Mills, C.E., and S.H.D. Haddock. 2007. Key to the ctenophora. Light and Smith's Manual: Intertidal invertebrates of the central California coast: 189–199.
Mills, C.E., S.H.D. Haddock, C.W. Dunn, and P.R. Pugh. 2007. Key to the siphonophora. Light and Smith's Manual: Intertidal invertebrates of the central California coast: 150–166.
Sweeney, A.M., S.H.D. Haddock, and S. Johnsen. 2007. Comparative visual acuity of coleolid cephalopods. Integrative and Comparative Biology, 47: 808–814.
Collins, A.G., B. Bentlage, G.I. Matsumoto, S.H.D. Haddock, K.J. Osborn, and B. Schierwater. 2006. Solution to the phylogenetic enigma of Tetraplatia, a worm-shaped cnidarian. Biological Letters, 2: 120–124. http://dx.doi.org/10.1098/rsbl.2005.0372
Gasca, R., E. Suárez-Morales, and S.H.D. Haddock. 2006. Symbiotic associations between crustaceans and gelatinous zooplankton in deep and surface waters off California. Marine Biology, 151: 233–242.
Miller, S.D, S.H.D. Haddock, C.D. Elvidge, and T.F. Lee. 2006. Twenty thousand leagues over the seas: The first satellite perspective on bioluminescent ‘milky seas’. International Journal of Remote Sensing, 27: 5131–5143. http://dx.doi.org/10.1080/01431160600554298
Dunn, C.W., P.R. Pugh, and S.H.D. Haddock. 2005. Marrus claudanielis, a new species of deep-sea physonect siphonophore (Siphonophora, Physonectae). Bulletin of Marine Science, 76: 699–714.
Dunn, C.W., P.R. Pugh, and S.H.D. Haddock. 2005. Molecular Phylogenetics of the Siphonophora (Cnidaria), with implications for the evolution of functional specialization. Systematic Biology, 54: 916–935. http://dx.doi.org/10.1080/10635150500354837
Haddock, S.H.D., and C.W. Dunn. 2005. The complex world of siphonophores. JMBA Global Marine Environment, 2: 24–25.
Haddock, S.H.D., C.W. Dunn, and P.R. Pugh. 2005. A reexamination of siphonophore terminology and morphology, applied to the description of two new prayine species with remarkable bio-optical properties. Journal of the Marine Biological Association of the United Kingdom, 85: 695–707. https://doi.org/10.1017/S0025315405011616
Haddock, S.H.D., C.W. Dunn, P.R. Pugh, and C.E. Schnitzler. 2005. Bioluminescent and red-fluorescent lures in a deep-sea siphonophore. Science, 309: 263. http://dx.doi.org/10.1126/science.1110441
Herren, C.M., S.H.D. Haddock, C. Johnson, M.A. Moline, C.M. Orrico, and J.F. Case. 2005. A multi-platform bathyphotometer for fine-scale, coastal bioluminescence research. Limnology and Oceanography: Methods, 3: 247–262.
