CLUSTAL 2.1 multiple sequence alignment Synechococcus -------------------------AGGATG-AACGCTGGCGGCGTGCTTAACACATGCA 34 Prochlorococcus ---------------------------GATG-AACGCTGGCGGCGTGCTTAACACATGCA 32 Trichodesmium ------GAGAGTTTGATCCTGGCTCAGGATG-AACGCTGGCGGTCTGCTTAACACATGCA 53 SAR11 TAACTTGAGAGTTTGATCATGGCTCAGAACG-TACGCTGGCGGCACGCCTAACACATGCA 59 Dinoroseobacter -------AGAGTTTGATCCTGGCTCAGAACG-AACGCTGGCGGCAGGCTTAACACATGCA 52 Rhodoferax ----------------------------------------------------------CA 2 Nitrosomonas -------AGAGTTTGATCCTGGCTCAGATTG-AACGCTGGCGGCATGCTTTACACATGCA 52 Thermococcus ------TTCCGGTTGATCCTGCCGGAGGCCACTGCTATGGGGGTCCGACTAAGCCATGCG 54 *. Synechococcus AGTCGAACG------------AAC-CTTCGG-GTTAGTGGCGGACGGGTGAGTAACGCGT 80 Prochlorococcus AGTCGAACG------------AAC-CTTCGG-GTTAGTGGCGGACGGGTGAGTAACGCGT 78 Trichodesmium AGTCGAACG------------GACTCTTCGGAGTTAGTGGCGGACGGGTGAGTAACGCGT 101 SAR11 AGTCGAACG------------AAGTAGCAATACTTAGTGGCAGACGGGTGAGTAACATGT 107 Dinoroseobacter AGTCGAGCG------------AAGACTTCGGTCTTAGCGGCGGACGGGTGAGTAACGCGT 100 Rhodoferax ATAC---------------------CTGGATGGCGAGTGGCGAACGGGTGAGTAATATAT 41 Nitrosomonas AGTCGAACGGCAGCGGGGGCTTCGGCCTGCCGGCGAGTGGCGAACGGGTGAGTAATACAT 112 Thermococcus AGTCATGGGG-----------CGCGCTCTGCGCGCACCGGCGGACGGCTCAGTAACACGT 103 * :* . * ***..**** * ***** . .* Synechococcus GGG-AATCTGCCCTCAGGAGGGGGATAACGGCTGGAAACGGCCGCTAATACCCCATATGC 139 Prochlorococcus GGG-AATCTGCCCTCAGGAGGGGGATAACGGTTGGAAACGGCCGCTAATACCCCATATGC 137 Trichodesmium GAG-AATCTGCCTTCAGGTCTGGGACAACAGAAGGAAACTTCTGCTAATCCCGGATGAGC 160 SAR11 GGG-TATCTACCCTTTGGCCTGGAATAACACGAGGAAACTTGTGCTAATACCGGATAAGT 166 Dinoroseobacter GGG-AACATACCCTTTGGTACGGAATAGCCCTGGGAAACTGGGAGTAATACCGTATGTGG 159 Rhodoferax CGG-AACGTGCCCAGTCGTGGGGGATAACGCAGCGAAAGCTGTGCTAATACCGCATACGA 100 Nitrosomonas CGG-AACGTGTCCTTAAGTGGGGAATAACGCATCGAAAGATGTGCTAATACCGCATAT-C 170 Thermococcus CGGTAACCTACCCTCGGGAGGGGGATAACCCCGGGAAACTGGGGCTAATCCCCCATAGGC 163 .* :* *. * : * **.* *.* **** . ****.** **. Synechococcus CGAGAGGT-------------------GAAATGAATTT----CGCCTGAGGATGAGCCCG 176 Prochlorococcus CGAGAGGT-------------------GAAATGAATTT----CGCCTGAGGATGAGCCCG 174 Trichodesmium CTTAGGGT-------------------AAAAGATAAAT----TGCCTGGAGATGAGCTCG 197 SAR11 CTTTACGG-----------------AGAAAGCTTTATG----CACCATTGGATGAGCCCG 205 Dinoroseobacter CCTTCGGG-----------------CGAAAGATTTAT-----CGCCAAAGGATTGGCCCG 197 Rhodoferax TCTCTGGATG--AAAGCGGGGGACTCGCAAGGGCCTCG----CGCGATTGGAGCGGCCGA 154 Nitrosomonas TCTGAGGAGA--AAAGCAGGGG-ATCGCAAG-ACCTTG----CGCTAAAGGAGCGGCCGA 222 Thermococcus CTGAGGTACTGGAAGGTCCTCAGGCCGAAAGGGGCATCTGCCCGCCCGAGGATGGGCCGG 223 **. : .* .** .