133. http://dx.doi.org/10.1016/j.margeo.2015.02.006
Haddock, S.H.D., Dunn, Casey W., (2015). Fluorescent proteins function as a prey attractant: Experimental evidence from the hydromedusa Olindias formosus and other marine organisms. Biology Open : . http://dx.doi.org/10.1242/bio.012138
Helz, R.T., Clague, D.A., Mastin, L.G., Rose, T.R., (2015). Evidence for large compositional ranges in coeval melts erupted from Kilauea’s summit reservoir. Hawaiian Volcanoes: From Source to Surface, 208: 125-145.
Hoving, H.J.T., Laptikhovsky, V.V., Robison, B.H., (2015). Vampire squid reproductive strategy is unique among coleoid cephalopods. Current Biology, 25: R322-323. http://dx.doi.org/10.1016/j.cub.2015.02.018
Hughes, B.B., Levey, M.D., Fountain, M.C., Carlisle, A.B., Chavez, F.P., Gleason, M.G., (2015). Climate mediates hypoxic stress on fish diversity and nursery function at the land-sea interface. Proceedings of the National Academy of Sciences, 112: 8025-8030. http://dx.doi.org/10.1073/pnas.1505815112
Johnson, Kenneth S., Plant, Joshua N., Riser, Stephen C., Gilbert, Denis, (2015). Air oxygen calibration of oxygen optodes on a profiling float array. Journal of Atmospheric and Oceanic Technology, 32: 2160-2172. http://dx.doi.org/10.1175/jtech-d-15-0101.1
Katija, K., (2015). Morphology alters fluid transport and the ability of organisms to mix oceanic waters. Integrative and Comparative Biology, 55: 698-705. http://dx.doi.org/10.1093/icb/icv075
Katija, K., Colin, S.P., Costello, J.H., Jiang, H., (2015). Ontogenetic propulsive transitions by medusae Sarsia tubulosa . Journal of Experimental Biology, 218: 2333-2343. http://dx.doi.org/10.1242/jeb.115832
Kim, T.W., Taylor, J., Lovera, C., Barry, J.P., (2015). CO2-driven decrease in pH disrupts olfactory behaviour and increases individual variation in deep-sea hermit crabs. ICES Journal of Marine Science : . http://dx.doi.org/10.1093/icesjms/fsv019
Kirkwood, W.J., (2015). FOCE: The evolution of in situ Free Ocean CO2 Enrichment experiments.. Proceedings of the Institute of Electrical and Electronics Engineers International Underwater Technology : 1-10. http://dx.doi.org/10.1109/UT.2015.7108322
Kirkwood, W.J., (2015). Use of ocean related related challenges in engineering education. OCEANS 2015 : 1-6. http://dx.doi.org/10.1109/OCEANS-Genova.2015.7271416
Kirkwood, W.J., Walz, P.M., Peltzer, E.T., Barry, J.P., Herlien, R.A., Headley, K.L., Kecy, C., Matsumoto, G.I., Maughan, T., O’Reilly, T.C., Salamy, K.A., Shane, F., Brewer, P.G., (2015). Design, construction, and operation of an actively controlled deep-sea CO2 enrichment experiment using a cabled observatory system. Deep Sea Research Part I: Oceanographic Research Papers, 97: 1-9. http://dx.doi.org/10.1016/j.dsr.2014.11.005
Kuhnz, L.A. , Buck, K., Lovera, C., Whaling, P.J. , Barry, J.P. , (2015). Potential impacts of the Monterey Accelerated Research System (MARS) Cable on the seabed and benthic faunal assemblages. : 71.