Miller, S.D, S.H.D. Haddock, C.D. Elvidge, and T.F. Lee. 2005. Detection of a bioluminescent milky sea from space. Proceedings of the National Academy of Sciences, 102: 14181–14184. http://dx.doi.org/10.1073/pnas.0507253102
Seibel, B.A., B.H. Robison, and S.H.D. Haddock. 2005. Post-spawning egg care by a squid. Nature, 438: 929. http://dx.doi.org/10.1038/438929a
Shulman, I., D.J. McGillicuddy Jr., M.A. Moline, S.H.D. Haddock, J.C. Kindle, D. Nechaev, and M.W. Phelps. 2005. Bioluminescence intensity modeling and sampling strategy optimization. Journal of Atmospheric and Oceanic Technology, 22: 1267–1281. https://doi.org/10.1175/JTECH1760.1
Widder, E.A., B.H. Robison, K.R. Reisenbichler, and S.H.D. Haddock. 2005. Using red light for in situ observations of deep-sea fishes. Deep-Sea Research Part I, 52: 2077–2085. http://dx.doi.org/10.1016/j.dsr.2005.06.007
Gasca, R., and S.H.D. Haddock. 2004. Associations between gelatinous zooplankton and hyperiid amphipods (Crustacea: Peracarida) in the Gulf of California. Hydrobiologia, 530/531: 529–535. http://dx.doi.org/10.1007/s10750-004-2657-5
Haddock, S.H.D. 2004. A golden age of gelata: past and future research on planktonic ctenophores and cnidarians. Hydrobiologia, 530: 549–556. http://dx.doi.org/10.1007/s10750-004-2653-9
Robison, B.H., K.R. Reisenbichler, J.C. Hunt, and S.H.D. Haddock. 2003. Light Production by the Arm Tips of the Deep-Sea Cephalopod Vampyroteuthis infernalis. The Biological Bulletin, 205: 102–109. http://dx.doi.org/10.2307/1543231
Shulman, I., S.H.D. Haddock, D.J. McGillicuddy, Jr., J.D. Paduan, and P.W. Bissett. 2003. Numerical modeling of bioluminescence distributions in the coastal ocean. Journal of Atmospheric and Oceanic Technology, 20: 1060–1068. http://dx.doi.org/10.1175/1468.1
Cairns, S.D., D.R. Calder, A. Brinckmann-Voss, C.B. Castro, D.G. Fautin, P.R. Pugh, C.E. Mills, W.C. Jaap, M.N. Arai, S.H.D. Haddock, and D.M. Opresko. 2002. Common and scientific names of aquatic invertebrates from the United States and Canada: Cnidaria and Ctenophora - Second Edition: 115.
Case, J.F., P.J. Herring, B.H. Robison, S.H.D. Haddock, L.J. Kricka, and P.E. Stanley. 2001. Bioluminescence and Chemiluminescence 2000: 517.
Haddock, S.H.D., TJ. Rivers, and B.H. Robison. 2001. Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence. Proceedings of the National Academy of Sciences of the United States of America, 98: 11148–11151. http://dx.doi.org/10.1073/pnas.201329798
Podar, M., S.H.D. Haddock, M.L. Sogin, and G.R. Harbison. 2001. A molecular phylogenetic framework for the phylum Ctenophora using 18S rRNA genes. Molecular Phylogenetics and Evolution, 21: 218–230. http://dx.doi.org/10.1006/mpev.2001.1036
Haddock, S.H.D., and J.F. Case. 1999. Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores. Marine Biology, 133: 571–582. http://dx.doi.org/10.1007/s002270050497
Alldredge, A.L., U. Passow, and S.H.D. Haddock. 1998. The characteristics and transparent exopolymer particle (TEP) content of marine snow formed from thecate dinoflagellates. Journal of Plankton Research, 20(3): 393–406. doi:10.1093/plankt/20.3.393
Haddock, S.H.D., D.J. Neilson, E.A. Widder, and J.F. Case. 1998. Feasibility of using in situ measurements of bioluminescence spectra to determine the vertical distribution of plankton In Pelagic Biogeography ICoPB II: Proceedings of the second international conference: Final report of SCOR/IOC working group 93 “Pelagic Biogeography,” Noordwijkerhout, The Netherlands, July 1995, 137–142. Paris, France: UNESCO. https://unesdoc.unesco.org/ark:/48223/pf0000112761
White, G.B., A. Pfahnl, S.H.D. Haddock, S. Lamers, R.M. Greenberg, and P.A. Anderson. 1998. Structure of a putative sodium channel from the sea anemone Aiptasia pallida. Invert Neurosci, 3: 317–326.
Hsin, Y.L. and S.H.D. Haddock. 1997. The enclosing latticed sphere of Tuscaridium cygneum (Murray), a eurybathyal phaeodarian Radiolaria, from the North Pacific. Paleontological Research, 1: 144–149. https://biostor.org/reference/118201