** . Synechococcus CGTCTGATTAGCTAGTTGGTGAGGTAAGAGCTCACCAAGGCATCGATCAGTAGCTGGTCT 236 Prochlorococcus CGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCATCGATCAGTAGCTGGTCT 234 Trichodesmium CGTCTGATTAGCTAGTTGGTGTGGTAAAAGCATACCAAGGCAACGATCAGTAGCTGGTCT 257 SAR11 CACTTGATTAGTTTGTTGGTAGGGTAATGGCCTACCAAGACTATGATCAATAGCTGATTT 265 Dinoroseobacter CGTTGGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCGACGATCCATAGCTGGTTT 257 Rhodoferax TATCAGATTAGCTAGTTGGTGGGGTAAAGGCCCACCAAGGCGACGATCTGTAGCTGGTCT 214 Nitrosomonas TGTCTGATTAGCTAGTTGGTGGGGTAAAGGCTTACCAAGGCAACGATCAGTAGTTGGTCT 282 Thermococcus CGGCCGATTAGGTAGTTGGTGGGGTAACGGCCCACCAAGCCGAAGATCGGTACGGGCCAT 283 . ****** *:******. ***** .** ****** * : **** .** * * Synechococcus GAGAGGATGATCAGCCACACTGGGACTGAGACACGG-CCCAGACTCCTACGGGAGGCAGC 295 Prochlorococcus GAGAGGATGATCAGCCACACTGGGACTGAGACACGG-CCCAGACTCCTACGGGAGGCAGC 293 Trichodesmium GAGAGGATGAGCAGCCACACTGGGACTGAGACACGG-CCCAGACTCCTACGGGAGGCAGC 316 SAR11 GAGAGGATGATCAGCCACATTGGGACTGAGACACGG-CCCAAACTCCTACGGGAGGCAGC 324 Dinoroseobacter GAGAGGATGATCAGCCACACTGGGACTGAGACACGG-CCCAGACTCCTACGGGAGGCAGC 316 Rhodoferax GAGAGGACGACCAGCCACACTGGAACTGAGACACGG-TCCAGACTCCTACGGGAGGCAGC 273 Nitrosomonas GAGAGGACGGCCAACCACACTGGGACTGAGACACGG-CCCAGACTCCTACGGGAGGCAGC 341 Thermococcus GAGAGTGGGAGCCCGGAGATGGACACTGAGACACGGGTCCAGGC-CCTACGGGGCGCAGC 342 ***** . *. *. * * *. ************ ***..* ********. ***** Synechococcus AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGGGATGAA 355 Prochlorococcus AGTGGGGAATTTTCCGCAATGGGCGCAAG-CTGACGGAGCAACGCCGCGTGAGGGATGAA 352 Trichodesmium AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAGACCGCGTGGGGGAGGAA 376 SAR11 AGTGGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAA 384 Dinoroseobacter AGTGGGGAATCTTAGACAATGGGGGCAACCCTGATCTAGCCATGCCGCGTGTGTGATGAA 376 Rhodoferax AGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGCAGGATGAA 333 Nitrosomonas AGTGGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGAGTGAAGAA 401 Thermococcus AGGCGCGAAACCTCCGCAATGCGGGCAACCGCGACGGGGGGACCCCCAGTGCCGTGGCAC 402 ** * ***: * .***** . *.** ** .* * ** .*** . *. Synechococcus GGCCTCTGGGCTGTAAACCTCTTTTCTCAAGGAAGAAG---------------------- 393 Prochlorococcus GGCCTCTGGGCTGTAAACCTCTTTTCTCAAGGAAGAAG---------------------- 390 Trichodesmium GGCTCTAGGGTTGTAAACCCCTTTTCTTTGGGAAGAAG---------------------- 414 SAR11 GGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAA---------------------- 422 Dinoroseobacter GGCCTTAGGGTCGTAAAGCACTTTCGCCAGGGATGATA---------------------- 414 Rhodoferax GGCCTTCGGGTTGTAAACTGCTTTTGTACGGAACGAAACGGTCTGCCTTAATACGGTGGG 393 Nitrosomonas GGCCTTCGGGTTGTAAAGCTCTTTTAGTCGGAAAGAAAGAGTTGCAATGAATAATTGTGA 461 Thermococcus AGCCACGG------------CTTTT--CCGGAGTGTAA---------------------- 426 .