Recent research publications

Images of the new Alviconcha species: 1) A. hessleri, 2) A. kojimai, 3) A. boucheti, 4) A. marisindica, 5) A. strummeri, 6) A. adamantis.

New Alviconcha species described and names. See S.B. Johnson, Waren, et al. below.

2018

Smith Jr., K.L., A.D. Sherman, P.R. McGill, R.G. Henthorn, J. Ferreira, and C.L. Huffard (In Press). Evolution of monitoring an abyssal time-series station in the N.E. Pacific over 28 years. Oceanography.

Dunlop, K.M., T. Jarvis, K.J. Benoit-Bird, C.M. Waluk, D.W. Caress, H. Thomas, and K.L. Smith Jr. (In Press). Detection and characterization of deep-sea benthopelagic animals from an autonomous underwater vehicle with a multibeam echosounder: a proof of concept and description of data-processing methods. Deep Sea Research 1.

Cyronak, T., A.J. Andersson, S. D’Angelo, P.J. Bresnahan, C. Davidson, A. Finlay, T. Kindeberg, J. Pennise, Y. Takeshita, and M. White (In Press). Spatial and temporal carbonate chemistry variability in two contrasting seagrass meadows: Implications for ocean acidification buffering capacities. Estuaries and Coasts.

Carter, B.R., R.A. Feely, N.L. Williams, A.G. Dickson, M.B. Fong, and Y. Takeshita (In Press). Updated Methods for Global Locally Interpolated Estimation of Alkalinity, pH, and Nitrate. Limnology and Oceanography: Methods.

Rouse, G.W., S.K. Goffredi, S.B. Johnson, and R.C. Vrijenhoek (2018). An inordinate fondness for Osedax (Siboglinidae: Annelida): Fourteen new species of bone worms from California. Zootaxa, 4377: 451. http://doi.org/10.11646/zootaxa.4377.4.1

Nielsen, K., J. Stachowicz, H. Carter, K. Boyer, M. Bracken, F. Chan, F. Chavez, K. Hovel, M. Kent, K. Nickols, J. Ruesink, J. Tyburczy, and S. Wheeler (2018). Emerging understanding of the potential role of seagrass and kelp as an ocean acidification management tool in California. California Ocean Science Trust.

Lodes, K., G.I. Matsumoto, and J. Magnusson (2018). Education And Research: Testing Hypotheses (EARTH). Marine Technology Society Journal, 52.

Feely, R.A., R.R. Okazaki, W.-J. Cai, N. Bednaršek, S.R. Alin, R.H. Byrne, and A. Fassbender (2018). The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico. Continental Shelf Research, 152: 50-60. https://doi.org/10.1016/j.csr.2017.11.002 http://www.sciencedirect.com/science/article/pii/S0278434317303643

2017

Zhang, Y., B. Kieft, M.J. Stanway, R.S. McEwen, B.W. Hobson, J.G. Bellingham, J.P. Ryan, T.C. O’Reilly, B.Y. Raanan, M. Messié, J.M. Smith, and F.P. Chavez (2017). Isotherm tracking by an autonomous underwater vehicle in drift mode. IEEE Journal of Oceanic Engineering, 42: 808-817. http://dx.doi.org/10.1109/JOE.2016.2625058

Williams, N.L., L.W. Juranek, R.A. Feely, K.S. Johnson, J.L. Sarmiento, L.D. Talley, A.G. Dickson, A.R. Gray, R. Wanninkhof, J.L. Russell, S.C. Riser, and Y. Takeshita (2017). Calculating surface ocean pCO2 from biogeochemical Argo floats equipped with pH: An uncertainty analysis. Global Biogeochemical Cycles, 31: 591-604. http://dx.doi.org/10.1002/2016GB005541

Webb, T.J., J.P. Barry, and C.R. McClain (2017). Abundance-occupancy relationships in deep sea wood fall communities. Ecography. http://dx.doi.org/10.1111/ecog.02618

