MBARI Publications

2018

Albright, R., Takeshita, Y., Koweek, D.A., Ninokawa, A., Wolfe, K., Rivlin, T., Nebuchina, Y., Young, J., Caldeira, K, (2018). Carbon dioxide addition to coral reef waters suppresses net community calcification. Nature, 555: 516-519. http://doi.org/10.1038/nature25968
Arranz, P., Benoit-Bird, K.J., Southall, B.L., Calambokidis, J., Friedlander, A.S., Tyack, P.L., (2018). Risso's dolphins plan foraging dives. Journal of Experimental Biology : . https://doi.org/10.1242/jeb.165209
Clague, D.A., Caress, D.W., Dreyer, B.M., Lundsten, L., Paduan, J.B., Portner, R.A., Spelz-Madero, R., Bowles, J.A., Castillo, P.R., Guardado-France, R., Le Saout, M., Martin, J.F., Santa Rosa-del Rio, M.A., Zierenber, R.A., (2018). Geology of the Alarcon Rise, Southern Gulf of California. Geochemistry Geophysics Geosystems, 19: 807-837. http://doi.org/10.1002/2017GC007348
Dornelas, M., Antao, L.H., Moyes, E., Bates, A.E., Magurran, A.E., Adam, D., Akhmetzhanova, A.A., Appeltans, W., Arcos, J.M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A.H., Barbosa, M., Barreto, T.E., Bassler, C., Bellgrove, A., Belmaker, J., Benedetti-Checchi, L., Bett, B.J., Bjorkman, A.D., Blazewicz, M., Blowes, S.A., Bloch, C.P., Bonebrake, T.C., Boyd, S., Brandford, M., Brooks, A.J., Brown, J.H., Bruelheide, H., Budy, P., Carvalho, F., Castaneda-Moya, E., Chen, C.A., Chamblee, J.F., Chase, T.J., Collier, L.S., Collinge, S.K., Condit, R., Cooper, E.J., Cornelissen, J.H.C., Cotano, U., Crow, S.K., Damasceno, G., Davies, C.H., Davis, R.A., Day, F.P., Degraer, S., Doherty, T.S., Dunn, T.E., Durigan, G., Duffy, J.E., Edelist, D., Edgar, G.J., Elahi, R., Elmendorf, S.C., Enemar, A., Ernest, S.K.M., Escribano, R., Estiarte, M., Evans, B.S., Fan, T.Y., Farah, F.T., Fernandes, L.L., Farneda, F.Z., Fidelis, A., Fitt, R., Fozaa, A.M., Franco, G.A.D.C., Frank, G.E., Fraser, W.R., Garcia, H., Gatti, R.C., Givan, O., Gorgone-Barbosa, E., Gould, W.A., Gries, C., Grossman, G.D., Gutierrez, J.R., Hale, S., Harmon, M.E., Harte, J., Haskins, G., Henshaw, D.L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Hoey, G.V., Hofgaard, A., Holeck, K., Hollister, R.D., Holmes, R., Hoogenboom, M., Hsieh, C., Hubbell, S.P., Huettmann, F., Huffard, C.L., Hurlbert, A.H., Ivanauskas, N.M., Janik, D., Jandt, U., Jazdzewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F.A.M., Kang, J., Kartawijaya, T., Keeley, E.C., Kelt, D.A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C.C., Kortz, A.R., Kral, K., Kuhnz, L.A., Kuo, C.Y., Kushner, D.J., Laguionie-Marchias, C., Lancaster, L.T., Lee, C.M., Lefcheck, J.S., Levesque, E., Lightfoot, D., Lloret, F., Lloyd, J.D., Lopez-Baucells, A., Louzano, M., Madin, J.S., Magnusson, B., Malamud, S., Matthews, I., McFarland, K.P., McGill, B., MvKnight, D., McLarney, W.O., Meador, J., Meserve, P.L., Metcalfe, D.J., Meyer, C.F.J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Moreira, C.M., Miller, J., Murphy, G., Myers-Smith, I.H., Myster, R.W., Naumov, A., Neat, F., Nelson, J.A., Nelson, M.P., Newton, S.F., Norden, N., Oliver, J.C., Olsen, E.M., Onipchenko, V.G., Pabis, K., Pabst, R.J., Paquette, A., Pardede, S., Paterson, D.M., Pelissier, R., Penuelas, J., Perez-Matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H.H.T., Priscu, J.C., Provoost, P., Prudic, K.L., Pulliainen, E., Ramesh, B.R., Ramos, O.M., Rassweiler, A., Rebelo, J.E., Reed, D.C., Reich, P.B., Remillard, S.M., Richardson, A.J., van