** * **** .*.. *::. Synechococcus -ATCTGACGGTACTTGAGGAATAAGCCACGGCTAATTCCGTGCCAGCAGCCGCGGTAATA 452 Prochlorococcus -ATCTGACGGTACTTGAGGAATAAGCCACGGCTAATTCCGTGCCAGCAGCCGCGGTAATA 449 Trichodesmium -ATCTGACGGTACCAAAGGAATCAGCCTCGGCTAACTCCGTGCCAGCAGCCGCGGTAATA 473 SAR11 ---ATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATA 479 Dinoroseobacter ---ATGACAGTACCTGGTAAAGAAACCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATA 471 Rhodoferax CTAATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATA 453 Nitrosomonas TTTATGACGGTACCGACAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATA 521 Thermococcus ------AAAGCTCCGGGAATAAGGGCTG-GGCAAGGCCGGTGGCAGCCGCCGCGGTAATA 479 *. * :* :* .. ***:*. *** ****.************ Synechococcus CGGGAGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGTCCGCAGGCGGCCCTTCA 512 Prochlorococcus CGGGAGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGTCCGCAGGCGGCTTTTCA 509 Trichodesmium CGGAGGAGGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCCGTAGATGGCCATGTA 533 SAR11 CGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTGAAAA 539 Dinoroseobacter CGGAGGGGGTTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGACCGATC 531 Rhodoferax CGTAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATATA 513 Nitrosomonas CGTAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGGGTGCGCAGGCGGTCTTGCA 581 Thermococcus CCGGCGGCCCAAGTGGTGGCCGCTATTATTGGGCCTAAAGCGTCCGTAGCCGGGCCCGTA 539 * . * ** * :. ** :** * ***** ***** * ** ** ** . Synechococcus AGTCTGCTGTTAAAACGTGGAGCTTAACTCCAT-CATGGCAGTGGAAACTGTTGGGCTTG 571 Prochlorococcus AGTCTGCTGTTAAAACGTGGAGCTTAACTCCAT-CAAGGCAGTGGAAACTGATTGGCTTG 568 Trichodesmium AGTCTGCTGTCAAAACCCAGGGCTCAACTCTGG-TCAGGCAGTGGAAACTACAAAGCTAG 592 SAR11 AGTTGGTGGTGAAATCCCAGAGCTTAACTCTGG-AACTGCCATCAAAACTTTTCAGCTAG 598 Dinoroseobacter AGTCAGAGGTGAAATCCCAGGGCTCAACCCTGG-AACTGCCTTTGATACTGTCGGTCTTG 590 Rhodoferax AGACAGATGTGAAATCCCCGGGCTCAACCTGGG-ACCTGCATTTGTGACTGTATAGCTAG 572 Nitrosomonas AGTCAGATGTGAAAGCCCCGGGCTTAACCTGGG-AATTGCGTTTGAAACTACAAGGCTAG 640 Thermococcus AGTCCCTGGCGAAATCCCACGGCTCAACCGTGGGGCTTGCTGGGGATACTGCGGGCCTTG 599 **: * *** * .*** *** . . ** .: *** . **:* Synechococcus AGTGTGGTAGGGGCAGAGGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAAG 631 Prochlorococcus AGTGTGGTAGGGGCAGAGGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAAG 628 Trichodesmium AGTTTGGTAGGGGCAAAGGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAAG 652 SAR11 AGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAG 658 Dinoroseobacter AGGTCGAGAGAGGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGG 650 Rhodoferax AGTACGGTAGAGGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGG 632 Nitrosomonas AGTGCAGCAGAGGGGAGTGGAATTCCATGTGTAGCAGTGAAATGCGTAGAGATGTGGAAG 700 Thermococcus GGACCGGGAGAGGCCGGGGGTACCCCTGGGGTAGGGGTGAAATCCTGTAATCCCAGGGGG 659 .