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2016

Ryan, J., D. Cline, C. Dawe, P. McGill, Y. Zhang, J. Joseph, T. Margolina, M. Caillat, M. Fischer, A. DeVogelaere, A. Stimpert, and B. Southall. 2016. New passive acoustic monitoring in Monterey Bay National Marine Sanctuary: Exploring natural and anthropogenic sounds in a deep soundscape. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Monterey, 19–23 September 2016.

Santoferrara, L.F., C. Bachy, V.A. Alder, J. Gong, Y.O. Kim, A. Saccá, I.D. da Silva Neto, M.C. Struder-Kypke, A. Warren, D. Xu, Z. Yi, and S. Agatha. 2016. Updating biodiversity studies in loricate protists: The case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea). Journal of Eukaryotic Microbiology, 63: 651–656. http://dx.doi.org/10.1111/jeu.12303

Shafait, F., A. Mian, M. Shortis, B. Ghanem, P.F. Culverhouse, D. Edgington, D. Cline, M. Ravanbakskh, J. Seager, and E.S. Harvey. 2016. Fish identification from videos captured in uncontrolled underwater environments. ICES Journal of Marine Science, 73: 2737–2746. http://dx.doi.org/10.1093/icesjms/fsw106

Sherlock, R.E., K.R. Walz, and B.H. Robison. 2016. The first definitive record of the giant larvacean, Bathochordaeus charon, since its original description in 1900 and a range extension to the northeast Pacific Ocean. Marine Biodiversity Records, 9: 1–10. http://dx.doi.org/10.1186/s41200-016-0075-9

Sickmann, Z., C.K. Paull, and S.A. Graham. 2016. Detrital-zircon mixing and partitioning in fluvial to deep marine systems, central California, U.S.A.. Journal of Sedimentary Research (SEPM), 86: 1298–1307. http://dx.doi.org/10.2110/jsr.2016.78

Simmons, M.P., S. Sudek, A. Monier, A.J. Limardo, V. Jimenez, C.R. Perle, V.A. Elrod, J.T. Pennington, and A.Z. Worden. 2016. Abundance and biogeography of picoprasinophyte ecotypes and other phytoplankton in the Eastern North Pacific Ocean. Applied and Environmental Microbiology, 82: 1693–1705. http://dx.doi.org/10.1128/AEM.02730-15

Smith Jr., K.L., C.L. Huffard, A.D. Sherman, and H.A. Ruhl. 2016. Decadal change in sediment community oxygen consumption in the abyssal northeast Pacific. Aquatic Geochemistry, 22: 401–417. http://dx.doi.org/10.1007/s10498-016-9293-3

Stocks, K., N. Jacobsen Stout., and T.M. Shank. Information management strategies for deep‐sea biology. In Biological Sampling in the Deep Sea, edited by M.R. Clark, M. Consalvey, and A.A. Rowden, 368–385. Hoboken: Wiley-Blackwell, 2016.

Sunday, J.M., K.E. Fabricius, K.J. Kroeker, K.M. Anderson, N.E. Brown, J.P. Barry, S.D. Connell, S. Dupont, B. Gaylord, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2016. Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nature Climate Change, 7: 81–85. http://dx.doi.org/10.1038/nclimate3161

Takeshita, Y., T.R. Martz, L.J. Coletti, A.G. Dickson, H.W. Jannasch, and K.S. Johnson. 2016. The effects of pressure on pH of Tris buffer in synthetic seawater. Marine Chemistry, 188: 1–5. http://dx.doi.org/10.1016/j.marchem.2016.11.002

Thys, T., J.P. Ryan, K.C. Weng, M. Erdmann, and J. Tresnati. 2016. Tracking a marine ecotourism star: Movements of the short ocean sunfish Mola ramsayi in Nusa Penida, Bali, Indonesia. Journal of Marine Biology, 3: 1–6. http://dx.doi.org/10.1155/2016/8750193

van Baren, M.J., C. Bachy, E.N. Reistetter, S.O. Purvine, J. Grimwood, S. Sudek, H. Yu, C. Poirier, T.J. Deerinck, A. Kuo, I.V. Grigoriev, C.H. Wong, R.D. Smith, S.J. Callister, C.L. Wei, J. Schmutz, and A.Z. Worden. 2016. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics, 17: 1–22. http://dx.doi.org/10.1186/s12864-016-2585-6