Rijn, I., Rocha, R., Rivera-Monroy, V.H., Rixen, C., Robison, K.P., Rodrigues, R.R., Rossa-Feres, D.C., Rudstam, L., Ruhl, H., Ruz, C.S., Sampaio, E.M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F.A.M., Savassi-Coutinho, A.P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K.T., Shaver, G.R., Sherman, S., Sherry, T.W., Sicinski, J., Sievers, C., da Silva, A.C., da Silva, F.R., Silveira, F.L., Slingsby, J., Smart, T., Snell, S.J., Soudzilovskaia, N.A., Souza, G.B.G., Souza, F.M., Souza, V.C., Stallings, C.D., Stanforth, R., Stanley, E.H., Sterza, J.M., Stevens, M., Stuart-Smith, R., Suarez, J.M., Supp, S., Tamashiro, J.Y., Tarigan, S., Thiede, G.P., Thorn, S., Tolvanen, A., Toniato, M.T.Z., Totland, O., Twilley, R.R., Vaitkus, G., Valdivia, N., Ballejo, M.I., Valone, T.J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H.M., Vianna, M., Vieira, R.P., Vrska, T., Vu, C.Q., Vu, L.V., Waide, R.B., Waldock, C., Watts, D., Webb, S., Wesotowski, T., White, E.P., Widdicombe, C.E., Wilgers, D., Williams, R., Williams, S.B., Williamson, M., Willig, M.R., Willis, T.J., Wipf, S., Woods, K.D., Woehler, E.J., Zawada, K., Zettler, M.L., (2018). BioTIME - A time-series database for the Anthropocene. Global Ecology and Biogeography : 760-786. http://doi.org/10.1111/geb.12729
Dunlop, K.M., Jarvis, T., Benoit-Bird, K.J., Waluk, C.M., Caress, D.W., Thomas, H., Smith Jr., K.L., (2018). Detection and characterization of deep-sea benthopelagic animals from an autonomous underwater vehicle with a multibeam echosounder: a proof of concept and description of data-processing methods. Deep Sea Research 1, 134: 64-69. https://doi.org/10.1016/j.dsr.2018.01.006
Fassbender, A.J., Alin, S.R., Feely, R.A., Sutton, A.J., Newton, J.A., Krembs, C., Bos, J., Keyzers, M., Devol, A., Ruef, W., Pelletier, G., (2018). Seasonal carbonate chemistry variability in marine surface waters of the US Pacific Northwest. Earth System Sicence Data, 10: 1367-1401. https://doi.org/10.5194/essd-10-1367-2018
Feely, Richard A., Okazaki, Remy R., Cai, Wei-Jun, Bednaršek, Nina, Alin, Simone R., Byrne, Robert H., Fassbender, Andrea, (2018). The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico. Continental Shelf Research, 152: 50-60. https://doi.org/10.1016/j.csr.2017.11.002
Jones, M.R., Soule, S.A., Gonnermann, H.M., Le Roux, V., Clague, D.A., (2018). Magma ascent and lava flow emplacement rates during the 2011 Axial Seamount eruption based on CO2 degassing. Earth and Planetary Science Letters, 494: 32-41. https://doi.org/10.1016/j.epsl.2018.04.044
Lodes, K., Matsumoto, G.I., Magnusson, J., (2018). Education And Research: Testing Hypotheses (EARTH). Marine Technology Society Journal, 52: .
