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Displaying 701-800 of 2,819 Publications


Peltzer, E.T., X. Zhang, P.M. Walz, M. Luna, and P.G. Brewer. 2016. In situ Raman measurement of HS and H2S in sediment pore waters and use of the HS:H2S ratio as an indicator of pore water pH. Marine Chemistry, 184: 32–42.

Plant, J.N., K.S. Johnson, C.M. Sakamoto, H.W. Jannasch, L.J. Coletti, S.C. Riser, and D.D. Swift. 2016. Net community production at Ocean Station Papa observed with nitrate and oxygen sensors on profiling floats. Global Biogeochemical Cycles, 30: 859–879.

Port, J. A., J.L. O'Donnell, O.C. Romero-Maraccini, P.R. Leary, S.Y. Litvin, K.J. Nickols, K.M. Yamahara, and R.P. Kelly. 2016. Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA. Molecular Ecology, 25: 527–541.

Puga-Bernabéu, Á., J.M. Webster, J.C. Braga, D.A. Clague, A. Dutton, S. Eggins, S. Fallon, G. Jacobsen, J.B. Paduan, and D.C. Potts. 2016. Morphology and evolution of drowned carbonate terraces during the last two interglacial cycles, off Hilo, NE Hawaii. Marine Geology, 371: 57–81.

Pugh, P.R., and S.H.D. Haddock. 2016. A description of two new species of the genus Erenna (Siphonophora, Physonectae, Erennidae), with notes on recently collected specimens of other Erenna species. Zootaxa, 4189: 401–446.

Raanan, B.Y., J.G. Bellingham, Y. Zhang, M. Kemp, B. Kieft, H. Singh, and Y. Girdhar. 2016. Automatic fault diagnosis for autonomous underwater vehicles using online topic models. OCEANS 2016 MTS/IEEE Monterey, 2016: 1–6.

Radenac, M.H., F. Léger, M. Messié, P. Dutrieux, C. Menkes, and G. Eldin. 2016. Wind-driven changes of surface current, temperature, and chlorophyll observed by satellites north of New Guinea. Journal of Geophysical Research: Oceans, 121: 2231–2252.

Reichert, A.N., L. Lundsten, and D.A. Ebert. 2016. First North Pacific records of the pointy nosed blue chimaera, Hydrolagus cf. trolli (Chondrichthyes: Chimaeriformes: Chimaeridae). Marine Biodiversity Records, 9: 90.

Reisenbichler, K.R., M.R. Chaffey, F. Cazenave, R.S. McEwen, R.G. Henthorn, R.E. Sherlock, and B.H. Robison. 2016. Automating MBARI's midwater time-series video surveys: The transition from ROV to AUV. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–9.

Ruhl, H.A., J.M. Durden, D. Jones, T. Schoening, T.W. Nattkemper, D. Cline, and D. Edgington. 2016. Computer vision and machine learning needs for research in biological oceanography. 2nd Workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI 2016), Cancun, 4 December 2016.

Ryan, J., D. Cline, C. Dawe, P. McGill, Y. Zhang, J. Joseph, T. Margolina, M. Caillat, M. Fischer, A. DeVogelaere, A. Stimpert, and B. Southall. 2016. New passive acoustic monitoring in Monterey Bay National Marine Sanctuary: Exploring natural and anthropogenic sounds in a deep soundscape. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Monterey, 19–23 September 2016.

Santoferrara, L.F., C. Bachy, V.A. Alder, J. Gong, Y.O. Kim, A. Saccá, I.D. da Silva Neto, M.C. Struder-Kypke, A. Warren, D. Xu, Z. Yi, and S. Agatha. 2016. Updating biodiversity studies in loricate protists: The case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea). Journal of Eukaryotic Microbiology, 63: 651–656.

Shafait, F., A. Mian, M. Shortis, B. Ghanem, P.F. Culverhouse, D. Edgington, D. Cline, M. Ravanbakskh, J. Seager, and E.S. Harvey. 2016. Fish identification from videos captured in uncontrolled underwater environments. ICES Journal of Marine Science, 73: 2737–2746.