Laguionie-Marchais, C., Kuhnz, L.A., Huffard, C.L., Ruhl, H.A., Smith, K.L., Jr., (2015). Spatial and temporal variation in sponge spicule patches at Station M, northeast Pacific. Marine Biology, 162: 617-624. http://dx.doi.org/10.1007/s00227-014-2609-1
Lecher, A. L., Mackey, K., Kudela, R., Ryan, J., Fisher, A., Murray, J., Paytan, A., (2015). Nutrient loading through submarine groundwater discharge and phytoplankton growth in Monterey Bay, CA. Environmental Science & Technology, 49: 6665-6673. http://dx.doi.org/10.1021/acs.est.5b00909
Limardo, A.J., Worden, A.Z., (2015). Microbiology: Exclusive networks in the sea. Nature, 522: 36-37. http://dx.doi.org/10.1038/nature14530
Liu, H., Cai, S., Zhang, H., Vrijenhoek, R.C., (2015). Complete mitochondrial genome of hydrothermal vent clam Calyptogena magnifica. Mitochondrial DNA : 1-3. http://dx.doi.org/10.3109/19401736.2015.1089488
Lopez, P., O'Reilly, T.C., Klimov, D., (2015). Cytometers set sail with sea-going mobile robots. Marine Technology Society Journal, 49: 17-26. http://dx.doi.org/10.4031/mtsj.49.3.9
Mah, Christopher, Linse, Katrin, Copley, Jon, Marsh, Leigh, Rogers, Alex, Clague, David, Foltz, David, (2015). Description of a new family, new genus, and two new species of deep-sea Forcipulatacea (Asteroidea), including the first known sea star from hydrothermal vent habitats. Zoological Journal of the Linnean Society, 174: 93-113. http://dx.doi.org/10.1111/zoj.12229
Matsumoto, G.I., (2015). A different approach to the research internship. Marine Technology Society Journal, 49: 35-44. http://dx.doi.org/10.4031/mtsj.49.4.1
Messié, M., Chavez, F.P., (2015). Seasonal regulation of primary production in eastern boundary upwelling systems. Progress in Oceanography, 134: 1-18. http://dx.doi.org/10.1016/j.pocean.2014.10.011
Miljutin, Dmitry, Miljutina, Maria, Messié, Monique, (2015). Changes in abundance and community structure of nematodes from the abyssal polymetallic nodule field, Tropical Northeast Pacific. Deep Sea Research Part I: Oceanographic Research Papers, 106: 126-135. http://dx.doi.org/10.1016/j.dsr.2015.10.009
Mooney, T. Aran, Katija, Kakani, Shorter, K. Alex, Hurst, Thomas, Fontes, Jorge, Afonso, Pedro, (2015). ITAG: an eco-sensor for fine-scale behavioral measurements of soft-bodied marine invertebrates. Animal Biotelemetry, 3: . http://dx.doi.org/10.1186/s40317-015-0076-1
O'Reilly, T., Kieft, B., Chaffey, M., (2015). Communications relay and autonomous tracking applications for Wave Glider. OCEANS 2015-Genova : 1-6.
Orsi, W.D., Smith, J.M., Wilcox, H.M., Swalwell, J.E., Carini, P., Worden, A.Z., Santoro, A.E., (2015). Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. ISME Journal, 9: 1747-1763. http://dx.doi.org/10.1038/ismej.2014.260
Pargett, D.M., Birch, J.M., Preston, C.M., Ryan, J.P., Zhang, Y., Scholin, C.A., (2015). Development of a mobile ecogenomic sensor. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-6.
Paull, C. K., Caress, D. W., Thomas, H., Lundsten, E., Anderson, K., Gwiazda, R., Riedel, M., McGann, M., Herguera, J. C., (2015). Seafloor geomorphic manifestations of gas venting and shallow subbottom gas hydrate occurrences. Geosphere, 11: 491-513. http://dx.doi.org/10.1130/ges01012.1
Paull, C.K., Dallimore, S. R., Caress, D. W., Gwiazda, R., Melling, H., Riedel, M., Jin, Y. K., Hong, J. K., Kim, Y. G., Graves, D., Sherman, A., Lundsten, E., Anderson, K., Lundsten, L., Villinger, H., Kopf, A., Johnson, S.B., Hughes Clarke, J., Blasco, S., Conway, K., Neelands, P., Thomas, H., Côté, M., (2015). Active mud volcanoes on the continental slope of the Canadian Beaufort Sea. Geochemistry, Geophysics, Geosystems, 16: 3160-3181. http://dx.doi.org/10.1002/2015GC005928
Pearse, J.S., Doyle, W.T., Pearce, V.B., Gowing, M.M., Pennington, J.T., Danner, E., Wasser, A, (2015). Long-term monitoring of surfgrass meadows in the Monterey Bay National Marine Sanctuary: Recovery followed by stability after the termination of a domestic sewage discharge. Marine Sanctuaries Conservation Series ONMS, 15-10: .