Munro, C., Siebert, S., Zapata, F., Howison, M., Damian-Serrano, A., Church, S. H., Goetz, F.E., Pugh, P. R., Haddock, S.H.D., Dunn, C. W., (2018). Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution. Molecular Phylogenetics and Evolution, 127: 823-833. https://doi.org/10.1016/j.ympev.2018.06.030
Nielsen, K., Stachowicz, J., Carter, H., Boyer, K., Bracken, M., Chan, F., Chavez, F., Hovel, K., Kent, M., Nickols, K., Ruesink, J., Tyburczy, J., Wheeler, S., (2018). Emerging understanding of the potential role of seagrass and kelp as an ocean acidification management tool in California. : .
Rouse, Greg W., Goffredi, Shana K., Johnson, Shannon B., Vrijenhoek, Robert C., (2018). An inordinate fondness for Osedax (Siboglinidae: Annelida): Fourteen new species of bone worms from California. Zootaxa, 4377: 451. http://doi.org/10.11646/zootaxa.4377.4.1
Sanamyan, K.E., Sanamyan, N.P., Kuhnz, L., (2018). A new Culeolus species (Ascidiacea) from the NE Pacific, California. Zootaxa, 4420: 270-278. https://doi.org/10.11646/zootaxa.4420.2.8

2017

Andruszkiewicz, E. A., Starks, H. A., Chavez, F. P., Sassoubre, L. M., Block, B. A., Boehm, A. B., (2017). Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding. PLoS One, 12: e0176343. http://dx.doi.org/10.1371/journal.pone.0176343
Barry, J.P., Graves, D., Kecy, C., Lovera, C., Okuda, C., Boch, C.A., Lord, J.P., (2017). Chasing the future: How will ocean change affect marine life?. Oceanography, 30: 60-71. https://doi.org/10.5670/oceanog.2017.424
Webb, Thomas J., Barry, James P., McClain, Craig R., (2017). Abundance-occupancy relationships in deep sea wood fall communities. Ecography : . http://dx.doi.org/10.1111/ecog.02618
Williams, N. L., Juranek, L. W., Feely, R. A., Johnson, K. S., Sarmiento, J. L., Talley, L. D., Dickson, A. G., Gray, A. R., Wanninkhof, R., Russell, J. L., Riser, S. C., Takeshita, Y., (2017). Calculating surface ocean pCO2 from biogeochemical Argo floats equipped with pH: An uncertainty analysis. Global Biogeochemical Cycles, 31: 591-604. http://dx.doi.org/10.1002/2016GB005541
Zhang, Yanwu, Kieft, Brian, Stanway, M. Jordan, McEwen, Robert S., Hobson, Brett W., Bellingham, James G., Ryan, John P., O'Reilly, Thomas C., Raanan, Ben Y., Messié, Monique, Smith, Jason M., Chavez, Francisco P., (2017). Isotherm tracking by an autonomous underwater vehicle in drift mode. IEEE Journal of Oceanic Engineering , 42: 808-817. http://dx.doi.org/10.1109/JOE.2016.2625058
Thomas, K. N., Robison, B. H., Johnsen, S., (2017). Two eyes for two purposes: in situ evidence for asymmetric vision in the cockeyed squids Histioteuthis heteropsis and Stigmatoteuthis dofleini. Philosophical Transactions B, 372: 1-9. http://dx.doi.org/10.1098/rstb.2016.0069
Thistle, David, Sedlacek, Linda, Carman, Kevin R., Barry, James P., (2017). Influence of habitat heterogeneity on the community structure of deep-sea harpacticoid communities from a canyon and an escarpment site on the continental rise off California. Deep Sea Research Part I: Oceanographic Research Papers : . http://dx.doi.org/10.1016/j.dsr.2017.03.005
Smith Jr., K.L., Sherman, A.D., McGill, P.R., Henthorn, R.G., Ferreira, J., Huffard, C.L., (2017). Evolution of monitoring an abyssal time-​series station in the northeast Pacific over 28 years. Oceanography, 30: 72-81. https://doi.org/10.5670/oceanog.2017.425
