Ricketts, E.R., J.P. Kennett, T.M. Hill, and J.P. Barry. 2005. Effects of CO2 hydrate on deep-sea foraminiferal assemblages. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Thistle, D., K.R. Carman, L. Sedlacek, P.G. Brewer, J.W. Fleeger, and J.P. Barry. 2005. Deep-ocean experimental tests of the sensitivity of sediment-dwelling animals to imposed CO2 gradients. Marine Ecology Progress Series, 289: 1–4.
Barry, J.P., K.R. Buck, C.F. Lovera, L. Kuhnz, P.J. Whaling, E.T. Peltzer, P. Walz, and P.G. Brewer. 2004. Effects of direct ocean CO2 injection on deep-sea meiofauna. Journal of Oceanography, 60: 759–766. http://dx.doi.org/10.1007/s10872-004-5768-8
Carman, K.R., D. Thistle, J. Fleeger, and J.P. Barry. 2004. The influence of introduced CO2 on deep-sea metazoan meiofaunal. Journal of Oceanography, 60: 767–772.
Goffredi, S.K., J.P. Barry, and K.R. Buck. 2004. Vesicomyid symbioses from Monterey Bay (Central California) cold seeps. Symbiosis, 36: 1–27.
Barry, J.P., B.A. Seibel, J.C. Drazen, M.N. Tamburri, K.R. Buck, C. Lovera, L. Kuhnz, E.T. Peltzer, K. Osborn, P.J. Whaling, P. Walz, and P.G. Brewer. 2003. Deep-sea field experiments on the biological impacts of direct deep-sea CO2 injection. Proceedings of the Second Annual Conference on Carbon Sequestration: 1–7.
Barry, J.P., J. Grebmeier, J. Smith, and R.B. Dunbar. 2003. Bathymetric versus oceanographic control of benthic megafaunal patterns in the Ross Sea, Antarctica. Antarctic Research Series, 78: 327–354.
Grebmeier, J.G., G.R. DiTullio, J.P. Barry, and L.W. Cooper. 2003. Benthic carbon cycling in the Ros Sea polynya, Antarctica: Benthic community metabolism and sediment tracers. Antarctic Research Series, 78: 301–326.
Kogan, I., C.K. Paull, L. Kuhnz, E. Burton, S. von Thun, H.G. Greene, and J.P. Barry. 2003. Environmental impact of the ATOC/Pioneer Seamount Submarine Cable: 80.
Paull, C.K., W. Ussler, III, H.G. Greene, R. Keaten, P. Mitts, and J.P. Barry. 2003. Caught in the act: The December 20th, 2001 gravity flow event in Monterey Canyon. Geo-Marine Letters, 22: 227–232.
Yoklavich, M., G. Cailliet, D. Oxman, J.P. Barry, and D.C. Lindquist. 2003. Ecosystem changes in a California estuary: a characterization of Elkhorn Slough. Fishes: 163–185.
Barry, J.P., K.R. Buck, R.K. Kochevar, D.C. Nelson, Y. Fujiwara, S.K. Goffredi, and J. Hashimoto. 2002. Methane-based symbiosis in a mussel, Bathymodiolus platifrons, from cold seeps in Sagami Bay, Japan. Invertebrate Biology, 121: 47–54.
Eastman, J.T., and J.P. Barry. 2002. Underwater video observation of the Antarctic toothfish, Dissostichus mawsoni (Perciformes: Nototheniidae) in the Ross Sea, Antarctica. Polar Biology, 25: 391–395.
Goffredi, S.K., and J.P. Barry. 2002. Energy acquisition in vesicomyid symbioses. Cahiers Biologie Marine, 43: 345–350.
Goffredi, S.K., and J.P. Barry. 2002. Species-specific variation in sulfide physiology between closely related vesicomyid clams. Marine Ecology Progress Series, 225: 227–238. http://dx.doi.org/10.3354/meps225227
Orange, D.L., J. Yun, N. Maher, J.P. Barry, and H.G. Greene. 2002. Tracking California seafloor seeps with bathymetry, backscatter and ROVs. Continental Shelf Research, 22: 2273–2290. http://dx.doi.org/10.1016/S0278-4343(02)00054-7
Bernhard, J.M., K.R. Buck, and J.P. Barry. 2001. Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera. Deep Sea Research Part I: Oceanographic Research Papers, 48: 2233–2249. http://dx.doi.org/10.1016/S0967-0637(01)00017-6
Johnson, K.S., C.K. Paull, J.P. Barry, and F.P. Chavez. 2001. A decadal record of underflows from a coastal river into the deep sea. Geology, 29: 1019–1022. http://dx.doi.org/10.1130/0091-7613(2001)029<1019_Adrouf>2.0.Co;2
Torres, M.E., J.P. Barry, D.A. Hubbard, and E. Suess. 2001. Reconstructing the history of fluid flow at cold seep sites from Ba/Ca ratios in vesicomyid clam shells. Limnology and Oceanography, 46: 1701–1708.
