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Publications

Abbott, M.R., K.H. Brink, C.R. Booth, D. Blasco, L.A. Codispoti, P.P. Niiler, and S.R. Ramp (1990). Observations of phytoplankton and nutrients from a Lagrangian drifter off northern California. Journal of Geophysical Research, 95: 9393–9409.

Adams, P.B., J.L. Butler, C.H. Baxter, T.E. Laidig, K.A. Halin, and W.W. Wakefield (1995). Population estimates of Pacific coast groundfish from video transects and swept-area trawls. Fishery Bulletin, 93: 446–455.

Adams, L. and G.I. Matsumoto (2007). Investigating coastal processes and nitrate levels in the Elkhorn Slough using real-time data. Oceanography, 20: 200-204.

Ahmad, A., J.P. Barry, and D.C. Nelson (1999). Phylogenetic and physiological affinity of wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon with Thioploca spp. Applied and Environmental Microbiology, 65: 270–277.

Aiello, I.W., R.E. Garrison, J.C. Moore, M. Kastner, and D.S. Stakes (2001). Anatomy and origin of carbonate structures in a Miocene cold-seep field. Geology, 29: 1,111–1,114.

Alendal, G., P. Haugan, R. Gangsto, K. Caldeira, E. Adams, P.G. Brewer, E.T. Peltzer, G. Rehder, and T. Sato (2006). Comment on "Fate of Rising CO 2 Droplets in Seawater". Environmental Science and Technology, 40: 3653-3654.

Allison, N., A.A. Finch, J.M. Webster, and D.A. Clague (2007). Paleoenvironmental records from fossil corals: The effects of submarine diagensis on temperature and climate estimates. Geochimica et Cosmochimica Acta, 71: 4693-4703.

Altabet, M., C. Pilskaln, R. Thunnell, R. Pride, D. Sigman, F.P. Chavez, and R. Francois (1999). The nitrogen isotope biogeochemistry of sinking particles from the margin of the eastern North Pacific. Deep-Sea Research, 46: 655–679.

Anbar, A.D., Y.L. Yung, and F.P. Chavez (1996). Methyl bromide: Ocean sources, ocean sinks, and climate sensitivity. Global Biogeochemical Cycles, 10: 175–190.

Ananyev, G., Z.S. Kolber, D. Klimov, P.G. Falkowski, J.A. Berry, U. Rascher, R. Martin, and B. Osmond (2005). Remote sensing of heterogeneity in photosynthetic efficiency, electron transport, and dissipation of excess light in Populus deltoides stands under ambient and elevated CO 2 concentrations, and in a tropical forest canopy, using a new laser-induced fluorescence transient (LIFT) device. Global Change Biology, 11: 1195-1206.

Anderson, D.M., D.M. Kulis, B.A. Keafer, K.E. Gribble, R. Marin III, and C.A. Scholin (2005). Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep-Sea Research Part II, 52: 2467-2490.

Anderson, R.F., Z. Chase, M.Q. Fleisher, and J. Sachs (2002). The Southern Ocean's biological pump during the last glacial maximum. Deep-Sea Research II, 49: 1,909–1,938.

Archer, D.E. and K.S. Johnson (2000). A model of the iron cycle in the ocean. Global Biogeochemical Cycles, 14: 269–279.

Austin, Jr., J.A., C.S. Fulthorpe, G.S. Mountain, D.L. Orange, and M.E. Field (1996). Continental-margin seismic stratigraphy: Assessing the preservation potential of heterogeneous geological processes operating on continental shelves and slopes. Oceanography, 9: 173–178.

Auzende, J.-M. and H.G. Greene, editors (1999). Marine benthic habitats. Oceanologica Acta, Special Issue, 22: 663–668.

Aya, I., R. Kojima, K. Yamane, K. Shiozaki, P.G. Brewer, and E.T. Peltzer (2004). In situ experiments of cold CO₂ release in mid-depth. Energy, 29: 1499-1509.

Ayers, K., L. Rhodes, J. Tyrrell, M. Gladstone, and C.A. Scholin (2005). International accreditation of sandwich hybridisation assay format DNA probes for micro-algae. New Zealand Journal of Marine and Freshwater Research, 39: 1225-1231.

Babin, M., J.J. Cullen, C.S. Roesler, P.L. Donaghay, G.J. Doucette, M. Kahru, M.R. Lewis, C.A. Scholin, M.E. Sieracki, and H.M. Sosik (2005). New approaches and technologies for observing harmful algal blooms. Oceanography, 18: 210-227.

Baco, A.R., C.R. Smith, G.K. Roderick, A.S. Peek, and R.C. Vrijenhoek (1999). Molecular identification of vesicomyid clams associated with whale-falls on the California Slope. Marine Ecology Progress Series, 182:137–147.

Baggeroer, A.B., B. Sperry, K. Lashkari, C.-S. Chiu, J.H. Miller, P.N. Mikhalevsky, and K. von der Heydt (1994). Vertical array receptions of the Heard Island transmissions. Journal of the Acoustical Society of America, 96: 2395–2413.

Bailey, D.M., H.A. Ruhl, and K.L. Smith Jr. (2006). Long-term changes in benthopelagic fish abundance in the abyssal northeast Pacific Ocean. Ecology, 87: 549-555.

Baklouti, M., V. Faure, L. Pawlowski, and A. Sciandra (2006). Investigation and sensitivity analysis of the mechanistic phytoplankton model implemented in a new modular numerical tool (Eco3M) dedicated to biogeochemical modelling. Progress in Oceanography, 71: 34-58.

Barber, R.T. and F.P. Chavez (1991). Regulation of primary productivity rate in the equatorial Pacific Ocean. Limnology and Oceanography, 36: 1803–1815.

Barber, R.T., M.P. Sanderson, S.T. Lindley, F. Chai, J. Newton, C.C. Trees, D.G. Foley, and  F.P. Chavez (1996). Primary productivity and its regulation in the equatorial Pacific during and following the 1991-92 El Niρo. Deep-Sea Research II, 43: 933–970.

Barde, J., D.R. Edgington, and J.C. Desconnets (2007). A generic approach to manage metadata standards. OSGeo Journal, 3: 24-30.

Bargu, S., C. Powell, S. Coale, G. Doucette, and M.W. Silver (2002). