Recent BOG publications

Kavanaugh, M. T., Oliver, M. J., Chavez, F. P., Letelier, R. M., Muller-Karger, F. E. & Doney, S. C. (2016) Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation. ICES Journal of Marine Science.

Kroeker, K. J., Sanford, E., Rose, J. M., Blanchette, C. A., Chan, F., Chavez, F. P., Gaylord, B., Helmuth, B., Hill, T. M., Hofmann, G. E., McManus, M. A., Menge, B. A., Nielsen, K. J., Raimondi, P. T., Russell, A. D. & Washburn, L. (2016) Interacting environmental mosaics drive geographic variation in mussel performance and species interactions. Ecology Letters.

Radenac, M.-H., Léger, F., Messié, M., Dutrieux, P., Menkes, C. & Eldin, G. (2016) Wind-driven changes of surface current, temperature, and chlorophyll observed by satellites north of New Guinea. Journal Geophysical Research: Oceans, 121), 2231-2252.

Aylward, F. O., Eppley, J. M., Smith, J. M., Chavez, F. P., Scholin, C. A. & DeLong, E. F. (2015) Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences.

Carolan, M., Smith, J. M. & Beman, J. M. (2015) Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone. Front Microbiol.

Hughes, B. B., Levey, M. D., Fountain, M. C., Carlisle, A. B., Chavez, F. P. & Gleason, M. G. (2015) Climate mediates threats to fish diversity and nursery function at the land-sea interface. Proceedings of the National Academy of Sciences USA. , 112(8025-8030.

Messié, M. & Chavez, F. P. (2015) Seasonal regulation of primary production in eastern boundary upwelling systems. Progress in Oceanography, 134(0), 1-18.

Miljutin, D., Miljutina, M. & Messié, M. (2015) Changes in abundance and community structure of nematodes from the abyssal polymetallic nodule field, Tropical Northeast Pacific. Deep-Sea Research Part I: Oceanographic Research Papers, 106(126-135.

Orsi, W. D., Smith, J. M., Wilcox, H. M., Swalwell, J. E., Carini, P., Worden, A. Z. & Santoro, A. E. (2015) Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. ISME J.

Pearse, J. S., Doyle, W. T., Pearce, V. B., Gowing, M. M., Pennington, J. T., Danner, E. & Wasser, A. (2015) Long-term Monitoring of Surfgrass Meadows in the Monterey Bay National Marine Sanctuary: Recovery followed by Stability after the Termination of a Domestic Sewage Discharge. Report for ONMS.

Pennington, J. T., Blum, M. & Chavez, F. P. (2015) Seawater sampling by an autonomous underwater vehicle: “Gulper” sample validation for nitrate, chlorophyll, phytoplankton, and primary production. Limnology and Oceanography: Methods.

Sevadjian, J. C., McPhee-Shaw, E. E., Raanan, B. Y., Cheriton, O. M. & Storlazzi, C. D. (2015) Vertical convergence of resuspended sediment and subducted phytoplankton to a persistent detached layer over the southern shelf of Monterey Bay, California. Journal of Geophysical Research: Oceans, 120(5), 3462-3483.

Smith, J. M., Damashek, J., Chavez, F. P. & Francis, C. A. (2015) Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean. Limnology and Oceanography.

Smith Jr., K. L., Messié, M., Sherman, A. D., Huffard, C. L., Hobson, B. W., Ruhl, H. A. & Boetius, A. (2015) Navigating the uncertain future of global oceanic time series. EOS, 96).

Sudek, S., Everroad, R. C., Gehman, A. M., Smith, J. M., Poirier, C. L., Chavez, F. P. & Worden, A. Z. (2015) Cyanobacterial distributions along a physico-chemical gradient in the northeastern Pacific Ocean. Environmental Microbiology.

Xu, Y., Rose, K. A., Chai, F., Chavez, F. P. & Ayon, P. (2015) Does spatial variation in environmental conditions affect recruitment? A study using a 3-D model of Peruvian anchovy. Progress in Oceanography.