Waldmann, C., T.M. Kier, W.S. Kirkwood, and S. Meckel. 2016. Performance data of a pneumatic variable buoyancy engine for a newly designed underwater glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–3. http://dx.doi.org/10.1109/OCEANS.2016.7761225

Waltman, P. H., J. Guo, E.N. Reistetter, S. Purvine, C.K. Ansong, M.J. van Baren, C.H. Wong, C.L. Wei, R.D. Smith, S.J. Callister, J.M. Stuart, and A.Z. Worden. 2016. Identifying aspects of the post-transcriptional program governing the proteome of the green alga Micromonas pusilla. PLoS One, 11: e0155839. http://dx.doi.org/10.1371/journal.pone.0155839

Williams, N.L., L.W. Juranek, K.S. Johnson, R.A. Feely, S.C. Riser, L.D. Talley, J.L. Russell, J.L. Sarmiento, and R. Wanninkhof. 2016. Empirical algorithms to estimate water column pH in the Southern Ocean. Geophysical Research Letters, 43: 3415–3422. http://dx.doi.org/10.1002/2016GL068539

Zhang, Y., B. Kieft, C. Rueda, T. O'Reilly, J. Ryan, T. Maughan, C. Wahl, and F. Chavez. 2016. Autonomous front tracking by a Wave Glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–4. http://dx.doi.org/10.1109/OCEANS.2016.7761070

Zhang, Y., J.G. Bellingham, J.P. Ryan, B. Kieft, and M.J. Stanway. 2016. Autonomous four-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle. Journal of Field Robotics, 33: 67–81. http://dx.doi.org/10.1002/rob.21617

Ziccarelli, L., R. Dellor, R. Johnson, H. Schmitz, T. O'Reilly, and F. Chavez. 2016. A novel method of obtaining near real-time observations of phytoplankton from a mobile autonomous platform. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–5. http://dx.doi.org/10.1109/OCEANS.2016.7761230

2015

Aylward, F.O., J.M. Eppley, J.M. Smith, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2015. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences, 112: 5443–5448. http://dx.doi.org/10.1073/pnas.1502883112

Baldwin Fergus, J.L., S. Johnsen, and K.J. Osborn. 2015. A unique apposition compound eye in the mesopelagic hyperiid amphipod Paraphronima gracilis. Current Biology, 25: 473–478. http://dx.doi.org/10.1016/j.cub.2014.12.010

Bradley, C.J., N.J. Wallsgrove, C.A. Choy, J.C. Drazen, E.D. Hetherington, D.K. Hoen, and B.N. Popp. 2015. Trophic position estimates of marine teleosts using amino acid compound specific isotopic analysis. Limnology and Oceanography: Methods, 13: 476–493. http://dx.doi.org/10.1002/lom3.10041

Breusing, C., S.B. Johnson, V. Tunnicliffe, and R.C. Vrijenhoek. 2015. Population structure and connectivity in Indo-Pacific deep-sea mussels of the Bathymodiolus septemdierum complex. Conservation Genetics, 16: 1415–1430. https://doi.org/10.1007/s10592-015-0750-0

Brothers, D.S., J.E. Conrad, K.L. Maier, C.K. Paull, M. McGann, and D.W. Caress. 2015. The Palos Verdes Fault offshore Southern California: Late Pleistocene to present tectonic geomorphology, seascape evolution, and slip rate estimate based on AUV and ROV surveys. Journal of Geophysical Research: Solid Earth, 120: 4734–4758. http://dx.doi.org/10.1002/2015jb011938

Caress, D.W., and D.N. Chayes. 2015. MB-System Version 5.5.2252. Open source software distributed from the MBARI and L-DEO web sites, 2000-2015. https://www.mbari.org/products/research-software/mb-system/

Choy, C.A., B.N. Popp, C.C.S. Hannides, and J.C. Drazen. 2015. Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography, 60: 1156–1171. http://dx.doi.org/10.1002/lno.10085

Cline, D.E., and D.R. Edgington. 2015. A detection, tracking, and classification system for underwater images. . Visual observation and analysis of animal and insect behavior (VAIB), 20th International Conference on Pattern Recognition (ICPR 2010), Istanbul, 22 August 2010.