Thomas, K.N., B.H. Robison, and S. Johnsen (2017). Two eyes for two purposes: in situ evidence for asymmetric vision in the cockeyed squids Histioteuthis heteropsis and Stigmatoteuthis dofleini. Philosophical Transactions B, 372: 1-9. http://dx.doi.org/10.1098/rstb.2016.0069

Thistle, D., L. Sedlacek, K.R. Carman, and J.P. Barry (2017). Influence of habitat heterogeneity on the community structure of deep-sea harpacticoid communities from a canyon and an escarpment site on the continental rise off California. Deep Sea Research Part I: Oceanographic Research Papers. http://dx.doi.org/10.1016/j.dsr.2017.03.005

Takeshita, Y. (2017). Understanding feedbacks between ocean acidification and coral reef metabolism. Journal of Geophyiscal Research: Oceans, 122: 1639-1642. http://doi.org/10.1002/2017JC012740

Tagliabue, A., A.R. Bowie, P.W. Boyd, K.N. Buck, K.S. Johnson, and M.A. Saito (2017). The integral role of iron in ocean biogeochemistry. Nature, 543: 51-59. http://dx.doi.org/10.1038/nature21058

Symons, W.O., E.J. Sumner, C.K. Paull, M.J.B. Cartigny, J.P. Xu, K.L. Maier, T.D. Lorenson, and P.J. Talling (2017). A new model for turbidity current behavior based on integration of flow monitoring and precision coring in a submarine canyon. Geology, 45: 367-370. http://dx.doi.org/10.1130/G38764.1

Sutton, T.T., M.R.a. Clark, D.C. Dunn, P.N. Halpin, A.D. Rogers, J. Guinotte, S.J. Bograd, M.V. Angel, J.A.A. Perez, K. Wishner, R.L. Haedrich, D.J. Lindsay, J.C. Drazen, A. Vereshchaka, U. Piatkowski, T. Morato, K. Błachowiak-Samołyk, B.H. Robison, K.M. Gjerde, A. Pierrot-Bults, P. Bernal, G. Reygondeau, and M. Heino (2017). A global biogeographic classification of the mesopelagic zone. Deep Sea Research Part I: Oceanographic Research Papers. http://dx.doi.org/10.1016/j.dsr.2017.05.006

Straehler-Pohl, I., G.I. Matsumoto, and M. Acevendo (2017). Recognition of the Californian cubozoan population as a new species – Carybdea confusa n. sp. (Cnidaria, Cubozoa, Carybdeida). Plankton and Benthos Research, 12: 129-138. http://doi.org/10.3800/pbr.12.129

Sherlock, R.E., K.R. Walz, K.L. Schlining, and B.H. Robison (2017). Morphology, ecology, and molecular biology of a new species of giant larvacean in the eastern North Pacific: Bathochordaeus mcnutti sp. nov. Marine Biology, 164: 20. http://dx.doi.org/10.1007/s00227-016-3046-0

Schoening, T., J. Durden, I. Preuss, A. Branzan Albu, A. Purser, B. De Smet, C. Dominguez-Carrió, C. Yesson, D. de Jonge, D. Lindsay, J. Schulz, K.O. Möller, K. Beisiegel, L. Kuhnz, M. Hoeberechts, N. Piechaud, S. Sharuga, and T. Treibitz (2017). Report on the Marine Imaging Workshop 2017. Research Ideas and Outcomes, 3: e13820. https://doi.org/10.3897/rio.3.e13820

Sato, M. and K.J. Benoit-Bird (2017). Spatial variability of deep scattering layers shapes the Bahamian mesopelagic ecosystem. Marine Ecology Progress Series, 580: 69-82. https://doi.org/10.3354/meps12295