Pennington, J.T., Blum, M., Chavez, F.P., (2015). Seawater sampling by an autonomous underwater vehicle: “Gulper” sample validation for nitrate, chlorophyll, phytoplankton, and primary production. Limnology and Oceanography: Methods, 14: 14-23. http://dx.doi.org/10.1002/lom3.10065
Plesch, Andreas, McCann, M., (2015). The X3D geospatial component: X3DOM implementation of GeoOrigin, GeoLocation, GeoViewpoint, and GeoPositionInterpolator nodes.. Proceedings of the 20th International Conference on 3D Web Technology (Web3D '15) : 31-37. http://dx.doi.org/10.1145/2775292.2775315
Pomponi, S.A., Titley, D.W., Boyle, E., Briscoe, M., Davis, R.E., Edwards, M., Feeley, M.H., Forsyth, D., Liss, P., Lozier, S., Marinelli, R., McCarthy, J.J., Mix, A., Murawski, S.A., Paine, R.T., Paull, C., Walsh, D., Ward, B.B., Yoder, J.A., Young, W.R., (2015). Sea Change: 2015-2025 Decadal Survey of Ocean Sciences. : 146. http://dx.doi.org/10.17226/21655
Portner, R.A., Clague, D.A., Helo, C., Dreyer, B.M., Paduan, J.B., (2015). Contrasting styles of deep-marine pyroclastic eruptions revealed from Axial Seamount push core records. Earth and Planetary Science Letters, 423: 219-231. http://dx.doi.org/10.1016/j.epsl.2015.03.043
Raanan, B.Y., Bellingham, J., Zhang, Y., Kieft, B., Stanway, M.J., McEwan, R., Hobson, B., (2015). A real-time vertical plane flight anomaly detection system for a long range autonomous underwater vehicle. Proceedings of the Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans Conference : 1-6.
Raskoff, K.A., Matsumoto, G.I., (2015). Caveat lector: The perils of critical thinking for today’s students. California Classroom Science, 27: .
Ribalet, F., Swalwell, J., Clayton, S., Jimenez, V., Sudek, S., Lin, Y., Johnson, Z. ., Worden, A.Z., Armbrust, E.V., (2015). Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. Proceedings of the NationalAcademy of Sciences of the United States of America, 112: 8008-8012. http://dx.doi.org/10.1073/pnas.1424279112
Rouse, G. W., Wilson, N. G., Carvajal, J. I., Vrijenhoek, R. C., (2015). New deep-sea species of Xenoturbella and the position of Xenacoelomorpha. Nature, 530: 94-97. http://dx.doi.org/10.1038/nature16545
Rouse, G.W., Wilson, N.G., Worsaae, K., Vrijenhoek, R.C., (2015). A dwarf male reversal in bone-eating worms. Current Biology, 25: 236-241. http://dx.doi.org/10.1016/j.cub.2014.11.032
Sackett, D.K., Drazen, J.C., Choy, C.A., Popp, B., Pitz, G.L., (2015). Mercury sources and trophic ecology for Hawaiian bottomfish. Environmental Science & Technology, 49: 6909-6918. http://dx.doi.org/10.1021/acs.est.5b01009
Sanamyan, N.P., Sanamyan, K.E., Lundsten, L., (2015). Two new deepwater sea anemones (Cnidaria: Anthozoa: Actiniaria) Sicyonis heliodiscus sp.n. (Actinostolidae) and Hormathia pacifica sp.n. (Hormathiidae) from Pacific. Invertebrate Zoology, 12: 131-149.