Straehler-Pohl, I., Matsumoto, G.I., Acevendo, M., (2017). Recognition of the Californian cubozoan population as a new species – Carybdea confusa n. sp. (Cnidaria, Cubozoa, Carybdeida). Plankton and Benthos Research, 12: 129-138. http://doi.org/10.3800/pbr.12.129
Sutton, Tracey T., Clark, Malcolm R. az, Dunn, Daniel C., Halpin, Patrick N., Rogers, Alex D., Guinotte, John, Bograd, Steven J., Angel, Martin V., Perez, Jose Angel A., Wishner, Karen, Haedrich, Richard L., Lindsay, Dhugal J., Drazen, Jeffrey C., Vereshchaka, Alexander, Piatkowski, Uwe, Morato, Telmo, Błachowiak-Samołyk, Katarzyna, Robison, Bruce H., Gjerde, Kristina M., Pierrot-Bults, Annelies, Bernal, Patricio, Reygondeau, Gabriel, Heino, Mikko, (2017). A global biogeographic classification of the mesopelagic zone. Deep Sea Research Part I: Oceanographic Research Papers : . http://dx.doi.org/10.1016/j.dsr.2017.05.006
Symons, W. O., Sumner, E. J., Paull, C. K., Cartigny, M. J. B., Xu, J. P., Maier, K. L., Lorenson, T. D., Talling, P. J., (2017). A new model for turbidity current behavior based on integration of flow monitoring and precision coring in a submarine canyon. Geology, 45: 367-370. http://dx.doi.org/10.1130/G38764.1
Tagliabue, A., Bowie, A. R., Boyd, P. W., Buck, K. N., Johnson, K. S., Saito, M. A., (2017). The integral role of iron in ocean biogeochemistry. Nature, 543: 51-59. http://dx.doi.org/10.1038/nature21058
Takeshita, Y., (2017). Understanding feedbacks between ocean acidification and coral reef metabolism. Journal of Geophyiscal Research: Oceans, 122: 1639-1642. http://doi.org/10.1002/2017JC012740
Sato, M., Benoit-Bird, K.J., (2017). Spatial variability of deep scattering layers shapes the Bahamian mesopelagic ecosystem. Marine Ecology Progress Series, 580: 69-82. https://doi.org/10.3354/meps12295
Schoening, Timm, Durden, Jennifer, Preuss, Inken, Branzan Albu, Alexandra, Purser, Autun, De Smet, Bart, Dominguez-Carrió, Carlos, Yesson, Chris, de Jonge, Daniëlle, Lindsay, Dhugal, Schulz, Jan, Möller, Klas Ove, Beisiegel, Kolja, Kuhnz, Linda, Hoeberechts, Maia, Piechaud, Nils, Sharuga, Stephanie, Treibitz, Tali, (2017). Report on the Marine Imaging Workshop 2017. Research Ideas and Outcomes, 3: e13820. https://doi.org/10.3897/rio.3.e13820
Scholin, C.A., Birch, J., Jensen, S., Marin III, R., Massion, E., Pargett, D., Preston, C., Roman, B., Ussler III, W., (2017). The quest to develop ecogenomic sensors: A 25-Year history of the Environmental Sample Processor (ESP) as a case study. Oceanography, 30: 100-113. https://doi.org/10.5670/oceanog.2017.427
Sherlock, R. E., Walz, K. R., Schlining, K. L., Robison, B. H., (2017). Morphology, ecology, and molecular biology of a new species of giant larvacean in the eastern North Pacific: Bathochordaeus mcnutti sp. nov.. Marine Biology, 164: 20. http://dx.doi.org/10.1007/s00227-016-3046-0
Sakamoto, Carole M., Johnson, Kenneth S., Coletti, Luke J., Jannasch, Hans W., (2017). Pressure correction for the computation of nitrate concentrations in seawater using an in situ ultraviolet spectrophotometer. Limnology and Oceanography: Methods : . http://dx.doi.org/10.1002/lom3.10209