Coumans, J.P., Stix, J., Clague, D.A., and W.G. Minarik. 2015. The magmatic architecture of Taney Seamount-A, NE Pacific Ocean. Journal of Petrology, 56: 1037–1067. http://dx.doi.org/10.1093/petrology/egv027

Dallimore, S.R., C.K. Paull, M. Riedel, Y.K. Jin, A.E. Taylor, H. Melling, A. Kopf, H. Villinger, and M.M. Côté. 2015. Geohazard investigations of permafrost and permafrost gas hydrates in the outer shelf and upper slope of the Beaufort Sea. Canadian Permafrost Conference, Canadian Geotechnical Conference, Quebec, 20–23 September 2015.

Das, J., F. Py, J.B.J. Harvey, J. Ryan, A. Gellene, R. Graham, D.A. Caron, K. Rajan, and G.S. Sukhatme. 2015. Data-driven robotic sampling for marine ecosystem monitoring. The International Journal of Robotics Research, 34: 1435–1452. http://dx.doi.org/10.1177/0278364915587723

Derelle, E., A. Monier, R. Cooke, A.Z. Worden, N.H. Grimsley, and H. Moreau. 2015. Diversity of viruses infecting the green microalga Ostreococcus lucimarinus. Journal of Virology, 89: 5812–5821. http://dx.doi.org/10.1128/JVI.00246-15

Dunlop, K.M., L.A. Kuhnz, H.A. Ruhl, C.L. Huffard, D.W. Caress, R.G. Henthorn, B.W. Hobson, P. McGill, and K.L. Smith Jr. 2015. An evaluation of deep-sea benthic megafauna length measurements obtained with laser and stereo camera methods. Deep Sea Research I, 96: 38–48. http://dx.doi.org/10.1016/j.dsr.2014.11.003

Francis, W.R., N.C. Shaner, L.M. Christianson, M.L. Powers, and S.H.D. Haddock. 2015. Occurrence of isopenicillin-N-synthase homologs in bioluminescent ctenophores and implications for coelenterazine biosynthesis. PLoS One, 10: e0128742. http://dx.doi.org/10.1371/journal.pone.0128742. PDF.

Gasca, R., E. Suárez-Morales, and S.H.D. Haddock. 2015. Sapphirina iris Dana, 1849 and S. sinuicauda Brady, 1883 (Copepoda, Cyclopoida): Predators of salps in Monterey Bay and the Gulf of California. Crustaceana, 88: 689–699. http://dx.doi.org/10.1163/15685403-00003438

Gaylord, B., K.J. Kroeker, J.M. Sunday, K.M. Anderson, J.P. Barry, N.E. Brown, S.D. Connell, S. Dupont, K.E. Fabricius, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, S.J. Schreiber, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2015. Ocean acidification through the lens of ecological theory. Ecology, 96: 3–15. http://dx.doi.org/10.1890/14-0802.1

Gehlen, M., R. Séférian, D.O.B. Jones, T. Roy, R. Roth, J. Barry, L. Bopp, S.C. Doney, J.P. Dunne, C. Heinze, F. Joos, J.C. Orr, L. Resplandy, J. Segschneider, and J. Tjiputra. 2015. Projected pH reductions by 2100 might put deep North Atlantic biodiversity at risk. Biogeosciences, 11: 6955–6967. http://dx.doi.org/10.5194/bg-11-6955-2014

Gwiazda, R., C.K. Paull, W. Ussler, and C.R. Alexander. 2015. Evidence of modern fine-grained sediment accumulation in the Monterey Fan from measurements of the pesticide DDT and its metabolites. Marine Geology, 363: 125–133. http://dx.doi.org/10.1016/j.margeo.2015.02.006

Haddock, S.H.D., and C.W. Dunn. 2015. Fluorescent proteins function as a prey attractant: Experimental evidence from the hydromedusa Olindias formosus and other marine organisms. Biology Open, 4(9): 1094–1104. http://dx.doi.org/10.1242/bio.012138. Supplemental video.

Helz, R.T., D.A. Clague, L.G. Mastin, and T.R. Rose. 2015. Evidence for large compositional ranges in coeval melts erupted from Kilauea’s summit reservoir. Hawaiian Volcanoes: From Source to Surface, 208: 125–145. https://doi.org/10.1002/9781118872079.ch7

Hughes, B.B., M.D. Levey, M.C. Fountain, A.B. Carlisle, F.P. Chavez, and M.G. Gleason. 2015. Climate mediates hypoxic stress on fish diversity and nursery function at the land-sea interface. Proceedings of the National Academy of Sciences, 112: 8025–8030. http://dx.doi.org/10.1073/pnas.1505815112