Sanborn, K.L., J.M. Webster, Y. Yokoyama, A. Dutton, J.C. Braga, D.A. Clague, J.B. Paduan, D. Wagner, J.J. Rooney, and J.R. Hansen (2017). New evidence of Hawaiian coral reef drowning in response to meltwater pulse-1A. Quaternary Science Reviews, 175: 60-72. https://doi.org/10.1016/j.quascirev.2017.08.022

Sakamoto, C.M., K.S. Johnson, L.J. Coletti, and H.W. Jannasch (2017). Pressure correction for the computation of nitrate concentrations in seawater using an in situ ultraviolet spectrophotometer. Limnology and Oceanography: Methods. http://dx.doi.org/10.1002/lom3.10209

Rodgers, K.B., P. Zhai, D. Iudicone, O. Aumont, B. Carter, A.J. Fassbender, S.M. Griffies, Y. Plancherel, L. Resplandy, R.D. Slater, and K. Toyama (2017). Western boundary currents as conduits for the ejection of anthropogenic carbon from the thermocline. US CLIVAR Variations: Frontiers in western boundary current research, 15:6-10.

Oju, B., E. Oka, S.P. Bishop, S. Chen, and A.J. Fassbender (2017). Decadal variability of the Kuroshio Extension system and its impact on subtropical mode water formation. US CLIVAR Variations: Frontiers in western boundary current research, 15:11-16.

Netburn, A.N., J.D. Kinsey, S.L. Bush, A. Djurhuus, J. Fernandez, C.L. Hoffman, D. McVeigh, K.I. Twing, and L. Bagge (2017). First HOV Alvin study of the pelagic environment at Hydrographer Canyon (NW Atlantic). Deep Sea Research Part II: Topical Studies in Oceanography. https://doi.org/10.1016/j.dsr2.2017.10.001

Messié, M. and F.P. Chavez (2017). Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems. Geophysical Research Letters, 44: 8979-8986. http://dx.doi.org/10.1002/2017GL074322

McLaughlin, K., A. Dickson, S.B. Weisberg, K. Coale, V. Elrod, C. Hunter, K.S. Johnson, S. Kram, R. Kudela, T. Martz, K. Negrey, U. Passow, F. Shaughnessy, J.E. Smith, D. Tadesse, L. Washburn, and K.R. Weis (2017). An evaluation of ISFET sensors for coastal pH monitoring applications. Regional Studies in Marine Science, 12: 11-18. http://dx.doi.org/10.1016/j.rsma.2017.02.008

McClain, C.R., J.P. Barry, and T.J. Webb (2017). Increased Energy Differentially Increases Richness and Abundance of Optimal Body Sizes in Deep-Sea Wood-Falls. Ecology. http://eprints.whiterose.ac.uk/121820/

Martini, S. and S.H.D. Haddock (2017). Quantification of bioluminescence from the surface to the deep sea demonstrates its predominance as an ecological trait. Scientific Reports, 7: 1-11. http://dx.doi.org/10.1038/srep45750

Manning, C.C., R.H.R. Stanley, D.P. Nicholson, J.M. Smith, J.T. Pennington, M.R. Fewings, M.E. Squibb, and F.P. Chavez (2017). Impact of recently upwelled water on productivity investigated using in situ and incubation-based methods in Monterey Bay. Journal of Geophysical Research-Oceans, 122: 1901-1926. http://dx.doi.org/10.1002/2016JC012306

Maier, K.L., C. Paull, K., D.S. Brothers, D.W. Caress, M. McGann, E.M. Lundsten, A. Anderson, and R. Gwiazda (2017). Investigation of late Pleistocene and Holocene activity in the San Gregorio Fault Zone on the continental slope north of Monterey Canyon, offshore Central California Bulletin of the Seismological Society of America. http://dx.doi.org/10.1785/0120160261

Lundsten, L., H.M. Reiswig, and W.C. Austin (2017). Three new species of Cladorhiza (Demospongiae, Poecilosclerida, Cladorhizidae) from the Northeast Pacific Ocean. Zootaxa, 4317: 247. http://dx.doi.org/10.11646/zootaxa.4317.2.3