Sakamoto, C.M., Johnson, K.S., Coletti, L.J., Maurer, T.L., Massion, G., Pennington, J.T., Plant, J.N., Jannasch, H.W., Chavez, F.P., (2017). Hourly in situ nitrate on a coastal mooring: A 15-year record and insights into new production. Oceanography, 30: 114-127. https://doi.org/10.5670/oceanog.2017.428
Sanborn, Kelsey L., Webster, Jody M., Yokoyama, Yusuke, Dutton, Andrea, Braga, Juan C., Clague, David A., Paduan, Jennifer B., Wagner, Daniel, Rooney, John J., Hansen, John R., (2017). New evidence of Hawaiian coral reef drowning in response to meltwater pulse-1A. Quaternary Science Reviews, 175: 60-72. https://doi.org/10.1016/j.quascirev.2017.08.022

2016

Anderson, C. R., Kudela, R. M., Kahru, M., Chao, Y., Rosenfeld, L. K., Bahr, F. L., Anderson, D. M., Norris, T. A., (2016). Initial skill assessment of the California Harmful Algae Risk Mapping (C-HARM) system. Harmful Algae, 59: 1-18. http://dx.doi.org/10.1016/j.hal.2016.08.006
Aoyama, M, Abad, M, Anstey, C, Ashraf P, M, Bakir, A, Becker, S, Bell, S, Berdalet, E., Blum, M, Briggs, R, Caradec, F, Cariou, T., Church, M, Coppola, L, Crump, M, Curless, S, Dai, M., Daniel, A, Davis, C , de Santis Braga, E, Solis, M.E., Ekern, L, Faber, D, Fraser, T, Gundersen, K, Jacobsen, S, Knockaert, M, Komada, T, Kralj, M, Kramer, R., Kress, N, Lainela, S, Ledesma, J., Li, X, Lim, J-H, Lohmann, M, Lonborg, C, Ludwichowski, K-U, Mahaffey, C, Malien, F, Margiotta, F, McCormack, T , Murillo, I, Nail, H, Nausch, G, Olafsdottir, S, van Ooijen, J, Paranhos, R, Payne, C, Pierre-Duplessix, O, Prove, G, Rabiller, E, Raimbault, P, Reed, L, Rees, C, Rho, T, Roman, R, Woodward, E.M.S., Sun, J., Szymczycha, B, Takatani, S, Taylor, A., Thamer, P, Torres-Valdes, S, Trahanovsky, K, Waldron, H, Walsham, P, Wang, L, Wang, T, White, L , Yoshimura, T, Zhang, J-Z, (2016). IOCCP-JAMSTEC 2015 Inter-laboratory Calibration Exercise of a Certified Reference Material for Nutrients in Seawater. International Ocean Carbon Coordination Project (IOCCP) Report Number 1/2016 : 176.
Barker, L.D.L., Kim, S.L., Saenz, B. T., Osborne, D.J., Daly, K.L., (2016). Towable instrumentation for use with a hand-deployed remotely operated vehicle. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : .
Barry, James P., Taylor, Josi R., Kuhnz, Linda A., De Vogelaere, Andrew P., (2016). Symbiosis between the holothurian Scotoplanes sp. A and the lithodid crab Neolithodes diomedeae on a featureless bathyal sediment plain. Marine Ecology, 38: e12396. http://dx.doi.org/10.1111/maec.12396
Benoit-Bird, K.J., Lawson, G.L., (2016). Ecological insights from pelagic systems acquired using active acoustic techniques. Annual Reviews of Marine Science, 8: 463-490. http://dx.doi.org/10.1146/annurev-marine-122414-034001
Benoit-Bird, K. J., Southall, B. L., Moline, M. A., (2016). Predator-guided sampling reveals biotic structure in the bathypelagic. Proceedings of the Royal Society B, 283: 20152457. http://dx.doi.org/10.1098/rspb.2015.2457
Bertram, S, Kitts, C., Azevedo, D, Del Vecchio, G, Hopner, B, Wheat, C. G., Kirkwood, W., (2016). A portable ASV prototype for shallow-water science operations. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : .
Biogeochemical-Argo Planning Grou, (2016). The scientific rationale, design and implementation plan for a biogeochemical-Argo float array. : . http://dx.doi.org/10.13155/46601
Bowers, H. A., Marin, R., III, Birch, J. M., Scholin, C. A., Doucette, G. J., (2016). Recovery and identification of Pseudo-nitzschia (Bacillariophyceae) frustules from natural samples acquired using the environmental sample processor. Journal of Phycology, 52: 135-140. http://dx.doi.org/10.1111/jpy.12369
Branham, C.W., Murphy, D., Johnson, K., Jannasch, H., (2016). Optimization of a robust and reliable ISFET sensor for measuring pH in the deep ocean. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761357
Breusing, C., Biastoch, A., Drews, A., Metaxas, A., Jollivet, D., Vrijenhoek, R. C., Bayer, T., Melzner, F., Sayavedra, L., Petersen, J. M., Dubilier, N., Schilhabel, M. B., Rosenstiel, P., Reusch, T. B., (2016). Biophysical and population genetic models predict the presence of “phantom” stepping stones connecting Mid-Atlantic Ridge vent ecosystems. Current Biology, 26: 2257-2267. http://dx.doi.org/10.1016/j.cub.2016.06.062
Williams, N. L., Juranek, L. W., Johnson, K. S., Feely, R. A., Riser, S. C., Talley, L. D., Russell, J. L., Sarmiento, J. L., Wanninkhof, R., (2016). Empirical algorithms to estimate water column pH in the Southern Ocean. Geophysical Research Letters, 43: 3415-3422. http://dx.doi.org/10.1002/2016GL068539
Worden, A. Z., Wilken, S., (2016). A plankton bloom shifts as the ocean warms. Science, 354: 287-288. http://dx.doi.org/10.1126/science.aaj1751
Zhang, Y., Bellingham, J.G., Ryan, J.P., Kieft, B., Stanway, M. J., (2016). Autonomous four-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle. Journal of Field Robotics, 33: 67-81. http://dx.doi.org/10.1002/rob.21617
Zhang, Y., Kieft, B., Rueda, C., O'Reilly, T., Ryan, J., Maughan, T., Wahl, C., Chavez, F., (2016). Autonomous front tracking by a Wave Glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761070
Ziccarelli, Lisa, Dellor, Roger, Johnson, Richard, Schmitz, Heike, O'Reilly, Tom, Chavez, Francisco, (2016). A novel method of obtaining near real-time observations of phytoplankton from a mobile autonomous platform. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-5. http://dx.doi.org/10.1109/OCEANS.2016.7761230
van Baren, Marijke J., Bachy, Charles, Reistetter, Emily Nahas, Purvine, Samuel O., Grimwood, Jane, Sudek, Sebastian, Yu, Hang, Poirier, Camille, Deerinck, Thomas J., Kuo, Alan, Grigoriev, Igor V., Wong, Chee-Hong, Smith, Richard D., Callister, Stephen J., Wei, Chia-Lin, Schmutz, Jeremy, Worden, Alexandra Z., (2016). Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics, 17: 1-22. http://dx.doi.org/10.1186/s12864-016-2585-6
Waldmann, C., Kier, T.M., Kirkwood, W.S., Meckel, S., (2016). Performance data of a pneumatic variable buoyancy engine for a newly designed underwater glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : . http://dx.doi.org/10.1109/OCEANS.2016.7761225