Sherlock, R.E., K.R. Walz, and B.H. Robison. 2016. The first definitive record of the giant larvacean, Bathochordaeus charon, since its original description in 1900 and a range extension to the northeast Pacific Ocean. Marine Biodiversity Records, 9: 1–10.

Sickmann, Z., C.K. Paull, and S.A. Graham. 2016. Detrital-zircon mixing and partitioning in fluvial to deep marine systems, central California, U.S.A.. Journal of Sedimentary Research (SEPM), 86: 1298–1307.

Simmons, M.P., S. Sudek, A. Monier, A.J. Limardo, V. Jimenez, C.R. Perle, V.A. Elrod, J.T. Pennington, and A.Z. Worden. 2016. Abundance and biogeography of picoprasinophyte ecotypes and other phytoplankton in the Eastern North Pacific Ocean. Applied and Environmental Microbiology, 82: 1693–1705.

Smith Jr., K.L., C.L. Huffard, A.D. Sherman, and H.A. Ruhl. 2016. Decadal change in sediment community oxygen consumption in the abyssal northeast Pacific. Aquatic Geochemistry, 22: 401–417.

Stocks, K., N. Jacobsen Stout., and T.M. Shank. Information management strategies for deep‐sea biology. In Biological Sampling in the Deep Sea, edited by M.R. Clark, M. Consalvey, and A.A. Rowden, 368–385. Hoboken: Wiley-Blackwell, 2016.

Sunday, J.M., K.E. Fabricius, K.J. Kroeker, K.M. Anderson, N.E. Brown, J.P. Barry, S.D. Connell, S. Dupont, B. Gaylord, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2016. Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nature Climate Change, 7: 81–85.

Takeshita, Y., T.R. Martz, L.J. Coletti, A.G. Dickson, H.W. Jannasch, and K.S. Johnson. 2016. The effects of pressure on pH of Tris buffer in synthetic seawater. Marine Chemistry, 188: 1–5.

Thys, T., J.P. Ryan, K.C. Weng, M. Erdmann, and J. Tresnati. 2016. Tracking a marine ecotourism star: Movements of the short ocean sunfish Mola ramsayi in Nusa Penida, Bali, Indonesia. Journal of Marine Biology, 3: 1–6.

van Baren, M.J., C. Bachy, E.N. Reistetter, S.O. Purvine, J. Grimwood, S. Sudek, H. Yu, C. Poirier, T.J. Deerinck, A. Kuo, I.V. Grigoriev, C.H. Wong, R.D. Smith, S.J. Callister, C.L. Wei, J. Schmutz, and A.Z. Worden. 2016. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics, 17: 1–22.

Waldmann, C., T.M. Kier, W.S. Kirkwood, and S. Meckel. 2016. Performance data of a pneumatic variable buoyancy engine for a newly designed underwater glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–3.

Waltman, P. H., J. Guo, E.N. Reistetter, S. Purvine, C.K. Ansong, M.J. van Baren, C.H. Wong, C.L. Wei, R.D. Smith, S.J. Callister, J.M. Stuart, and A.Z. Worden. 2016. Identifying aspects of the post-transcriptional program governing the proteome of the green alga Micromonas pusilla. PLoS One, 11: e0155839.

Williams, N.L., L.W. Juranek, K.S. Johnson, R.A. Feely, S.C. Riser, L.D. Talley, J.L. Russell, J.L. Sarmiento, and R. Wanninkhof. 2016. Empirical algorithms to estimate water column pH in the Southern Ocean. Geophysical Research Letters, 43: 3415–3422.

Zhang, Y., B. Kieft, C. Rueda, T. O'Reilly, J. Ryan, T. Maughan, C. Wahl, and F. Chavez. 2016. Autonomous front tracking by a Wave Glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–4.

Zhang, Y., J.G. Bellingham, J.P. Ryan, B. Kieft, and M.J. Stanway. 2016. Autonomous four-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle. Journal of Field Robotics, 33: 67–81.

Ziccarelli, L., R. Dellor, R. Johnson, H. Schmitz, T. O'Reilly, and F. Chavez. 2016. A novel method of obtaining near real-time observations of phytoplankton from a mobile autonomous platform. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–5.


Aylward, F.O., J.M. Eppley, J.M. Smith, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2015. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences, 112: 5443–5448.

Baldwin Fergus, J.L., S. Johnsen, and K.J. Osborn. 2015. A unique apposition compound eye in the mesopelagic hyperiid amphipod Paraphronima gracilis. Current Biology, 25: 473–478.

Bradley, C.J., N.J. Wallsgrove, C.A. Choy, J.C. Drazen, E.D. Hetherington, D.K. Hoen, and B.N. Popp. 2015. Trophic position estimates of marine teleosts using amino acid compound specific isotopic analysis. Limnology and Oceanography: Methods, 13: 476–493.

Breusing, C., S.B. Johnson, V. Tunnicliffe, and R.C. Vrijenhoek. 2015. Population structure and connectivity in Indo-Pacific deep-sea mussels of the Bathymodiolus septemdierum complex. Conservation Genetics, 16: 1415–1430.

Brothers, D.S., J.E. Conrad, K.L. Maier, C.K. Paull, M. McGann, and D.W. Caress. 2015. The Palos Verdes Fault offshore Southern California: Late Pleistocene to present tectonic geomorphology, seascape evolution, and slip rate estimate based on AUV and ROV surveys. Journal of Geophysical Research: Solid Earth, 120: 4734–4758.

Caress, D.W., and D.N. Chayes. 2015. MB-System Version 5.5.2252. Open source software distributed from the MBARI and L-DEO web sites, 2000-2015.

Choy, C.A., B.N. Popp, C.C.S. Hannides, and J.C. Drazen. 2015. Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography, 60: 1156–1171.

Cline, D.E., and D.R. Edgington. 2015. A detection, tracking, and classification system for underwater images. . Visual observation and analysis of animal and insect behavior (VAIB), 20th International Conference on Pattern Recognition (ICPR 2010), Istanbul, 22 August 2010.

Coumans, J.P., Stix, J., Clague, D.A., and W.G. Minarik. 2015. The magmatic architecture of Taney Seamount-A, NE Pacific Ocean. Journal of Petrology, 56: 1037–1067.

Dallimore, S.R., C.K. Paull, M. Riedel, Y.K. Jin, A.E. Taylor, H. Melling, A. Kopf, H. Villinger, and M.M. Côté. 2015. Geohazard investigations of permafrost and permafrost gas hydrates in the outer shelf and upper slope of the Beaufort Sea. Canadian Permafrost Conference, Canadian Geotechnical Conference, Quebec, 20–23 September 2015.

Das, J., F. Py, J.B.J. Harvey, J. Ryan, A. Gellene, R. Graham, D.A. Caron, K. Rajan, and G.S. Sukhatme. 2015. Data-driven robotic sampling for marine ecosystem monitoring. The International Journal of Robotics Research, 34: 1435–1452.

Derelle, E., A. Monier, R. Cooke, A.Z. Worden, N.H. Grimsley, and H. Moreau. 2015. Diversity of viruses infecting the green microalga Ostreococcus lucimarinus. Journal of Virology, 89: 5812–5821.

Dunlop, K.M., L.A. Kuhnz, H.A. Ruhl, C.L. Huffard, D.W. Caress, R.G. Henthorn, B.W. Hobson, P. McGill, and K.L. Smith Jr. 2015. An evaluation of deep-sea benthic megafauna length measurements obtained with laser and stereo camera methods. Deep Sea Research I, 96: 38–48.

Francis, W.R., N.C. Shaner, L.M. Christianson, M.L. Powers, and S.H.D. Haddock. 2015. Occurrence of isopenicillin-N-synthase homologs in bioluminescent ctenophores and implications for coelenterazine biosynthesis. PLoS One, 10: e0128742. PDF.

Gasca, R., E. Suárez-Morales, and S.H.D. Haddock. 2015. Sapphirina iris Dana, 1849 and S. sinuicauda Brady, 1883 (Copepoda, Cyclopoida): Predators of salps in Monterey Bay and the Gulf of California. Crustaceana, 88: 689–699.

Gaylord, B., K.J. Kroeker, J.M. Sunday, K.M. Anderson, J.P. Barry, N.E. Brown, S.D. Connell, S. Dupont, K.E. Fabricius, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, S.J. Schreiber, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2015. Ocean acidification through the lens of ecological theory. Ecology, 96: 3–15.

