Enabling targeted sampling

High-resolution maps of the seafloor and detailed renderings of the water column are essential for directing future ocean observation and sampling activities. Where are the features of interest? How do they change over time? How can a limited number of collections or the placement of high-value instruments be optimized to test a specific hypothesis or to meet an observational need?

MBARI has historically met the challenges associated with targeted sampling by specifically directing ROVs to collect material or make particular measurements. More recently, the tandem use of AUV mapping and directed ROV operations has significantly improved on that model for a host of seafloor studies. The Controlled, Agile, and Novel Observing Network (CANON) initiative takes targeted sampling a step further. In CANON, a heterogeneous mix of mobile and drifting platforms is applied to observe changes in upper-watercolumn communities over time and space. The information obtained in real-time is used to direct sampling activities and to address questions concerning organismal responses to natural perturbations.

Precision navigation is one of the key challenges related to achieving targeted sampling capability. Developing time-series observations of the seafloor requires precise geo-registration of discrete observations so that data sets obtained at different times, even if separated by decades, are directly comparable. Within the water column, the navigation problem is different. Distinct water masses and the organisms within them are in constant motion. Consequently, a fundamental challenge for studying pelagic communities is to identify their trajectories in space and time, and to follow them. This kind of biologically focused observing can provide a new avenue for studying how marine organisms respond to their environment and to each other, as well as allowing direct observation of their life cycles. Autonomy and system reliability are important to realizing a robust targeted-sampling capability that can function without constant human supervision and in remote locations.

Enabling non-expert users to operate a robotic platform, or a group of robotic platforms, under real-world constraints is a formidable challenge, yet one that is key to transferring this new technology to the scientific community at-large. System reliability also becomes critically important as deployments extend in duration, and missions requiring coordinated measurements become increasingly complex. Subsystem failures and unanticipated environmental challenges must be tolerated without always necessitating human intervention.

These engineering challenges are in many ways analogous to creating driverless cars and managing drone networks, but underwater operation in the far reaches of the ocean complicate the problem space significantly. Specific technological pursuits related to targeted sampling include: 

  • Automating classification schemes for real-time characterization of marine features, organisms, and communities to identify targets for selective sampling. 
  • Developing capabilities to coordinate both human controlled and fully autonomous systems that acquire, preserve, and return samples of seawater, plants, animals, and other material. 
  • Developing seafloor and water-column navigation, mapping, and sensing capabilities with an accuracy that allows us to quantify change at the scale of individual organisms. 
  • Developing methods for assimilating empirical observations into four-dimensional, coupled physical and biological models.


Solving challenges
Taking the laboratory into the ocean
In Situ Ultraviolet Spectrophotometer
Midwater Respirometer System
Mobile flow cytometer
Enabling targeted sampling
Automated Video Event Detection
Gulper autonomous underwater vehicle
Advancing a persistent presence
Aerostat hotspot
Benthic event detectors
Benthic rover
Long-range autonomous underwater vehicle Tethys
Marine “soundscape” for passive acoustic monitoring
Monterey Ocean-Bottom Broadband Seismometer
Shark Café camera
Wave Glider-based communications hotspot
Emerging and current tools
Aerostat hotspot
Wave Glider-based communications hotspot
Wet WiFi
Data management
Oceanographic Decision Support System
Spatial Temporal Oceanographic Query System (STOQS) Data
Video Annotation and Reference System
Apex profiling floats
Benthic event detectors
Deep particle image velocimetry
Environmental Sample Processor (ESP)
How the ESP Works
Genomic sensors
ESP Web Portal
The ESP in the news
Investigations of imaging for midwater autonomous platforms
Lagrangian sediment traps
Laser Raman Spectroscopy
Midwater Respirometer System
Mobile flow cytometer
Smart underwater connector
OGC PUCK Reference Design Kit
Promoters and manufacturers
Manufacturer ID
Wave-Power Buoy
Vehicle technology
Benthic Rover
Gulper autonomous underwater vehicle
Imaging autonomous underwater vehicle
In Situ Ultraviolet Spectrophotometer
Seafloor mapping AUV
Long-range autonomous underwater vehicle Tethys
Mini remotely operated vehicle
ROV Doc Ricketts
ROV Ventana
Automated Video Event Detection
Machine learning
SeeStar Imaging System
Shark Café camera
Video Annotation and Reference System
Engineering Research
Bioinspiration Lab
Bringing the laboratory to the ocean
Bringing the ocean to the laboratory
Bio-inspired ocean exploration technologies
Machine autonomy
Fault prognostication
Wet WiFi
Machine autonomy blog
Persistence Lab publications
Technology publications
Technology transfer