Berdalet, E., McManus, M. A., Ross, O. N., Burchard, H., Chavez, F. P., Jaffe, J. S., Jenkinson, I. R., Kudela, R., Lips, I., Lips, U., Lucas, A., Rivas, D., Ruiz-de la Torre, M. C., Ryan, J., Sullivan, J. M. & Yamazaki, H. (2014) Understanding harmful algae in stratified systems: Review of progress and future directions. Deep Sea Research Part II: Topical Studies in Oceanography, 101(0), 4-20.

Chavez, F. P., Hobday, A. J., Strutton, P., Gierach, M., Radenac, M.-H., Chai, F., Lehodey, P., Evans, K. & Guevara, R. (2014) The tropical Pacific in relation to biological productivity and living resources. Intergovernmental Oceanographic Commission. UNESCO.

Doney, S., Rosenburg, A., Alexander, M., Chavez, F., Harvell, C. D., Hoffman, G., Orback, M. & Rucklehaus, M. (2014) Oceans and Marine Resources, in: J. M. Melillo, T. T. C. Richmond & G. W. Yohe (Eds) Climate Change Impacts in the United States: The Third National Climate Assessment 557-578.

Fiechter, J., Curchitser, E. N., Edwards, C. A., Chai, F., Goebel, N. L. & Chavez, F. P. (2014) Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography. Global Biogeochemical Cycles, 28(4), 2013GB004683.

Guo, L., Chai, F., Xiu, P., Xue, H., Rao, S., Liu, Y. & Chavez, F. P. (2014) Seasonal dynamics of physical and biological processes in the central California Current System: A modeling study. Ocean Dynamics, 64(8), 1137-1152.

Ho, D., Engel, V., Ferron, S., Friederich, G., Barr, J. & Wanninkhof, R. (2014) Carbon cycling in a mangrove-dominated estuary of Everglades National Park, Florida, USA. EGU General Assembly 2014. 16 ed. Vienna, Austria, Copernicus.

Lin, G., Chai, F., Xiu, P., Liu, Y., Rao, S. & Chavez, F. P. (2014) Seasonal dynamics of physical and biological processes in the central California Current System: A modeling study. Ocean Dynamics.

McCann, M., Schramm, R., Cline, D., Michisaki, R., Harvey, J. & Ryan, J. (2014) Using STOQS (The spatial temporal oceanographic query system) to manage, visualize, and understand AUV, glider, and mooring data. Autonomous Underwater Vehicles (AUV), 2014 IEEE/OES.

Muller-Karger, F. E., Kavanaugh, M. T., Montes, E., Balch, W. M., Breitbart, M., Chavez, F. P., Doney, S. C., Johns, E. M., Letelier, R. M., Lomas, M. W., Sosik, H. M. & White, A. E. (2014) A framework for a marine biodiversity observing network within changing continental shelf seascapes. Oceanography, 27(2)(18–23.

Ryan, J. P., McManus, M. A., Kudela, R. M., Lara Artigas, M., Bellingham, J. G., Chavez, F. P., Doucette, G., Foley, D., Godin, M., Harvey, J. B. J., Marin III, R., Messié, M., Mikulski, C., Pennington, T., Py, F., Rajan, K., Shulman, I., Wang, Z. & Zhang, Y. (2014) Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow. Deep Sea Research Part II: Topical Studies in Oceanography, 101(0), 63-79.

Sevadjian, J. C., McManus, M. A., Ryan, J., Greer, A. T., Cowen, R. K. & Woodson, C. B. (2014) Across-shore variability in plankton layering and abundance associated with physical forcing in Monterey Bay, California. Continental Shelf Research, 72(0), 138-151.

Smith, J. M., Casciotti, K. L., Chavez, F. P. & Francis, C. A. (2014) Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters. ISME J, 8(8), 1704-1714.

Smith, J. M., Chavez, F. P. & Francis, C. A. (2014) Ammonium Uptake by Phytoplankton Regulates Nitrification in the Sunlit Ocean. PLOS One, 9(9):e108173(

Smith, J. M., Mosier, A. C. & Francis, C. A. (2014) Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments. Microbial Ecology, 69(1), 13-24.