* .. **.** .. .*:* * * **** .******* * :.* . *...* Synechococcus AACACCAGTGGCGAAGGCGCTCTGCTGGGCCATAACTGACGCTCATGGACGAAAGCCAGG 691 Prochlorococcus AACACCAGTGGCGAAGGCGCTCTGCTGGGCCATAACTGACGCTCATGGACGAAAGCCAGG 688 Trichodesmium AACATCGGTGGCGAAAGCGCTTTGCTAGACCAAAACTGACATTGAGGGACGAAAGCTAGG 712 SAR11 AATACCAATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGG 718 Dinoroseobacter AACACCAGTGGCGAAGGCGGCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGG 710 Rhodoferax AACACCGATGGCGAAGGCAATCCCCTGGACCTGTACTGACGCTCATGCACGAAAGCGTGG 692 Nitrosomonas AACACCGATGGCGAAGGCAGCTCCCTGGGTTGACACTGACGCTCATGCACGAAAGCGTGG 760 Thermococcus ACCGCCAGTGGCGAAGGCGCCCGGCTGGAACGGGTCCGACGGTGAGGGACGAAGGCCAGG 719 *. . *..* *****.**. **.* :* ***. * * * .****.** :** Synechococcus GGAGCGAAAGGGATTAGATACCCCTGTAGTCCTGGCCGTAAACGATGAACACTAGGTGTC 751 Prochlorococcus GGAGCGAAAGGGATTAGATACCCCTGTAGTCCTGGCCGTAAACGATGAACACTAGGTGTC 748 Trichodesmium GGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGTT 772 SAR11 GTAGCGAAGAGGATTAGATACCCTCGTAGTCCATGCCGTAAACGATGTGTGTTAGACGTT 778 Dinoroseobacter GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGTCGTC 770 Rhodoferax GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTT 752 Nitrosomonas GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTC 820 Thermococcus GGAGCGAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAAGGATGCGGGCTAGGTGTC 779 * ***.** ************* *******: ** **** **** . .* ** Synechococcus GGGG---GAATCGACCCCCTCGGTGTCGTAGCCAACGCGTTAAGTGTTCCGCCTGGGGAG 808 Prochlorococcus GGGG---GAATCGACCCCCTCGGTGTCGTAGCCAACGCGTTAAGTGTTCCGCCTGGGGAG 805 Trichodesmium GCCT---GTATCGACCCAGGCAGTGCCGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAG 829 SAR11 GG-----AAATTTATT--TTCAGTGTCGCAGGGAAACCGATAAACACACCGCCTGGGGAG 831 Dinoroseobacter GGGT---TGCATGCAA--TTCGGTGACACACCTAACGGATTAAGCATTCCGCCTGGGGAG 825 Rhodoferax GGGT---CT--TCACTGACTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAG 807 Nitrosomonas GGAT---CTAATTAAGGATTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAG 877 Thermococcus GGGCGAGCTTCGAGCTCGCCCGGTGCCGAAGGGAAGCCGTTAAGCCCGCCGCCTGGGGAG 839 * .