Johnson, K.S., J.N. Plant, S.C. Riser, and D. Gilbert. 2015. Air oxygen calibration of oxygen optodes on a profiling float array. Journal of Atmospheric and Oceanic Technology, 32: 2160–2172. http://dx.doi.org/10.1175/jtech-d-15-0101.1

Katija, K. 2015. Morphology alters fluid transport and the ability of organisms to mix oceanic waters. Integrative and Comparative Biology, 55: 698–705. http://dx.doi.org/10.1093/icb/icv075

Katija, K., S.P. Colin, J.H. Costello, and H. Jiang. 2015. Ontogenetic propulsive transitions by medusae Sarsia tubulosa . Journal of Experimental Biology, 218: 2333–2343. http://dx.doi.org/10.1242/jeb.115832

Kim, T.W., J. Taylor, C. Lovera, and J.P. Barry. 2015. CO2-driven decrease in pH disrupts olfactory behaviour and increases individual variation in deep-sea hermit crabs. ICES Journal of Marine Science, 73(3): 613–619. http://dx.doi.org/10.1093/icesjms/fsv019

Kirkwood, W.J. 2015. FOCE: The evolution of in situ Free Ocean CO2 Enrichment experiments.. Proceedings of the Institute of Electrical and Electronics Engineers International Underwater Technology, Chennai, 23–25 February 2015: 1–10. http://dx.doi.org/10.1109/UT.2015.7108322

Kirkwood, W.J., P.M. Walz, E.T. Peltzer, J.P. Barry, R.A. Herlien, K.L. Headley, C. Kecy, G.I. Matsumoto, T. Maughan, T.C. O’Reilly, K.A. Salamy, F. Shane, and P.G. Brewer. 2015. Design, construction, and operation of an actively controlled deep-sea CO2 enrichment experiment using a cabled observatory system. Deep Sea Research Part I: Oceanographic Research Papers, 97: 1–9. http://dx.doi.org/10.1016/j.dsr.2014.11.005

Kuhnz, L.A., K. Buck, C. Lovera, P.J. Whaling, and J.P. Barry. Potential impacts of the Monterey Accelerated Research System (MARS) Cable on the seabed and benthic faunal assemblages. Moss Landing: Monterey Bay Aquarium Research Institute, 2015. https://tethys.pnnl.gov/publications/potential-impacts-monterey-accelerated-research-system-mars-cable-seabed-benthic

Laguionie-Marchais, C., L.A. Kuhnz, C.L. Huffard, H.A. Ruhl, and K.L. Smith, Jr. 2015. Spatial and temporal variation in sponge spicule patches at Station M, northeast Pacific. Marine Biology, 162: 617–624. http://dx.doi.org/10.1007/s00227-014-2609-1

Lecher, A.L., K. Mackey, R. Kudela, J. Ryan, A. Fisher, J. Murray, and A. Paytan. 2015. Nutrient loading through submarine groundwater discharge and phytoplankton growth in Monterey Bay, CA. Environmental Science & Technology, 49: 6665–6673. http://dx.doi.org/10.1021/acs.est.5b00909

Liu, H., S. Cai, H. Zhang, and R.C. Vrijenhoek. 2015. Complete mitochondrial genome of hydrothermal vent clam Calyptogena magnifica. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, 27(6): 4333–4335. http://dx.doi.org/10.3109/19401736.2015.1089488

Mah, C., K. Linse, J. Copley, L. Marsh, A. Rogers, D. Clague, and D. Foltz. 2015. Description of a new family, new genus, and two new species of deep-sea Forcipulatacea (Asteroidea), including the first known sea star from hydrothermal vent habitats. Zoological Journal of the Linnean Society, 174: 93–113. http://dx.doi.org/10.1111/zoj.12229

Miljutin, D., M. Miljutina, and M. Messié. 2015. Changes in abundance and community structure of nematodes from the abyssal polymetallic nodule field, Tropical Northeast Pacific. Deep Sea Research Part I: Oceanographic Research Papers, 106: 126–135. http://dx.doi.org/10.1016/j.dsr.2015.10.009

Mooney, T.A., K. Katija, K.A. Shorter, T. Hurst, J. Fontes, and P. Afonso. 2015. ITAG: an eco-sensor for fine-scale behavioral measurements of soft-bodied marine invertebrates. Animal Biotelemetry, 3: 1–14. http://dx.doi.org/10.1186/s40317-015-0076-1

O'Reilly, T., B. Kieft, and M. Chaffey. 2015. Communications relay and autonomous tracking applications for Wave Glider. OCEANS 2015, Genova, 2015: 1–6.