Lord, J.P., J.P. Barry, and D. Graves (2017). Impact of climate change on direct and indirect species interactions. Marine Ecology Progress Series, 571: 1-11. http://dx.doi.org/10.3354/meps12148

Lord, J.P. and J.P. Barry (2017). Juvenile mussel and abalone predation by the lined shore crab Pachygrapsus crassipes. Journal of Shellfish Research, 36: 209-213. http://dx.doi.org/10.2983/035.036.0122

Lewis, A. and G.I. Matsumoto (2017). Science Educator Professional Development: Big Data and Inquiry Learning in Optimizing STEM Education with Advanced ICTs and Simulations: Tools and Solutions for Inquiry-Based STEM Learning. In: Optimizing STEM education with advanced ICTs and Simulations, edited by I. Levin and D. Tsybulsky. IGI Global,Hershey, PA, 219-244.

Kemp, M. and B.Y. Raanan (2017). Actuator Fault Detection for Autonomous Underwater Vehicles. In: PHM Society Conference, St. Petersburg, FL.

Katija, K., R.E. Sherlock, A.D. Sherman, and B. Robison (2017). New technology reveals the role of giant larvaceans in oceanic carbon cycling. Science Advances, 3: e1602374. http://dx.doi.org/10.1126/sciadv.1602374

Johnson, K.S., J.N. Plant, J.P. Dunne, L.D. Talley, and J.L. Sarmiento (2017). Annual nitrate drawdown observed by SOCCOM profiling floats and the relationship to annual net community production. Journal of Geophysical Research: Oceans, 122: 6668-6683. http://dx.doi.org/10.1002/2017JC012839

Johnson, K.S., J.N. Plant, L.J. Coletti, H.W. Jannasch, C.M. Sakamoto, S.C. Riser, D.D. Swift, N.L. Williams, E. Boss, N. Haëntjens, L.D. Talley, and J.L. Sarmiento (2017). Biogeochemical sensor performance in the SOCCOM profiling float array. Journal of Geophysical Research: Oceans, 122: 6416-6436. http://dx.doi.org/10.1002/2017JC012838

Jayne, S., D. Roemmich, N. Zilberman, S. Riser, K. Johnson, G. Johnson, and S. Piotrowicz (2017). The Argo Program: Present and Future. Oceanography, 30: 18-28. http://dx.doi.org/10.5670/oceanog.2017.213

Hughes, B.B., R. Beas-Luna, A.K. Barner, K. Brewitt, D.R. Brumbaugh, E.B. Cerny-Chipman, S.L. Close, K.E. Coblentz, K.L. de Nesnera, S.T. Drobnitch, J.D. Figurski, B. Focht, M. Friedman, J. Freiwald, K.K. Heady, W.N. Heady, A. Hettinger, A. Johnson, K.A. Karr, B. Mahoney, M.M. Moritsch, A.-M.K. Osterback, J. Reimer, J. Robinson, T. Rohrer, J.M. Rose, M. Sabal, L.M. Segui, C. Shen, J. Sullivan, R. Zuercher, P.T. Raimondi, B.A. Menge, K. Grorud-Colvert, M. Novak, and M.H. Carr (2017). Long-term studies contribute disproportionately to ecology and policy. BioScience, 67: 271-281. http://dx.doi.org/10.1093/biosci/biw185

Hoving, H.J.T. and B.H. Robison (2017). The pace of life in deep-dwelling squids. Deep Sea Research Part I: Oceanographic Research Papers. http://dx.doi.org/10.1016/j.dsr.2017.05.005

Hoving, H.J. and S.H. Haddock (2017). The giant deep-sea octopus Haliphron atlanticus forages on gelatinous fauna. Scientific Reports, 7. http://dx.doi.org/10.1038/srep44952