Sutton, A. J., Feely, R. A., Sabine, C. L., McPhaden, M. J., Takahashi, T., Chavez, F. P., Friederich, G. E. & Mathis, J. T. (2014) Natural variability and anthropogenic change in equatorial Pacific surface ocean pCO2 and pH. Global Biogeochemical Cycles, 28(2), 2013GB004679.

Timmerman, A. H. V., McManus, M. A., Cheriton, O. M., Cowen, R. K., Greer, A. T., Kudela, R. M., Ruttenberg, K. & Sevadjian, J. (2014) Hidden thin layers of toxic diatoms in a coastal bay. Deep Sea Research Part II: Topical Studies in Oceanography, 101(0), 129-140.

Bjorkstedt, E. P., Goericke, R., McClatchie, S., Weber, E., Watson, W., Lo, N., Peterson, W. T., Brodeur, R. D., Auth, T., Fisher, J., Morgan, C., Peterson, J., Largier, J., Bograd, S. J., Durazo, R., Gaxiola-Castro, G., Lavaniegos, B., Chavez, F. P., Collins, C. A., Hannah, B., Field, J., Sakuma, K., Satterthwaite, W., O’Farrell, M., Hayes, S., Harding, J., Sydeman, W. J., Thompson, S. A., Warzybok, P., Bradley, R., Jahncke, J., Golightly, R. T., Schneider, S. R., Suryan, R. M., Gladics, A. J., Horton, C. A., Kim, S. Y., Melin, S. R., DeLong, R. L. & Abell, J. (2013) State Of The California Current 2011-2012: Ecosystems Respond To Local Forcing As La Nina Wavers And Wanes. California Cooperative Oceanic Fisheries Investigations Reports, 53(41-76.

De Brabandere, L., Canfield, D. E., Dalsgaard, T., Friederich, G. E., Revsbech, N. P., Ulloa, O. & Thamdrup, B. (2013) Vertical partitioning of nitrogen-loss processes across the oxic-anoxic interface of an oceanic oxygen minimum zone. Environmental Microbiology.

Fishman, J., Iraci, L. T., Al-Saadi, J., Chance, K., Chavez, F., Chin, M., Coble, P., Davis, C., DiGiacomo, P. M., Edwards, D., Eldering, A., Goes, J., Herman, J., Hu, C., Jacob, D. J., Jordan, C., Kawa, S. R., Key, R., Liu, X., Lohrenz, S., Mannino, A., Natraj, V., Neil, D., Neu, J., Newchurch, M., Pickering, K., Salisbury, J., Sosik, H., Subramaniam, A., Tzortziou, M., Wang, J. & Wang, M. (2013) The United States’ Next Generation Of Atmospheric Composition And Coastal Ecosystem Measurements NASA’s Geostationary Coastal And Air Pollution Events (GEO-CAPE) Mission. Bulletin of the American Meteorological Society, 93(10), 1547-+.

Gierach, M. M., Messié, M., Lee, T., Karnauskas, K. B. & Radenac, M.-H. (2013) Biophysical responses near equatorial islands in the Western Pacific Ocean during El Niño/La Niña transitions. Geophysical Research Letters, 40(20), 2013GL057828.

Gomes, K., Cline, D., Edgington, D., Godin, M., Maughan, T., McCann, M., O’Reilly, T., Bahr, F., Chavez, F., Messié, M., Das, J. & Rajan, K. (2013) ODSS: A Decision Support System for Ocean Exploration. 29th IEEE International Conference on Data Engineering (ICDE). Brisbane, Australia, IEEE.

Greer, A. T., Cowen, R. K., Guigand, C. M., McManus, M. A., Sevadjian, J. C. & Timmerman, A. H. V. (2013) Relationships between phytoplankton thin layers and the fine-scale vertical distributions of two trophic levels of zooplankton. Journal of Plankton Research, 35(5), 939-956.

Messié, M. & Chavez, F. P. (2013) Physical-biological synchrony in the global ocean associated with recent variability in the central and western equatorial Pacific. Journal of Geophysical Research, 118(8), 3782-3794.

Ottesen, E. A., Young, C. R., Eppley, J. M., Ryan, J. P., Chavez, F. P., Scholin, C. A. & DeLong, E. F. (2013) Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences of the United States of America, 110(6), E488-E497.