Gehlen, M., R. Séférian, D.O.B. Jones, T. Roy, R. Roth, J. Barry, L. Bopp, S.C. Doney, J.P. Dunne, C. Heinze, F. Joos, J.C. Orr, L. Resplandy, J. Segschneider, and J. Tjiputra. 2015. Projected pH reductions by 2100 might put deep North Atlantic biodiversity at risk. Biogeosciences, 11: 6955–6967.

Gwiazda, R., C.K. Paull, W. Ussler, and C.R. Alexander. 2015. Evidence of modern fine-grained sediment accumulation in the Monterey Fan from measurements of the pesticide DDT and its metabolites. Marine Geology, 363: 125–133.

Haddock, S.H.D., and C.W. Dunn. 2015. Fluorescent proteins function as a prey attractant: Experimental evidence from the hydromedusa Olindias formosus and other marine organisms. Biology Open, 4(9): 1094–1104. Supplemental video.

Helz, R.T., D.A. Clague, L.G. Mastin, and T.R. Rose. 2015. Evidence for large compositional ranges in coeval melts erupted from Kilauea’s summit reservoir. Hawaiian Volcanoes: From Source to Surface, 208: 125–145.

Hughes, B.B., M.D. Levey, M.C. Fountain, A.B. Carlisle, F.P. Chavez, and M.G. Gleason. 2015. Climate mediates hypoxic stress on fish diversity and nursery function at the land-sea interface. Proceedings of the National Academy of Sciences, 112: 8025–8030.

Johnson, K.S., J.N. Plant, S.C. Riser, and D. Gilbert. 2015. Air oxygen calibration of oxygen optodes on a profiling float array. Journal of Atmospheric and Oceanic Technology, 32: 2160–2172.

Katija, K. 2015. Morphology alters fluid transport and the ability of organisms to mix oceanic waters. Integrative and Comparative Biology, 55: 698–705.

Katija, K., S.P. Colin, J.H. Costello, and H. Jiang. 2015. Ontogenetic propulsive transitions by medusae Sarsia tubulosa . Journal of Experimental Biology, 218: 2333–2343.

Kim, T.W., J. Taylor, C. Lovera, and J.P. Barry. 2015. CO2-driven decrease in pH disrupts olfactory behaviour and increases individual variation in deep-sea hermit crabs. ICES Journal of Marine Science, 73(3): 613–619.

Kirkwood, W.J. 2015. FOCE: The evolution of in situ Free Ocean CO2 Enrichment experiments.. Proceedings of the Institute of Electrical and Electronics Engineers International Underwater Technology, Chennai, 23–25 February 2015: 1–10.

Kirkwood, W.J., P.M. Walz, E.T. Peltzer, J.P. Barry, R.A. Herlien, K.L. Headley, C. Kecy, G.I. Matsumoto, T. Maughan, T.C. O’Reilly, K.A. Salamy, F. Shane, and P.G. Brewer. 2015. Design, construction, and operation of an actively controlled deep-sea CO2 enrichment experiment using a cabled observatory system. Deep Sea Research Part I: Oceanographic Research Papers, 97: 1–9.

Kuhnz, L.A., K. Buck, C. Lovera, P.J. Whaling, and J.P. Barry. Potential impacts of the Monterey Accelerated Research System (MARS) Cable on the seabed and benthic faunal assemblages. Moss Landing: Monterey Bay Aquarium Research Institute, 2015.

Laguionie-Marchais, C., L.A. Kuhnz, C.L. Huffard, H.A. Ruhl, and K.L. Smith, Jr. 2015. Spatial and temporal variation in sponge spicule patches at Station M, northeast Pacific. Marine Biology, 162: 617–624.

Lecher, A.L., K. Mackey, R. Kudela, J. Ryan, A. Fisher, J. Murray, and A. Paytan. 2015. Nutrient loading through submarine groundwater discharge and phytoplankton growth in Monterey Bay, CA. Environmental Science & Technology, 49: 6665–6673.

Liu, H., S. Cai, H. Zhang, and R.C. Vrijenhoek. 2015. Complete mitochondrial genome of hydrothermal vent clam Calyptogena magnifica. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, 27(6): 4333–4335.