Orsi, W.D., J.M. Smith, H.M. Wilcox, J.E. Swalwell, P. Carini, A.Z. Worden, and A.E. Santoro. 2015. Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. ISME Journal, 9: 1747–1763. http://dx.doi.org/10.1038/ismej.2014.260

Pargett, D.M., J.M. Birch, C.M. Preston, J.P. Ryan, Y. Zhang, and C.A. Scholin. 2015. Development of a mobile ecogenomic sensor. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2015: 1–6.

Paull, C.K., D.W. Caress, H. Thomas, E. Lundsten, K. Anderson, R. Gwiazda, M. Riedel, M. McGann, and J.C. Herguera. 2015. Seafloor geomorphic manifestations of gas venting and shallow subbottom gas hydrate occurrences. Geosphere, 11: 491–513. http://dx.doi.org/10.1130/ges01012.1

Paull, C.K., S.R. Dallimore, D.W. Caress, R. Gwiazda, H. Melling, M. Riedel, Y.K. Jin, J.K. Hong, Y.G. Kim, D. Graves, A. Sherman, E. Lundsten, K. Anderson, L. Lundsten, H. Villinger, A. Kopf, S.B. Johnson, J. Hughes Clarke, S. Blasco, K. Conway, P. Neelands, H. Thomas, and M. Côté. 2015. Active mud volcanoes on the continental slope of the Canadian Beaufort Sea. Geochemistry, Geophysics, Geosystems, 16: 3160–3181. http://dx.doi.org/10.1002/2015GC005928

Pearse, J.S., W.T. Doyle, V.B. Pearce, M.M. Gowing, J.T. Pennington, E. Danner, and A. Wasser. Long-term monitoring of surfgrass meadows in the Monterey Bay National Marine Sanctuary: Recovery followed by stability after the termination of a domestic sewage discharge. Maryland: Marine Sanctuaries Conservation Series ONMS-15-10, December 2015. https://sanctuaries.noaa.gov/science/conservation/monterey-bay-surfgrass.html

Pennington, J.T., M. Blum, and F.P. Chavez. 2015. Seawater sampling by an autonomous underwater vehicle: “Gulper” sample validation for nitrate, chlorophyll, phytoplankton, and primary production. Limnology and Oceanography: Methods, 14: 14–23. http://dx.doi.org/10.1002/lom3.10065

Plesch, Andreas, and M. McCann. 2015. The X3D geospatial component: X3DOM implementation of GeoOrigin, GeoLocation, GeoViewpoint, and GeoPositionInterpolator nodes.. Proceedings of the 20th International Conference on 3D Web Technology, Web3D '15: 31–37. http://dx.doi.org/10.1145/2775292.2775315

Pomponi, S.A., D.W. Titley, E. Boyle, M. Briscoe, R.E. Davis, M. Edwards, M.H. Feeley, D. Forsyth, P. Liss, S. Lozier, R. Marinelli, J.J. McCarthy, A. Mix, S.A. Murawski, R.T. Paine, C. Paull, D. Walsh, B.B. Ward, J.A. Yoder, and W.R. Young. Sea Change: 2015-2025 Decadal Survey of Ocean Sciences. Washington, DC: The National Academies Press, 2015. http://dx.doi.org/10.17226/21655

Portner, R.A., D.A. Clague, C. Helo, B.M. Dreyer, and J.B. Paduan. 2015. Contrasting styles of deep-marine pyroclastic eruptions revealed from Axial Seamount push core records. Earth and Planetary Science Letters, 423: 219–231. http://dx.doi.org/10.1016/j.epsl.2015.03.043

Raanan, B.Y., J. Bellingham, Y. Zhang, B. Kieft, M.J. Stanway, R. McEwan, and B. Hobson. 2015. A real-time vertical plane flight anomaly detection system for a long range autonomous underwater vehicle. Proceedings of the Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans Conference, 2015: 1–6.