Waltman, P. H., Guo, J., Reistetter, E. N., Purvine, S., Ansong, C. K., van Baren, M. J., Wong, C. H., Wei, C. L., Smith, R. D., Callister, S. J., Stuart, J. M., Worden, A. Z., (2016). Identifying aspects of the post-transcriptional program governing the proteome of the green alga Micromonas pusilla. PLoS One, 11: e0155839. http://dx.doi.org/10.1371/journal.pone.0155839
Simmons, M. P., Sudek, S., Monier, A., Limardo, A. J., Jimenez, V., Perle, C. R., Elrod, V. A., Pennington, J. T., Worden, A. Z., (2016). Abundance and biogeography of picoprasinophyte ecotypes and other phytoplankton in the Eastern North Pacific Ocean. Applied and Environmental Microbiology, 82: 1693-1705. http://dx.doi.org/10.1128/AEM.02730-15

2015

Zhang, Yanwu, Bellingham, James G., Ryan, John P., Godin, Michael A., (2015). Evolution of a physical and biological front from upwelling to relaxation. Continental Shelf Research, 108: 55-64. http://dx.doi.org/10.1016/j.csr.2015.08.005
Zhang, Y., Kieft, B., McEwen, R., Stanway, M.J., Bellingham, J. , Ryan, J., Hobson, B., Pargett, D., Birch, J., Scholin, C., (2015). Tracking and sampling of a phytoplankton patch by an autonomous underwater vehicle in drifting mode. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-5.
Yamahara, K.M., Demir-Hilton, E., Preston, C.M., Marin, R., 3rd, Pargett, D., Roman, B., Jensen, S., Birch, J.M., Boehm, A.B., Scholin, C.A., (2015). Simultaneous monitoring of faecal indicators and harmful algae using an in-situ autonomous sensor. Letters in Applied Microbiology, 61: 130-138. http://dx.doi.org/10.1111/lam.12432
Young, J.W., Hunt, B.P.V., Cook, T.R., Llopiz, J.K., Hazen, E.L., Pethybridge, H.R., Ceccarelli, D., Lorrain, A., Olson, R.J., Allain, V., Menkes, C., Patterson, T., Nicol, S., Lehodey, P., Kloser, R.J., Arrizabalaga, H., Choy, C.A., (2015). The trophodynamics of marine top predators: Current knowledge, recent advances and challenges. Deep Sea Research Part II: Topical Studies in Oceanography, 113: 170-187. http://dx.doi.org/10.1016/j.dsr2.2014.05.015
Zapata, F., Goetz, F.E., Smith, S.A., Howison, M., Siebert, S., Church, S.H., Sanders, S.M., Ames, C.L., McFadden, C.S., France, S.C., Daly, M., Collins, A.G., Haddock, S.H.D., Dunn, C.W., Cartwright, P., (2015). Phylogenomic analyses support traditional relationships within Cnidaria. PLoS One, 10: e0139068. http://dx.doi.org/10.1371/journal.pone.0139068
Zhang, H., Johnson, S.B., Flores, V.R., Vrijenhoek, R.C., (2015). Intergradation between discrete lineages of Tevnia jerichonana, a deep-sea hydrothermal vent tubeworm. Deep-Sea Research Part II: Topical Studies in Oceanography, 121: 53-61. http://dx.doi.org/10.1016/j.dsr2.2015.04.028
Worden, A.Z., Follows, M.J., Giovannoni, S.J., Wilken, S., Zimmerman, A.E., Keeling, P.J., (2015). Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes. Science, 347: . http://dx.doi.org/10.1126/science.1257594
Xu, Yi, Rose, Kenneth A., Chai, Fei, Chavez, Francisco P., Ayón, Patricia, (2015). Does spatial variation in environmental conditions affect recruitment? A study using a 3-D model of Peruvian anchovy. Progress in Oceanography, 138: 417-430. http://dx.doi.org/10.1016/j.pocean.2015.04.002
Wicksten, M., Kuhnz, L.A., (2015). A swimming deep-sea peneaoid shrimp photographed off California. California Fish and Game, 101: 146-148.