Radenac, M.-H., Messié, M., Leger, F. & Bosc, C. (2013) A very oligotrophic zone observed from space in the equatorial Pacific warm pool. Remote Sensing of Environment, 134(224-233.

Ryan, J. P., McManus, M. A., Kudela, R. M., Lara Artigas, M., Bellingham, J. G., Chavez, F. P., Doucette, G., Foley, D., Godin, M., Harvey, J. B. J., Marin III, R., Messié, M., Mikulski, C., Pennington, J. T., Py, F., Rajan, K., Shulman, I., Wang, Z. & Zhang, Y. (2013) Boundary influences on phytoplankton ecology in a stratification-enhanced upwelling shadow. Deep-Sea Research Part II, 101), 63-79.

Santora, J. A., Sydeman, W. J., Messié, M., Chai, F., Chao, Y., Thompson, S. A., Wells, B. K. & Chavez, F. P. (2013) Triple check: Observations verify structural realism of an ocean ecosystem model. Geophysical Research Letters, 40(7).

Tugrul, S., Murray, J. W., Friederich, G. E. & Salihoglu, I. (2013) Spatial and temporal variability in the chemical properties of the oxic and suboxic layers of the Black Sea. Journal of Marine Systems, 0).

Xu, Y., Chai, F., Rose, A., Ñiquen , M. & Chavez, F. P. (2013) Environmental influences on the interannual variation and spatial distribution of Peruvian anchovy (Engraulis ringens) population dynamics from 1991 to 2007: a three-dimensional modeling study. Ecological Modelling, . Global Climate Change and Marine Ecosystems, 264(64-82.

Bertrand, A., Chaigneau, A., Peraltilla, S., Ledesma, J., Graco, M., Monetti, F. & Chavez, F. P. (2012) Oxygen: A Fundamental Property Regulating Pelagic Ecosystem Structure in the Coastal Southeastern Tropical Pacific. Plos One, 6(12), 8.

Buitenhuis, E. T., W. K. W. Li, D. Vaulot, M. W. Lomas, M. Landry, F. Partensky, D. M. Karl, O. Ulloa, L. Campbell, S. Jacquet, F. Lantoine, F. Chavez, D. Macias, M. Gosselin & McManus, G. B. (2012) Picophytoplankton biomass distribution in the global ocean. Earth System Science Data Discussions, 5(221-242.

Chavez, F. P. (2012) Climate change and marine ecosystems. Proceedings of the National Academy of Sciences of the United States of America, 109(47), 19045-19046.

Das, J., Py, F., Maughan, T., O’Reilly, T., Messié, M., Ryan, J., Sukhatme, G. S. & Rajan, K. (2012) Coordinated sampling of dynamic oceanographic features with underwater vehicles and drifters. International Journal of Robotics Research, 31(626-646.

Frolov, S., Ryan, J. P. & Chavez, F. P. (2012) Predicting euphotic-depth-integrated chlorophyll-a from discrete-depth and satellite-observable chlorophyll-a off central California. Journal of Geophysical Research-Oceans, 117(7.

Gomez, F., Montecinos, A., Hormazabal, S., Cubillos, L. A., Correa-Ramirez, M. & Chavez, F. P. (2012) Impact of spring upwelling variability off southern-central Chile on common sardine (Strangomera bentincki) recruitment. Fisheries Oceanography, no-no.

Hales, B., Strutton, P. G., Saraceno, M., Letelier, R., Takahashi, T., Feely, R., Sabine, C. & Chavez, F. (2012) Satellite-based prediction of pCO2 in coastal waters of the eastern North Pacific. Progress in Oceanography.

Jolliff, J. K., Gould Jr., R. W., Penta, B., Teague, W. J., deRada, S., Chavez, F. P. & Arnone, R. A. (2012) Water mass bio-optical properties in the Monterey Bay region: Fluorescence-based inference of shifts in phytoplankton photophysiology. Journal of Geophysical Research.

Messié, M. & Chavez, F. P. (2012) A global analysis of ENSO synchrony: the oceans biological response to physical forcing. Journal of Geophysical Research.

Paerl, R. W., Turk, K. A., Beinart, R. A., Chavez, F. P. & Zehr, J. P. (2012) Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR. Environmental Microbiology, 14(3), 580-593.