Harvey, J.B.J., S.B. Johnson, J.L. Fisher, W.T. Peterson, and R.C. Vrijenhoek (2017). Comparison of morphological and next generation DNA sequencing methods for assessing zooplankton assemblages. Journal of Experimental Marine Biology and Ecology, 487: 113-126. http://dx.doi.org/10.1016/j.jembe.2016.12.002

Hamilton, S.L., C.A. Logan, H.W. Fennie, S.M. Sogard, J.P. Barry, A.D. Makukhov, L.R. Tobosa, K. Boyer, C.F. Lovera, and G. Bernardi (2017). Species-specific responses of juvenile rockfish to elevated pCO2: From behavior to genomics. PLoS ONE, 12: e0169670. http://dx.doi.org/10.1371/journal.pone.0169670

Goffredi, S.K., S.B. Johnson, V. Tunnicliffe, D. Caress, D. Clague, E. Escobar, L. Lundsten, J.B. Paduan, G. Rouse, D.L. Salcedo, L.A. Soto, R. Spelz-Madero, R. Zierenberg, and R. Vrijenhoek (2017). Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity. Proceedings of the Royal Society B, 284. http://dx.doi.org/10.1098/rspb.2017.0817

Francis, W.R., L.M. Christianson, and S.H.D. Haddock (2017). Symplectin evolved from multiple duplications in bioluminescent squid. PeerJ, 5: e3633. http://dx.doi.org/10.7717/peerj.3633

Fischer, A.M., J.P. Ryan, and E.V. Rienecker (2017). Fine scale mapping of the structure and composition of the Elkhorn Slough (California, USA) tidal plume. Estuarine, Coastal and Shelf Science, 184: 10-20. http://dx.doi.org/10.1016/j.ecss.2016.10.035

Fassbender, A.J., C.L. Sabine, and H.I. Palevsky (2017). Nonuniform ocean acidification and attenuation of the ocean carbon sink. Geophysical Research Letters, 44: 8404-8413. http://dx.doi.org/10.1002/2017GL074389

Fassbender, A.J., C.L. Sabine, M.F. Cronin, and A.J. Sutton (2017). Mixed layer carbon cycling at the Kuroshio Extension Observatory. Global Biogeochemical Cycles, 31: 272-288. http://doi.org/10.1002/2016GB005547

Fassbender, A.J., H.I. Palevsky, T.R. Martz, A.E. Ingalls, M. Gledhill, S.E. Fawcett, J.A. Brandes, and L.I. Aluwihare (2017). Perspectives on Chemical Oceanography in the 21st century: Participants of the COME ABOARD Meeting examine aspects of the field in the context of 40years of DISCO. Marine Chemistry. https://doi.org/10.1016/j.marchem.2017.09.002

Fassbender, A.J., S.R. Alin, R.A. Feely, A.J. Sutton, J.A. Newton, and R.H. Byrne (2017). Estimating Total Alkalinity in the Washington State Coastal Zone: Complexities and Surprising Utility for Ocean Acidification Research. Estuaries and Coasts, 40: 404-418. http://doi.org/10.1007/s12237-016-0168-z

Duffy, L.M., P. Kuhnert, H.R. Pethybridge, J.W. Young, R.J. Olson, J.M. Logan, N. Goñi, E. Romanov, V. Allain, M. Staudinger, M. Abecassis, C.A. Choy, A.J. Hobday, M. Simier, F. Galván-Magaña, M. Potier, and F. Ménard (2017). Global trophic ecology of yellowfin, bigeye, and albacore tunas: understanding predation on micronekton communities at ocean-basin scales. Deep Sea Research Part II Topical Studies in Oceanography. http://dx.doi.org/10.1016/j.dsr2.2017.03.003

Cuvelier, M.L., J. Guo, A.C. Ortiz, M.J. van Baren, M.A. Tariq, F. Partensky, and A.Z. Worden (2017). Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress. PLoS ONE, 12: e0172135. http://dx.doi.org/10.1371/journal.pone.0172135