Sassoubre, L. M., Yamahara, K. M., Boehm, A. B., (2015). Temporal stability of the microbial community in sewage-polluted seawater exposed to natural sunlight cycles and marine microbiota. Applied and Environmental Microbiology, 81: 2107-2116. http://dx.doi.org/10.1128/AEM.03950-14
Seegers, Bridget N., Birch, James M., Marin, Roman, Scholin, Chris A., Caron, David A., Seubert, Erica L., Howard, Meredith D. A., Robertson, George L., Jones, Burton H., (2015). Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography, 60: 754-764. http://dx.doi.org/10.1002/lno.10082
Sevadjian, Jeff C., McPhee-Shaw, Erika E., Raanan, Ben Y., Cheriton, Olivia M., Storlazzi, Curt D., (2015). Vertical convergence of resuspended sediment and subducted phytoplankton to a persistent detached layer over the southern shelf of Monterey Bay, California. Journal of Geophysical Research: Oceans, 120: 3462-3483. http://dx.doi.org/10.1002/2015jc010785
Ševčíková, T., Horák, A., Klimeš , V., Zbránková, V., Demir-Hilton, E., Sudek, S., Jenkins, J., Schmutz, J., Přibyl , P., Fousek, J., Vlček , C., Lang, B. F., Oborník, M., Worden, A.Z., Eliáš, M., (2015). Updating algal evolutionary relationships through plastid genome sequencing: Did alveolate plastids emerge through endosymbiosis of an ochrophyte?. Scientific Reports, 5: . http://dx.doi.org/10.1038/srep10134
Siebert, S., Goetz, F.E., Church, S.H., Bhattacharyya, P., Zapata, F., Haddock, S.H.D., Dunn, C.W., (2015). Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones. Evodevo, 6: 22. http://dx.doi.org/10.1186/s13227-015-0018-2
Simmons, M.P., Bachy, C., Sudek, S., van Baren, M.J., Sudek, L., Ares, M., Jr., Worden, A.Z., (2015). Intron invasions trace algal speciation and reveal nearly identical Arctic and Antarctic Micromonas populations. Mol Biol Evol, 32: 2219-2235. http://dx.doi.org/10.1093/molbev/msv122
Smith, J.M., Damashek, J., Chavez, F.P., Francis, C.A., (2015). Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean. Limnology and Oceanography, 62: 596-609. http://dx.doi.org/10.1002/lno.10235
Smith Jr, K., Messié, Monique, Sherman, Alana, Huffard, Christine, Hobson, Brett, Ruhl, Henry, Boetius, Antje, (2015). Navigating the uncertain future of global oceanic time series. EOS, 96: . http://dx.doi.org/10.1029/2015eo038095
Thompson, D., Caress, D., Thomas, H., Conlin, D., (2015). MBARI mapping AUV operations in the Gulf of California 2015. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-7.
Thys, Tierney M., Ryan, John P., Dewar, Heidi, Perle, Christopher R., Lyons, Kady, O'Sullivan, John, Farwell, Charles, Howard, Michael J., Weng, Kevin C., Lavaniegos, Bertha E., Gaxiola-Castro, Gilberto, Miranda Bojorquez, Luis Erasmo, Hazen, Elliott L., Bograd, Steven J., (2015). Ecology of the ocean sunfish, Mola mola, in the southern California Current System. Journal of Experimental Marine Biology and Ecology, 471: 64-76. http://dx.doi.org/10.1016/j.jembe.2015.05.005
Trueblood, L.A., Zylinski, S., Seibel, B.A., Robison, B.H., (2015). An ethogram of the Humboldt squid Dosidicus gigas Orbigny (1835) as observed from remotely operated vehicles. Behaviour, 152: 1911-1932. http://dx.doi.org/10.1163/1568539x-00003324
Tubau, X., Paull, C.K., Lastras, G., Caress, D.W., Canals, M., Lundsten, E., Anderson, K., Gwiazda, R., Amblas, D., (2015). Submarine canyons of Santa Monica Bay, Southern California: Variability in morphology and sedimentary processes. Marine Geology, 365: 61-79. http://dx.doi.org/10.1016/j.margeo.2015.04.004
Varaljay, V.A., Robidart, J., Preston, C.M., Gifford, S.M., Durham, B.P., Burns, A.S., Ryan, J.P., Marin, R., 3rd, Kiene, R.P., Zehr, J.P., Scholin, C.A., Ann Moran, M., (2015). Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. ISME Journal, 9: 1692. http://dx.doi.org/10.1038/ismej.2015.94
Wasson, K., Suarez, B., Akhavan, A., McCarthy, E., Kildow, J., Johnson, K.S., Fountain, M.C., Woolfolk, A., Silberstein, M., Pendleton, L., Feliz, D., (2015). Lessons learned from an ecosystem-based management approach to restoration of a California estuary. Marine Policy, 58: 60-70. http://dx.doi.org/10.1016/j.marpol.2015.04.002
Wicksten, M., Kuhnz, L.A., (2015). A swimming deep-sea peneaoid shrimp photographed off California. California Fish and Game, 101: 146-148.