**. *. * ** .: **. ************ Synechococcus TACGCACGCAAGTGTGAAACTCAAAGGAATTGACGGGGGCCCGC-ACAAGCGGTGGAGTA 867 Prochlorococcus TACGCACGCAAGTGTGAAACTCAAAGGAATTGACGGGGGCCCGC-ACAAGCGGTGGAGTA 864 Trichodesmium TACGCACGCAAGTGTGAAACTCAAAGGAATTGACGGGGGCCCGC-ACAAGCGGTGGAGTA 888 SAR11 TACGACCGCAAGGTTAAAACTCAAATGAATTGACGGGGACCCGC-ACAAGTAGTGGAGCA 890 Dinoroseobacter TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGC-ACAAGCGGTGGAGCA 884 Rhodoferax TACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGC-ACAAGCGGTGGATGA 866 Nitrosomonas TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGC-ACAAGCGGTGGATTA 936 Thermococcus TACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACTACAAGGGGTGGAGCG 899 **** ****** *.***** *** ******.*****.. *.* ***** .***** . Synechococcus TGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-CCTG-CGAATC 925 Prochlorococcus TGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-CCTG-CGAATC 922 Trichodesmium TGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGACTTGACAT-GTCG-CGAATC 946 SAR11 TGTGGTTTAATTCGAAGATACGCGCAGAACCTTACCAACACTTGACATGTTCGTCGCGAC 950 Dinoroseobacter TGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATACTTGTCGCGGC 944 Rhodoferax TGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACG--GAAGT 924 Nitrosomonas TGTGGATTAATTCGATGCAACGCGAAAAACCTTACCTACCCTTGACATGCTTG--GAATC 994 Thermococcus TGCGGTTTAATTGGATTCAACGCCGGGAACCTCACCGGGGG-CGACGG-CAGG--ATGAA 955 ** **:****** **: .:**** ..***** *** . ***. * . . Synechococcus TCTTGGAAACGAGAGAGTGCCTTCGGGAACGCA--GTGACAGGTGGTGCATGGCTGTCGT 983 Prochlorococcus TCTTGGAAACGAGAGAGTGCCTTTGGGAACGCA--GTGACAGGTGGTGCATGGCTGTCGT 980 Trichodesmium TAATGGAAACATGAGAGTGCCTTCGGGAGCGCG--AACACAGGTGGTGCATGGCTGTCGT 1004 SAR11 TCTAAGAGATTAGAGTTTTCGGTTCGGCCGGACGAAACACAGGTGCTGCATGGCTGTCGT 1010 Dinoroseobacter TTCCGGAGACGGAAGCCTTCAGTTCGGCTGGACGAGATACAGGTGCTGCATGGCTGTCGT 1004 Rhodoferax CGCTAGAGATAGCTTCGTGCTCGAAAGAGAGCCGTAACACAGGTGCTGCATGGCTGTCGT 984 Nitrosomonas TAATGGAGACATAAGAGTACCCGAAAGGGAGCCAAGACACAGGTGCTGCATGGCTGTCGT 1054 Thermococcus GGCCAGGCTGAAGGTCTTGCCGGACG---CGCCG----AGAGGAGGTGCATGGCCGCCGT 1008 .*. : * * . *. * ***:* ******** * *** Synechococcus CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCACGTCTTTAGT 1043 Prochlorococcus CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCACGTTTTTAGT 1040 Trichodesmium CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCTTTAGT 1064 SAR11 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCACTTTTAGT 1070 Dinoroseobacter CAGCTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCACACCCTTAGT 1064 Rhodoferax CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGT 1044 Nitrosomonas CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCACTAAT 1114 Thermococcus CAGCTCGTACCGTGAGGCGTCCACTTAAGTGTGGTAACGAGCGAGACCCGCGCCCCCAGT 1068 ********. ******. ** . ****** * ********..**** . *.