Pfeil, B., Olsen, A., Bakker, D. C. E., Hankin, S., Koyuk, H., Kozyr, A., Malczyk, J., Manke, A., Metzl, N., Sabine, C. L., Akl, J., Alin, S. R., Bellerby, R. G. J., Borges, A., Boutin, J., Brown, P. J., Cai, W. J., Chavez, F. P., Chen, A., Cosca, C., Fassbender, A. J., Feely, R. A., González-Dávila, M., Goyet, C., Hardman-Mountford, N., Heinze, C., Hood, M., Hoppema, M., Hunt, C. W., Hydes, D., Ishii, M., Johannessen, T., Jones, S. D., Key, R. M., Körtzinger, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lenton, A., Lourantou, A., Merlivat, L., Midorikawa, T., Mintrop, L., Miyazaki, C., Murata, A., Nakadate, A., Nakano, Y., Nakaoka, S., Nojiri, Y., Omar, A. M., Padin, X. A., Park, G. H., Paterson, K., Perez, F. F., Pierrot, D., Poisson, A., Ríos, A. F., Santana-Casiano, J. M., Salisbury, J., Sarma, V. V. S. S., Schlitzer, R., Schneider, B., Schuster, U., Sieger, R., Skjelvan, I., Steinhoff, T., Suzuki, T., Takahashi, T., Tedesco, K., Telszewski, M., Thomas, H., Tilbrook, B., Tjiputra, J., Vandemark, D., Veness, T., Wanninkhof, R., Watson, A. J., Weiss, R., Wong, C. S. & Yoshikawa-Inoue, H. (2012) A uniform, quality controlled Surface Ocean CO2 Atlas (SOCAT). Earth System Science Data Discussions, Copernicus Publications, 5(2), 735-780.

Bjorkstedt. E., Goericke, R., McClatchie, S., Chavez, F. P., Weber, E., Watson, W., Lo, N., Peterson, B., Emmett, B., Brodeur, R., Peterson, J., Litz, M., Gomez-Valdez, J., Gaxiola-Castro, G., Lavaniegos, B., Collins, C. A., Field, J., Sakuma, K., Warzybok, P., Bradley, R., Jahncke, J., Bograd, S., Schwing, F., Campbell, G. S., Hildebrand, J., Sydeman, W., Thompson, S. A., Largier, J., Halle, C., Kim, S. Y. & Abell, J. (2011) State of the California Current 2010-2011. Regionally variable responses to a strong (but fleeting?) La Niña. California Cooperative Fisheries Investigation Reports, 52(36:68.

Castro, C. G., Collins, C. A., Pennington, J. T., Zúñiga, D. & Chavez, F. P. (2011) Spatial distribution and offshore export of total organic carbon along the eastern boundary of the Subtropical North Pacific. Advances in Oceanography and Limnology, 2(2), 93-106.

Chavez, F. P., Messié, M. & Pennington, J. T. (2011) Marine primary production in relation to climate variability and change. Annual Review of Marine Science, 3), 227-260.

Das, J., Maughan, T., McCann, M., Godin, M., O’Reilly, T., Messié, M., Bahr, F., Gomes, K., Py, F., Bellingham, J., Sukhatme, G. S. & Rajan, K. (2011) Towards mixed-initiative, multi-robot field experiments: design, deployment, and lessons learned. International Conference on Intelligent Robots and Systems (IROS). San Francisco, USA.

Gray, S. E. C., DeGrandpre, M. D., Moore, T. S., Martz, T. R., Friederich, G. E. & Johnson, K. S. (2011) Applications of in situ pH measurements for inorganic carbon calculations. Marine Chemistry, 125(1-4), 82-90.

Messié, M. & Chavez, F. (2011) Global Modes of Sea Surface Temperature Variability in Relation to Regional Climate Indices. Journal of Climate, 24(16), 4314-4331.

Paerl, R. W., Johnson, K. S., Welsh, R. M., Worden, A. Z., Chavez, F. P. & Zehr, J. P. (2011) Differential distributions of Synechococcus subgroups across the California current system. Frontiers in Microbiology 2), 1-22.

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