Worden, A.Z., Follows, M.J., Giovannoni, S.J., Wilken, S., Zimmerman, A.E., Keeling, P.J., (2015). Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes. Science, 347: . http://dx.doi.org/10.1126/science.1257594
Xu, Yi, Rose, Kenneth A., Chai, Fei, Chavez, Francisco P., Ayón, Patricia, (2015). Does spatial variation in environmental conditions affect recruitment? A study using a 3-D model of Peruvian anchovy. Progress in Oceanography, 138: 417-430. http://dx.doi.org/10.1016/j.pocean.2015.04.002
Yamahara, K.M., Demir-Hilton, E., Preston, C.M., Marin, R., 3rd, Pargett, D., Roman, B., Jensen, S., Birch, J.M., Boehm, A.B., Scholin, C.A., (2015). Simultaneous monitoring of faecal indicators and harmful algae using an in-situ autonomous sensor. Letters in Applied Microbiology, 61: 130-138. http://dx.doi.org/10.1111/lam.12432
Young, J.W., Hunt, B.P.V., Cook, T.R., Llopiz, J.K., Hazen, E.L., Pethybridge, H.R., Ceccarelli, D., Lorrain, A., Olson, R.J., Allain, V., Menkes, C., Patterson, T., Nicol, S., Lehodey, P., Kloser, R.J., Arrizabalaga, H., Choy, C.A., (2015). The trophodynamics of marine top predators: Current knowledge, recent advances and challenges. Deep Sea Research Part II: Topical Studies in Oceanography, 113: 170-187. http://dx.doi.org/10.1016/j.dsr2.2014.05.015
Zapata, F., Goetz, F.E., Smith, S.A., Howison, M., Siebert, S., Church, S.H., Sanders, S.M., Ames, C.L., McFadden, C.S., France, S.C., Daly, M., Collins, A.G., Haddock, S.H.D., Dunn, C.W., Cartwright, P., (2015). Phylogenomic analyses support traditional relationships within Cnidaria. PLoS One, 10: e0139068. http://dx.doi.org/10.1371/journal.pone.0139068
Zhang, H., Johnson, S.B., Flores, V.R., Vrijenhoek, R.C., (2015). Intergradation between discrete lineages of Tevnia jerichonana, a deep-sea hydrothermal vent tubeworm. Deep-Sea Research Part II: Topical Studies in Oceanography, 121: 53-61. http://dx.doi.org/10.1016/j.dsr2.2015.04.028
Zhang, Yanwu, Bellingham, James G., Ryan, John P., Godin, Michael A., (2015). Evolution of a physical and biological front from upwelling to relaxation. Continental Shelf Research, 108: 55-64. http://dx.doi.org/10.1016/j.csr.2015.08.005
Zhang, Y., Kieft, B., McEwen, R., Stanway, M.J., Bellingham, J. , Ryan, J., Hobson, B., Pargett, D., Birch, J., Scholin, C., (2015). Tracking and sampling of a phytoplankton patch by an autonomous underwater vehicle in drifting mode. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-5.