* Synechococcus TGCCAG-CA-TTTAGTTGGG-------CACTCTAGAGAGACCGCCGGTGATAAACCGGAG 1094 Prochlorococcus TGCCAG-CA-TTCAGTTGGG-------CACTCTAGAGAGACCGCCGGTGATAAACCGGAG 1091 Trichodesmium TGCCAT-CA-TTAAGTTGGG-------CACTCTGAAGAGACTGCCGGTGACAAACCGGAG 1115 SAR11 TGCCAT-CA-TTAAGTTGGG-------CACTCTGAAAGAACTGCCAGTGATAAGCTGGAG 1121 Dinoroseobacter TGCCAG-CAGTTCGGCTGGG-------CACTCTAGGGGAACTGCCCGTGATAAGCGGGAG 1116 Rhodoferax TGCTA---CATTCAGTTGGG-------CACTCTAATGAGACTGCCGGTGACAAGCCGGAG 1094 Nitrosomonas TGCTAT-CATTTTTAATGAG-------CACTTTAGTGAGACTGCCGGTGACAAACCGGAG 1166 Thermococcus TGCCAGTCCTCCCCGCTGGGGAGGAGGCACTCTGGGGGGACCGCCGGCGATAAGCCGGAG 1128 *** * . . **.* **** *.. ...** *** * ** **.* **** Synechococcus GAAGGTGTGGATGACGTCAAGTCATCATGCCCCTTACATCCTGGGCTACACACGTACTAC 1154 Prochlorococcus GAAGGTGTGGATGACGTCAAGTCATCATGCCCCTTACATCCTGGGCTACACACGTACTAC 1151 Trichodesmium GAAGGTGGGGATGACGTCAAGTCAGCATGCCCCTTACGTCCTGGGCTACACACGTACTAC 1175 SAR11 GAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGTGTTGGGCTACACACGTGCTAC 1181 Dinoroseobacter GAAGGTGTGGATGACGTCAAGTCCTCATGGCCCTTACGGGTTGGGCTACACACGTGCTAC 1176 Rhodoferax GAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATAGGTGGGGCTACACACGTCATAC 1154 Nitrosomonas GAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGGGTAGGGCTTCACACGTAATAC 1226 Thermococcus GAAGGAGCGGGCGACGGTAGGTCAGTATGCCCCGAAACCCCCGGGCTACACGCGCGCTAC 1188 *****:* **. **** *.***. *** *** :* *****:***.** .*** Synechococcus AATGCTACGGACAAAGAGCAGCAAGTTCGCGAGGACAAGCAAATCTCATAAACCGTGGCT 1214 Prochlorococcus AATGCTACGGACAAAGGGCAGCAAGTTCGCGAGGACAAGCAAATCCCATAAACCGTGGCT 1211 Trichodesmium AATGGTTGGGACAGAGGGTAGCGAACCCGAGAGGGGAAGCCAATCCCCAAAACCCAGTCT 1235 SAR11 AATGGCATCTACAACAGGAAGCAAAACGGCAACGTTAAGCAAATCCCGAAAAG-ATGCCT 1240 Dinoroseobacter AATGGCAGTGACAATGG---------------------GTTAATCCCCAAAAG-CTGTCT 1214 Rhodoferax AATGGCTGGTACAAAGGGTTGCCAACCCGCGAGGGGGAGCTAATCCCACAAAGCCAGTCG 1214 Nitrosomonas AATGGCGTGTACAGAGGGTTGCCAACCCGCGAGGGGGAGCCAATCTCAGAAAGCACGTCG 1286 Thermococcus AATGGGCGGGACAATGGGATCCGACCCCGAAAGGGGAAGGGAATCCCCTAAACCCGCCCT 1248 **** ***. .. * **** * *** * Synechococcus CAGTTCAGATCGTAGGCTGCAACTCGCCTACGTGAAGGAGGAATCGCTAGTAATCGCAGG 1274 Prochlorococcus CAGTTCAGATCGTAGGCTGCAACTCGCCTACGTGAAGAAGGAATCGCTAGTAATCGCAGG 1271 Trichodesmium CAGTTCAGATTGCAGGCTGCAACTCGCCTGCATGAAGGAGGAATCGCTAGTAATCGCAGG 1295 SAR11 CAGTTCGGATTGCACTCTGCAACTCGAGTGCATGAAGCTGGAATTACTAGTAATCGTGGA 1300 Dinoroseobacter CAGTTCGGATTGTCCTCTGCAACTCGAGGGCATGAAGTCGGAATCGCTAGTAATCGCGTA 1274 Rhodoferax TAGTCCGGATCGTAGTCTGCAACTCGACTACGTGAAGTCGGAATCGCTAGTAATCGTGGA 1274 Nitrosomonas TAGTCCGGATCGGAGTCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGCGGA 1346 Thermococcus CAGTTCGGATCGCGGGCTGCAACTCGCCCGCGTGAAGCTGGAATCCCTAGTACCCGCGTG 1308 *** *.*** * **********. *.