Barry, J.P., and N. Maher. 2000. Observation of the prickly shark, Echinorhinus cookei, from the oxygen minimum zone in Santa Barbara Basin, California. California Fish and Game, 86: 213–215.
Barry, J.P., K.R. Buck, S.K. Goffredi, and J. Hashimoto. 2000. Ultrastructure studies of two chemosynthetic invertebrate-bacterial symbioses (Lamellibrachia sp. and Acharax sp.) from the Hatsushima cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 16: 91–99.
Buck, K.R., J.P. Barry, and A.G.B. Simpson. 2000. Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Phycology, 36: 117–126.
DiTullio, G.R., J. Grebmeier, K.R. Arrigo, M.P. Lizotte, D.H. Robinson, A. Leventer, J.P. Barry, M. VanWoert, and R.B. Dunbar. 2000. Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature, 404: 595–598. http://dx.doi.org/10.1038/35007061
Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of the Ross Sea Polynya ecosystem: Climatic forcing of polar primary and export productio. EOS, Transactions of the American Geophysical Union.
Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, L. Langone, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of production and C export in the Ross Sea Polyny. JGOFS symposium.
Peek, A.S., B.S. Gaut, R.A. Feldman, J.P. Barry, R.E. Kochevar, R.A. Lutz, and R.C. Vrijenhoek. 2000. Neutral and nonneutral mitochondrial genetic variation in deep sea clams from the family Vesicomyidae. Journal of Molecular Evolution, 50: 141–153.
Ahmad, A., J.P. Barry, and D.C. Nelson. 1999. Phylogenetic affinity of a wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon, California, with Thioploca spp. Applied and Environmental Microbiology, 65: 270–277.
Barry, J.P., and R.E. Kochevar. 1999. Calyptogena diagonalis, a new vesicomyid bivalve from subduction zone cold seeps in the eastern north Pacific. Veliger, 42: 117–123.
Orange, D.L., H.G. Greene, D.L. Reed, J.B. Martin, C.M. McHugh, W.B.F. Ryan, N. Maher, D.S. Stakes, and J.P. Barry. 1999. Widespread fluid expulsion on a translational continental margin: Mud volcanoes, fault zones, headless canyons, and organic-rich substrate in Monterey Bay, California. Geological Society of America Bulletin, 111: 992–1009. http://dx.doi.org/10.1130/0016-7606(1999)111<0992_Wfeoat>2.3.Co;2
Pennington, J.T., M.N. Tamburri, and J.P. Barry. 1999. Development, temperature tolerance, and settlement preference of embryos and larvae of the articulate brachiopod Laqueus californianus. Biological Bulletin, 196: 245–256. http://dx.doi.org/10.2307/1542949
Sagarin, R.D., J.P. Barry, S.E. Gilman, and C.H. Baxter. 1999. Climate-related change in an intertidal community over short and long time scales. Ecological monographs, 69: 465–490. http://dx.doi.org/10.1890/0012-9615(1999)069[0465:Crciai]2.0.Co;2
Tamburri, M.N., and J.P. Barry. 1999. Adaptations for scavenging by three diverse bathyla species, Eptatretus stouti, Neptunea amianta and Orchomene obtusus. Deep-Sea Research I, 46: 2079–2093. http://dx.doi.org/10.1016/S0967-0637(99)00044-8
Tamburri, M.N., and J.P. Barry. 1999. Corrigendum to "Adaptations for scavenging by three diverse bathyla species Eptatretus stouti, Neptunea amianta and Orchomene obtusus" [Deep-Sea Research 46 (1999) 2079-2093]. Deep Sea Research Part I: Oceanographic Research Papers, 47: 755.
Barry, J.P., and R.E. Kochevar. 1998. A tale of two clams: Differing chemosynthetic life styles among vesicomyids in Monterey Bay cold seeps. Cahiers de Biologie Marine, 39: 329–331.
Dawe, T.C., D.S. Stakes, P.R. McGill, J.P. Barry, and S. Etchemendy. 1998. Subsea instrument deployments: methodology and techniques using a work class Remotely Operated Vehicle (ROV). Oceans '98, 3: 1589–1593.
Barry, J.P., R.E. Kochevar, and C.H. Baxter. 1997. The influence of pore-water chemistry and physiology on the distribution of vesicomyid clams at cold seeps in Monterey Bay: Implications for patterns of chemosynthetic community organization. Limnology and Oceanography, 42: 318–328.
Barry, J.P., R.E. Kochevar, C.H. Baxter, and C. Harrold. 1997. Calyptogena packardana, a new species of vesicomyid bivalve from cold seeps in Monterey Bay, California. Veliger, 40: 341–349.