Covault, J.A., S. Kostic, C.K. Paull, Z. Sylvester, and A. Fildani (2017). Cyclic steps and related supercritical bedforms: Building blocks of submarine fans and canyon-channel systems, Western North America. Marine Geology. http://dx.doi.org/10.1016/j.margeo.2016.12.009

Conrad, T., J.R. Hein, A. Paytan, and D.A. Clague (2017). Formation of Fe-Mn crusts within a continental margin environment. Ore Geology Reviews, 87: 25-40. http://dx.doi.org/10.1016/j.oregeorev.2016.09.010

Clayton, S., Y.-C. Lin, M.J. Follows, and A.Z. Worden (2017). Co-existence of distinct Ostreococcus ecotypes at an oceanic front. Limnology and Oceanography, 62: 75-88. http://dx.doi.org/10.1002/lno.10373

Clague, D.A., J.B. Paduan, D.W. Caress, W.W. Chadwick Jr., M. Le Saout, B. Dreyer, and R.A. Portner (2017). High-resolution AUV mapping and targeted ROV observations of three historical lava flows at Axial Seamount. Oceanography, 30. http://doi.org/10.5670/oceanog.2017.426

Choy, C.A., S.H.D. Haddock, and B.H. Robison (2017). Deep pelagic food web structure as revealed by in situ feeding observations. Proc Biol Sci, 284. http://doi.org/10.1098/rspb.2017.2116 https://www.ncbi.nlm.nih.gov/pubmed/29212727

Choi, C.J., C. Bachy, G.S. Jaeger, C. Poirier, L. Sudek, V.V.S.S. Sarma, A. Mahadevan, S.J. Giovannoni, and A.Z. Worden (2017). Newly discovered deep-branching marine plastid lineages are numerically rare but globally distributed. Current Biology, 27: R15-R16. http://dx.doi.org/10.1016/j.cub.2016.11.032

Chavez, F.P., J. Sevadjian, C. Wahl, J. Friederich, and G.E. Friederich (2017). Measurements of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II: Topical Studies in Oceanography. http://dx.doi.org/10.1016/j.dsr2.2017.01.001

Caron, D.A., A.G. Gellene, J. Smith, E.L. Seubert, V. Campbell, G.S. Sukhatme, B. Seegers, B.H. Jones, A.A.Y. Lie, R. Terrado, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C. Scholin, M. Mengel, and G. Robertson (2017). Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science, 186: 223-236. http://dx.doi.org/10.1016/j.ecss.2015.09.013

Burton, E.J., L.A. Kuhnz, A.P. DeVogelaere, and J.P. Barry (2017). Sur Ridge Field Guide: Monterey Bay National Marine Sanctuary. Marine Sanctuaries Conservation Series, Office of National Marine Sanctuaries:122. https://sanctuaries.noaa.gov/science/conservation/sur-ridge-field-guide-monterey-bay-national-mairne-sanctuary.html.

Burridge, A.K., C. Hornlein, A.W. Janssen, M. Hughes, S.L. Bush, F. Marletaz, R. Gasca, A.C. Pierrot-Bults, E. Michel, J.A. Todd, J.R. Young, K.J. Osborn, S.B.J. Menken, and K. Peijnenburg (2017). Time-calibrated molecular phylogeny of pteropods. PLoS ONE, 12: e0177325. http://dx.doi.org/10.1371/journal.pone.0177325

Briggs, E.M., E. Sandoval, S. Erten, Y. Takeshita, A.C. Kummel, and T.R. Martz (2017). Solid State Sensor for Simultaneous Measurement of Total Alkalinity and pH of Seawater. ACS Sensors, 2: 1302-1309. http://doi.org/10.1021/acssensors.7b00305

Brewer, P.G., E.T. Peltzer, P.M. Walz, and M. Wojciechowicz (2017). The speciation of water in sea water and in gelatinous marine animals. Marine Chemistry, 195: 94-104. https://doi.org/10.1016/j.marchem.2017.05.002