Mah, C., K. Linse, J. Copley, L. Marsh, A. Rogers, D. Clague, and D. Foltz. 2015. Description of a new family, new genus, and two new species of deep-sea Forcipulatacea (Asteroidea), including the first known sea star from hydrothermal vent habitats. Zoological Journal of the Linnean Society, 174: 93–113.

Miljutin, D., M. Miljutina, and M. Messié. 2015. Changes in abundance and community structure of nematodes from the abyssal polymetallic nodule field, Tropical Northeast Pacific. Deep Sea Research Part I: Oceanographic Research Papers, 106: 126–135.

Mooney, T.A., K. Katija, K.A. Shorter, T. Hurst, J. Fontes, and P. Afonso. 2015. ITAG: an eco-sensor for fine-scale behavioral measurements of soft-bodied marine invertebrates. Animal Biotelemetry, 3: 1–14.

O'Reilly, T., B. Kieft, and M. Chaffey. 2015. Communications relay and autonomous tracking applications for Wave Glider. OCEANS 2015, Genova, 2015: 1–6.

Orsi, W.D., J.M. Smith, H.M. Wilcox, J.E. Swalwell, P. Carini, A.Z. Worden, and A.E. Santoro. 2015. Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. ISME Journal, 9: 1747–1763.

Pargett, D.M., J.M. Birch, C.M. Preston, J.P. Ryan, Y. Zhang, and C.A. Scholin. 2015. Development of a mobile ecogenomic sensor. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2015: 1–6.

Paull, C.K., D.W. Caress, H. Thomas, E. Lundsten, K. Anderson, R. Gwiazda, M. Riedel, M. McGann, and J.C. Herguera. 2015. Seafloor geomorphic manifestations of gas venting and shallow subbottom gas hydrate occurrences. Geosphere, 11: 491–513.

Paull, C.K., S.R. Dallimore, D.W. Caress, R. Gwiazda, H. Melling, M. Riedel, Y.K. Jin, J.K. Hong, Y.G. Kim, D. Graves, A. Sherman, E. Lundsten, K. Anderson, L. Lundsten, H. Villinger, A. Kopf, S.B. Johnson, J. Hughes Clarke, S. Blasco, K. Conway, P. Neelands, H. Thomas, and M. Côté. 2015. Active mud volcanoes on the continental slope of the Canadian Beaufort Sea. Geochemistry, Geophysics, Geosystems, 16: 3160–3181.

Pearse, J.S., W.T. Doyle, V.B. Pearce, M.M. Gowing, J.T. Pennington, E. Danner, and A. Wasser. Long-term monitoring of surfgrass meadows in the Monterey Bay National Marine Sanctuary: Recovery followed by stability after the termination of a domestic sewage discharge. Maryland: Marine Sanctuaries Conservation Series ONMS-15-10, December 2015.

Pennington, J.T., M. Blum, and F.P. Chavez. 2015. Seawater sampling by an autonomous underwater vehicle: “Gulper” sample validation for nitrate, chlorophyll, phytoplankton, and primary production. Limnology and Oceanography: Methods, 14: 14–23.

Plesch, Andreas, and M. McCann. 2015. The X3D geospatial component: X3DOM implementation of GeoOrigin, GeoLocation, GeoViewpoint, and GeoPositionInterpolator nodes.. Proceedings of the 20th International Conference on 3D Web Technology, Web3D '15: 31–37.

Pomponi, S.A., D.W. Titley, E. Boyle, M. Briscoe, R.E. Davis, M. Edwards, M.H. Feeley, D. Forsyth, P. Liss, S. Lozier, R. Marinelli, J.J. McCarthy, A. Mix, S.A. Murawski, R.T. Paine, C. Paull, D. Walsh, B.B. Ward, J.A. Yoder, and W.R. Young. Sea Change: 2015-2025 Decadal Survey of Ocean Sciences. Washington, DC: The National Academies Press, 2015.

Portner, R.A., D.A. Clague, C. Helo, B.M. Dreyer, and J.B. Paduan. 2015. Contrasting styles of deep-marine pyroclastic eruptions revealed from Axial Seamount push core records. Earth and Planetary Science Letters, 423: 219–231.