Raskoff, K.A., and G.I. Matsumoto. 2015. Caveat lector: The perils of critical thinking for today’s students. California Classroom Science, 27(6): 1–4. https://www.researchgate.net/publication/277248305_Caveat_Lector_The_Perils_of_Critical_Thinking_for_Today's_Students

Ribalet, F., J. Swalwell, S. Clayton, V. Jimenez, S. Sudek, Y. Lin, Z. Johnson, A.Z. Worden, and E.V. Armbrust. 2015. Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. Proceedings of the National Academy of Sciences of the United States of America, 112: 8008–8012. http://dx.doi.org/10.1073/pnas.1424279112

Rouse, G.W., N.G. Wilson, J.I. Carvajal, and R.C. Vrijenhoek. 2015. New deep-sea species of Xenoturbella and the position of Xenacoelomorpha. Nature, 530: 94–97. http://dx.doi.org/10.1038/nature16545

Sackett, D.K., J.C. Drazen, C.A. Choy, B. Popp, and G.L. Pitz. 2015. Mercury sources and trophic ecology for Hawaiian bottomfish. Environmental Science & Technology, 49: 6909–6918. http://dx.doi.org/10.1021/acs.est.5b01009

Sanamyan, N.P., K.E. Sanamyan, and L. Lundsten. 2015. Two new deepwater sea anemones (Cnidaria: Anthozoa: Actiniaria) Sicyonis heliodiscus sp.n. (Actinostolidae) and Hormathia pacifica sp.n. (Hormathiidae) from Pacific. Invertebrate Zoology, 12: 131–149. https://doi.org/10.15298/invertzool.12.2.02

Sassoubre, L.M., K.M. Yamahara, and A.B. Boehm. 2015. Temporal stability of the microbial community in sewage-polluted seawater exposed to natural sunlight cycles and marine microbiota. Applied and Environmental Microbiology, 81: 2107–2116. http://dx.doi.org/10.1128/AEM.03950-14

Seegers, B.N., J.M. Birch, R. Marin, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Robertson, and B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography, 60: 754–764. http://dx.doi.org/10.1002/lno.10082

Sevadjian, J.C., E.E. McPhee-Shaw, B.Y. Raanan, O.M. Cheriton, and C.D. Storlazzi. 2015. Vertical convergence of resuspended sediment and subducted phytoplankton to a persistent detached layer over the southern shelf of Monterey Bay, California. Journal of Geophysical Research: Oceans, 120: 3462–3483. http://dx.doi.org/10.1002/2015jc010785

Ševčíková, T., A. Horák, V. Klimeš, V. Zbránková, E. Demir-Hilton, S. Sudek, J. Jenkins, J. Schmutz, P. Přibyl, J. Fousek, C. Vlček, B.F. Lang, M. Oborník, A.Z. Worden, and M. Eliáš. 2015. Updating algal evolutionary relationships through plastid genome sequencing: Did alveolate plastids emerge through endosymbiosis of an ochrophyte?. Scientific Reports, 5: 1–12. http://dx.doi.org/10.1038/srep10134

Siebert, S., F.E. Goetz, S.H. Church, P. Bhattacharyya, F. Zapata, S.H.D. Haddock, and C.W. Dunn. 2015. Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones. Evodevo, 6: 22. http://dx.doi.org/10.1186/s13227-015-0018-2

Simmons, M.P., C. Bachy, S. Sudek, M.J. van Baren, L. Sudek, M. Ares, Jr., and A.Z. Worden. 2015. Intron invasions trace algal speciation and reveal nearly identical Arctic and Antarctic Micromonas populations. Molecular Biology and Evolution, 32(9): 2219–2235. http://dx.doi.org/10.1093/molbev/msv122

Smith Jr, K., M. Messié, A. Sherman, C. Huffard, B. Hobson, H. Ruhl, and A. Boetius. 2015. "Navigating the uncertain future of global oceanic time series." EOS, 96: 28 October 2015. http://dx.doi.org/10.1029/2015eo038095

Smith, J.M., J. Damashek, F.P. Chavez, and C.A. Francis. 2015. Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean. Limnology and Oceanography, 62: 596–609. http://dx.doi.org/10.1002/lno.10235

Stanway, M.J., B. Kieft, T. Hoover, B. Hobson, D. Klimov, J. Erickson, B.Y. Raanan, D.A. Ebert, and J. Bellingham. 2015. White shark strike on a long-range AUV in Monterey Bay. In OCEANS 2015-Genova, Genova, Italy, May 2015, 1–7. IEEE. https://doi.org/10.1109/OCEANS-Genova.2015.7271726

Thompson, D., D. Caress, H. Thomas, and D. Conlin. 2015. MBARI mapping AUV operations in the Gulf of California 2015. In Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Washington, D.C., 2016: 1–7.

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