Brewer, P.G. and E.T. Peltzer (2017). Depth perception: the need to report ocean biogeochemical rates as functions of temperature, not depth. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 375. http://rsta.royalsocietypublishing.org/content/375/2102/20160319.abstract

Breusing, C., R.C. Vrijenhoek, and T.B. Reusch (2017). Widespread introgression in deep-sea hydrothermal vent mussels. BMC Evolutionary Biology, 17: 10. http://dx.doi.org/10.1186/s12862-016-0862-2

Benoit-Bird, K.J., M.A. Moline, and B. Southall (2017). Prey in oceanic sound scattering layers organize to get a little help from their friends. Limnology and Oceanography, 62: 2788-2798. http://doi.org/10.1002/lno.10606

Andruszkiewicz, E.A., H.A. Starks, F.P. Chavez, L.M. Sassoubre, B.A. Block, and A.B. Boehm (2017). Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding. PLoS ONE, 12: e0176343. http://dx.doi.org/10.1371/journal.pone.0176343

2016

Ziccarelli, L., R. Dellor, R. Johnson, H. Schmitz, T. O’Reilly, and F. Chavez (2016). A novel method of obtaining near real-time observations of phytoplankton from a mobile autonomous platform. In: Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Monterey, California, 1-5.

Zhang, Y., B. Kieft, C. Rueda, T. O’Reilly, J. Ryan, T. Maughan, C. Wahl, and F. Chavez (2016). Autonomous front tracking by a Wave Glider. In: Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Monterey, California.

Zhang, Y., J.G. Bellingham, J.P. Ryan, B. Kieft, and M.J. Stanway (2016). Autonomous four-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle. Journal of Field Robotics, 33: 67-81. http://dx.doi.org/10.1002/rob.21617

Worden, A.Z. and S. Wilken (2016). A plankton bloom shifts as the ocean warms. Science, 354: 287-288. http://dx.doi.org/10.1126/science.aaj1751

Williams, N.L., L.W. Juranek, K.S. Johnson, R.A. Feely, S.C. Riser, L.D. Talley, J.L. Russell, J.L. Sarmiento, and R. Wanninkhof (2016). Empirical algorithms to estimate water column pH in the Southern Ocean. Geophysical Research Letters, 43: 3415-3422. http://dx.doi.org/10.1002/2016GL068539

Waltman, P.H., J. Guo, E.N. Reistetter, S. Purvine, C.K. Ansong, M.J. van Baren, C.H. Wong, C.L. Wei, R.D. Smith, S.J. Callister, J.M. Stuart, and A.Z. Worden (2016). Identifying aspects of the post-transcriptional program governing the proteome of the green alga Micromonas pusilla. PLoS ONE, 11: e0155839. http://dx.doi.org/10.1371/journal.pone.0155839

van Baren, M.J., C. Bachy, E.N. Reistetter, S.O. Purvine, J. Grimwood, S. Sudek, H. Yu, C. Poirier, T.J. Deerinck, A. Kuo, I.V. Grigoriev, C.-H. Wong, R.D. Smith, S.J. Callister, C.-L. Wei, J. Schmutz, and A.Z. Worden (2016). Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics, 17: 1-22. http://dx.doi.org/10.1186/s12864-016-2585-6

Thys, T., J.P. Ryan, K.C. Weng, M. Erdmann, and J. Tresnati (2016). Tracking a marine ecotourism star: Movements of the short ocean sunfish Mola ramsayi in Nusa Penida, Bali, Indonesia. Journal of Marine Biology, 3: 1-6. http://dx.doi.org/10.1155/2016/8750193

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Breusing, C., A. Biastoch, A. Drews, A. Metaxas, D. Jollivet, R.C. Vrijenhoek, T. Bayer, F. Melzner, L. Sayavedra, J.M. Petersen, N. Dubilier, M.B. Schilhabel, P. Rosenstiel, and T.B. Reusch (2016). Biophysical and population genetic models predict the presence of “phantom” stepping stones connecting Mid-Atlantic Ridge vent ecosystems. Current Biology, 26: 2257-2267. http://dx.doi.org/10.1016/j.cub.2016.06.062

Branham, C.W., D. Murphy, K. Johnson, and H. Jannasch (2016). Optimization of a robust and reliable ISFET sensor for measuring pH in the deep ocean. In: Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Monterey, California.