Raanan, B.Y., J. Bellingham, Y. Zhang, B. Kieft, M.J. Stanway, R. McEwan, and B. Hobson. 2015. A real-time vertical plane flight anomaly detection system for a long range autonomous underwater vehicle. Proceedings of the Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans Conference, 2015: 1–6.

Raskoff, K.A., and G.I. Matsumoto. 2015. Caveat lector: The perils of critical thinking for today’s students. California Classroom Science, 27(6): 1–4.'s_Students

Ribalet, F., J. Swalwell, S. Clayton, V. Jimenez, S. Sudek, Y. Lin, Z. Johnson, A.Z. Worden, and E.V. Armbrust. 2015. Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. Proceedings of the National Academy of Sciences of the United States of America, 112: 8008–8012.

Rouse, G.W., N.G. Wilson, J.I. Carvajal, and R.C. Vrijenhoek. 2015. New deep-sea species of Xenoturbella and the position of Xenacoelomorpha. Nature, 530: 94–97.

Sackett, D.K., J.C. Drazen, C.A. Choy, B. Popp, and G.L. Pitz. 2015. Mercury sources and trophic ecology for Hawaiian bottomfish. Environmental Science & Technology, 49: 6909–6918.

Sanamyan, N.P., K.E. Sanamyan, and L. Lundsten. 2015. Two new deepwater sea anemones (Cnidaria: Anthozoa: Actiniaria) Sicyonis heliodiscus sp.n. (Actinostolidae) and Hormathia pacifica sp.n. (Hormathiidae) from Pacific. Invertebrate Zoology, 12: 131–149.

Sassoubre, L.M., K.M. Yamahara, and A.B. Boehm. 2015. Temporal stability of the microbial community in sewage-polluted seawater exposed to natural sunlight cycles and marine microbiota. Applied and Environmental Microbiology, 81: 2107–2116.

Seegers, B.N., J.M. Birch, R. Marin, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Robertson, and B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography, 60: 754–764.

Sevadjian, J.C., E.E. McPhee-Shaw, B.Y. Raanan, O.M. Cheriton, and C.D. Storlazzi. 2015. Vertical convergence of resuspended sediment and subducted phytoplankton to a persistent detached layer over the southern shelf of Monterey Bay, California. Journal of Geophysical Research: Oceans, 120: 3462–3483.

Ševčíková, T., A. Horák, V. Klimeš, V. Zbránková, E. Demir-Hilton, S. Sudek, J. Jenkins, J. Schmutz, P. Přibyl, J. Fousek, C. Vlček, B.F. Lang, M. Oborník, A.Z. Worden, and M. Eliáš. 2015. Updating algal evolutionary relationships through plastid genome sequencing: Did alveolate plastids emerge through endosymbiosis of an ochrophyte?. Scientific Reports, 5: 1–12.

Siebert, S., F.E. Goetz, S.H. Church, P. Bhattacharyya, F. Zapata, S.H.D. Haddock, and C.W. Dunn. 2015. Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones. Evodevo, 6: 22.

Simmons, M.P., C. Bachy, S. Sudek, M.J. van Baren, L. Sudek, M. Ares, Jr., and A.Z. Worden. 2015. Intron invasions trace algal speciation and reveal nearly identical Arctic and Antarctic Micromonas populations. Molecular Biology and Evolution, 32(9): 2219–2235.

Smith Jr, K., M. Messié, A. Sherman, C. Huffard, B. Hobson, H. Ruhl, and A. Boetius. 2015. "Navigating the uncertain future of global oceanic time series." EOS, 96: 28 October 2015.

Smith, J.M., J. Damashek, F.P. Chavez, and C.A. Francis. 2015. Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean. Limnology and Oceanography, 62: 596–609.

Stanway, M.J., B. Kieft, T. Hoover, B. Hobson, D. Klimov, J. Erickson, B.Y. Raanan, D.A. Ebert, and J. Bellingham. 2015. White shark strike on a long-range AUV in Monterey Bay. In OCEANS 2015-Genova, Genova, Italy, May 2015, 1–7. IEEE.

Thompson, D., D. Caress, H. Thomas, and D. Conlin. 2015. MBARI mapping AUV operations in the Gulf of California 2015. In Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Washington, D.C., 2016: 1–7.