Barry, J.P., R.E. Kochevar, J. Hashimoto, Y. Fujiwara, K. Fujikura, and H.G. Greene. 1997. Studies of the physiology of chemosynthetic fauna at cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 13: 417–423.
Greene, H.G., J.P. Barry, J. Hashimoto, Y. Fujiwara, R.E. Kochevar, and B.H. Robison. 1997. A submersible-based comparison of cold-seep regions in Sagami and Monterey Bays. JAMSTEC Journal of Deep Sea Research: 395–415.
Lisin, S.E., E.E. Hannan, R.E. Kochevar, C. Harrold, and J.P. Barry. 1997. Temporal variation in gametogenic cycles of vesicomyid clams. Invertebrate Reproduction and Development, 31: 307–318. http://dx.doi.org/10.1080/07924259.1997.9672590
Barry, J.P., H.G. Greene, D.L. Orange, C.H. Baxter, B.H. Robison, R.E. Kochevar, J.W. Nybakken, D.L. Reed, and C.M. McHugh. 1996. Biologic and geologic characteristics of cold seeps in Monterey Bay, California. Deep Sea Research Part I: Oceanographic Research Papers, 43: 1739–1762. https://doi.org/10.1016/S0967-0637(96)00075-1
Barry, J.P., M.M. Yoklavich, G.M. Cailliet, D.A. Ambrose, and B.S. Antrim. 1996. Trophic ecology of the dominant fishes in Elkhorn Slough, California, 1974-1980. Estuaries, 19: 115–138.
McHatton, S.C., J.P. Barry, H.W. Jannasch, and D.C. Nelson. 1996. High nitrate concentrations in vacuolate, autotrophic marine Beggiatoa spp.. Applied and Environmental Microbiology, 62: 954–958.
Orange, D.L., J. Barry, N. Maher, D. Stakes, J. Paduan, H.G. Greene, J.B. Martin, B. McAdoo, J. Yun, and Anonymous. 1996. ROV observations of fluid expulsion in Monterey Bay, California [Monograph]. American Association of Petroleum Geologists 1996 annual convention.
Orange, D.L., J. Barry, N. Maher, H.G. Greene, J.B. Martin, B. McAdoo, J. Yun, and Anonymous. 1996. ROV studies of fluid expulsion along a transpressional continental margin (Monterey Bay, California) [Monograph]. 1996 ocean sciences meeting.
Barry, J.P., C.H. Baxter, R.D. Sagarin, and S.E. Gilman. 1995. Climate-related long-term faunal changes in a California rocky intertidal community. Science, 267: 672–675. http://dx.doi.org/10.1126/science.267.5198.672
Stoker, C.R., D.R. Barch, B.P. Hine III, and J. Barry. 1995. Antarctic undersea exploration using a robotic submarine with a telepresence user interface. IEEE, Expert Intelligent Systems & Their Applications, 10: 14–23.
Greene, H.G., M.M. Yoklavich, J.P. Barry, D.L. Orange, D.E. Sullivan, G.M. Cailliet, and Anonymous. 1994. Geology and related benthic habitats of Monterey Canyon, Central California [Monograph]. 1994 ocean sciences meeting.
Stoker, C.R., J. Barry, D.R. Barch, and B.P. Hine III. 1994. Use of telepresence and virtual reality in undersea exploration: 1993 Antarctic telepresence experiment. Technologies in Environmental Applications: 37–44.
Barry, J.P., and M.J. Ehret. 1993. Diet, food preference, and algal availability for fishes and crabs on intertidal reef communities in southern California. Environmental Biology of Fishes, 37: 75–95.
Greene, H.G., D.S. Stakes, D.L. Orange, J.P. Barry, and B.H. Robison. 1993. Application of a remotely operated vehicle in geologic mapping of Monterey Bay, California, USA. Proceedings of the American Academy of Underwater Sciences: 67–81.
McFeters, G.A., J.P. Barry, and J.P. Howington. 1993. Distribution of enteric bacteria in Antarctic seawater surrounding a sewage outfall. Water Research, 27: 645–650.
Barry, J.P., and C.H. Baxter. 1992. Survey design considerations for deep-sea benthic communities using ROVs. Marine Technology Society Journal, 26: 20–26.
Howington, J.P., G.A. McFeters, J.P. Barry, and J.J. Smith. 1992. Distribution of the McMurdo Station sewage plume. Marine Pollution Bulletin, 25: 9–12.
Grebmeier, J.M., and J.P. Barry. 1991. The influence of oceanographic processes on pelagic-benthic coupling in polar regions: A benthic perspective. Journal of Marine Systems, 2: 495–518.
Yoklavich, M.M., G.M. Cailliet, J.P. Barry, D.A. Ambrose, and B.S. Antrim. 1991. Temporal and spatial patterns in abundance and diversity of fish assemblages in Elkhorn Slough, California. Estuaries, 14: 465–480.