Bowers, H.A., R. Marin, III, J.M. Birch, C.A. Scholin, and G.J. Doucette (2016). Recovery and identification of Pseudo-nitzschia (Bacillariophyceae) frustules from natural samples acquired using the environmental sample processor. Journal of Phycology, 52: 135-140. http://dx.doi.org/10.1111/jpy.12369

Biogeochemical-Argo Planning Group (2016). The scientific rationale, design and implementation plan for a biogeochemical-Argo float array.

Benoit-Bird, K.J., B.L. Southall, and M.A. Moline (2016). Predator-guided sampling reveals biotic structure in the bathypelagic. Proceedings of the Royal Society B, 283: 20152457. http://dx.doi.org/10.1098/rspb.2015.2457

Benoit-Bird, K.J. and G.L. Lawson (2016). Ecological insights from pelagic systems acquired using active acoustic techniques. Annual Reviews of Marine Science, 8: 463-490. http://dx.doi.org/10.1146/annurev-marine-122414-034001

Barry, J.P., J.R. Taylor, L.A. Kuhnz, and A.P. De Vogelaere (2016). Symbiosis between the holothurian Scotoplanes sp. A and the lithodid crab Neolithodes diomedeae on a featureless bathyal sediment plain. Marine Ecology, 38: e12396. http://dx.doi.org/10.1111/maec.12396

Aoyama, M., M. Abad, C. Anstey, M. Ashraf P, A. Bakir, S. Becker, S. Bell, E. Berdalet, M. Blum, R. Briggs, F. Caradec, T. Cariou, M. Church, L. Coppola, M. Crump, S. Curless, M. Dai, A. Daniel, C. Davis, E. de Santis Braga, M.E. Solis, L. Ekern, D. Faber, T. Fraser, K. Gundersen, S. Jacobsen, M. Knockaert, T. Komada, M. Kralj, R. Kramer, N. Kress, S. Lainela, J. Ledesma, X. Li, J.-H. Lim, M. Lohmann, C. Lonborg, K.-U. Ludwichowski, C. Mahaffey, F. Malien, F. Margiotta, T. McCormack, I. Murillo, H. Nail, G. Nausch, S. Olafsdottir, J. van Ooijen, R. Paranhos, C. Payne, O. Pierre-Duplessix, G. Prove, E. Rabiller, P. Raimbault, L. Reed, C. Rees, T. Rho, R. Roman, E.M.S. Woodward, J. Sun, B. Szymczycha, S. Takatani, A. Taylor, P. Thamer, S. Torres-Valdes, K. Trahanovsky, H. Waldron, P. Walsham, L. Wang, T. Wang, L. White, T. Yoshimura, and J.-Z. Zhang (2016). IOCCP-JAMSTEC 2015 Inter-laboratory Calibration Exercise of a Certified Reference Material for Nutrients in Seawater. International Ocean Carbon Coordination Project (IOCCP) Report Number 1/2016, Japan Agency for Marine-Earth Science and Technology:176.

Anderson, C.R., R.M. Kudela, M. Kahru, Y. Chao, L.K. Rosenfeld, F.L. Bahr, D.M. Anderson, and T.A. Norris (2016). Initial skill assessment of the California Harmful Algae Risk Mapping (C-HARM) system. Harmful Algae, 59: 1-18. http://dx.doi.org/10.1016/j.hal.2016.08.006

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