***** ***** ******. ** . . Synechococcus TCAGCATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGA 1334 Prochlorococcus TCAGCATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGA 1331 Trichodesmium TCAGCATACTGCGGTGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGA 1355 SAR11 TCAGCGTGCCACGGTGAATGCGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGG 1360 Dinoroseobacter ACAGCATGACGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGG 1334 Rhodoferax TCAGAATGTCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGG 1334 Nitrosomonas TCAGCATGCCGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGG 1406 Thermococcus TCATCATCGCGCGGCGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACTCCACCCG 1368 :** ..* .*** **** *** ** * **** ****************:*** . Synechococcus AGTTGGCCACGCCCGAAGCCGTTACTCCAACCCTTGTGG-AGGAGGACGTCGAAGGTGGG 1393 Prochlorococcus AGTTGGCCACGCCCGAAGTCGTTACTCCAACCCTTGTGG-AGGAGGACGCCGAAGGTGGG 1390 Trichodesmium AGTTGGCCACGCCCGAAGTCATTACTCTAACCCGAAAGGGAGGGGGATGCCGAAGGTAGG 1415 SAR11 AGTTGGTTCTACCTTAAGGCAAGGTTTTAAACC--CTTG----------ACCACGGTATA 1408 Dinoroseobacter AGTTGGTTCTACCTGACGGCCGTGCGCTAACCT--TCGGGAGGCAGCGGACCACGGTAGG 1392 Rhodoferax AGCGGGTTC--------------------------------------------------- 1343 Nitrosomonas AGTGGTTTTCACCAGAAGCAGGTAGCTTAACCG--TAAGGAGGGCGCTTGCCACGGTGGG 1464 Thermococcus AGCGGGGTCCGGGTGAGGCCTGGTCTCCCTTCGGGGAGGCCGG-----GTCGAGCCTGGG 1423 ** * Synechococcus GCTGATGACTGGGGTGAAGTCGTAACAAGGTAGCCGTACCGGAAGG-------------- 1439 Prochlorococcus GCTGATGACT-------------------------------------------------- 1400 Trichodesmium GCTGATGACTGGGGTGAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGTGGCTGGATCAC 1475 SAR11 GTCAGCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATTAC 1468 Dinoroseobacter ATCAGCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCAC 1452 Rhodoferax ------------------------------------------------------------ Nitrosomonas GGTCATGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCAC 1524 Thermococcus CTCCGTGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTACGGCTCGATCAC 1483 Synechococcus -------------------------------------------------------- Prochlorococcus -------------------------------------------------------- Trichodesmium CTCCTTT------------------------------------------------- 1482 SAR11 CTCCTT-------------------------------------------------- 1474 Dinoroseobacter CTCCTTTCTA---------------------------------------------- 1462 Rhodoferax -------------------------------------------------------- Nitrosomonas CTCCTTTC------------------------------------------------ 1532 Thermococcus CTCCTATCGCCGGAAACCCGTCCGGGGGGTTTAAGGGATGTCGGGCCTGCCTTCAG 1539