Varaljay, V.A., Robidart, J., Preston, C.M., Gifford, S.M., Durham, B.P., Burns, A.S., Ryan, J.P., Marin, R., 3rd, Kiene, R.P., Zehr, J.P., Scholin, C.A., Ann Moran, M., (2015). Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. ISME Journal, 9: 1692. http://dx.doi.org/10.1038/ismej.2015.94
Wasson, K., Suarez, B., Akhavan, A., McCarthy, E., Kildow, J., Johnson, K.S., Fountain, M.C., Woolfolk, A., Silberstein, M., Pendleton, L., Feliz, D., (2015). Lessons learned from an ecosystem-based management approach to restoration of a California estuary. Marine Policy, 58: 60-70. http://dx.doi.org/10.1016/j.marpol.2015.04.002
Thompson, D., Caress, D., Thomas, H., Conlin, D., (2015). MBARI mapping AUV operations in the Gulf of California 2015. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference : 1-7.
Thys, Tierney M., Ryan, John P., Dewar, Heidi, Perle, Christopher R., Lyons, Kady, O'Sullivan, John, Farwell, Charles, Howard, Michael J., Weng, Kevin C., Lavaniegos, Bertha E., Gaxiola-Castro, Gilberto, Miranda Bojorquez, Luis Erasmo, Hazen, Elliott L., Bograd, Steven J., (2015). Ecology of the ocean sunfish, Mola mola, in the southern California Current System. Journal of Experimental Marine Biology and Ecology, 471: 64-76. http://dx.doi.org/10.1016/j.jembe.2015.05.005
Trueblood, L.A., Zylinski, S., Seibel, B.A., Robison, B.H., (2015). An ethogram of the Humboldt squid Dosidicus gigas Orbigny (1835) as observed from remotely operated vehicles. Behaviour, 152: 1911-1932. http://dx.doi.org/10.1163/1568539x-00003324
Tubau, X., Paull, C.K., Lastras, G., Caress, D.W., Canals, M., Lundsten, E., Anderson, K., Gwiazda, R., Amblas, D., (2015). Submarine canyons of Santa Monica Bay, Southern California: Variability in morphology and sedimentary processes. Marine Geology, 365: 61-79. http://dx.doi.org/10.1016/j.margeo.2015.04.004
Simmons, M.P., Bachy, C., Sudek, S., van Baren, M.J., Sudek, L., Ares, M., Jr., Worden, A.Z., (2015). Intron invasions trace algal speciation and reveal nearly identical Arctic and Antarctic Micromonas populations. Mol Biol Evol, 32: 2219-2235. http://dx.doi.org/10.1093/molbev/msv122
Smith, J.M., Damashek, J., Chavez, F.P., Francis, C.A., (2015). Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean. Limnology and Oceanography, 62: 596-609. http://dx.doi.org/10.1002/lno.10235
Smith Jr, K., Messié, Monique, Sherman, Alana, Huffard, Christine, Hobson, Brett, Ruhl, Henry, Boetius, Antje, (2015). Navigating the uncertain future of global oceanic time series. EOS, 96: . http://dx.doi.org/10.1029/2015eo038095
Siebert, S., Goetz, F.E., Church, S.H., Bhattacharyya, P., Zapata, F., Haddock, S.H.D., Dunn, C.W., (2015). Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones. Evodevo, 6: 22. http://dx.doi.org/10.1186/s13227-015-0018-2
Ševčíková, T., Horák, A., Klimeš , V., Zbránková, V., Demir-Hilton, E., Sudek, S., Jenkins, J., Schmutz, J., Přibyl , P., Fousek, J., Vlček , C., Lang, B. F., Oborník, M., Worden, A.Z., Eliáš, M., (2015). Updating algal evolutionary relationships through plastid genome sequencing: Did alveolate plastids emerge through endosymbiosis of an ochrophyte?. Scientific Reports, 5: . http://dx.doi.org/10.1038/srep10134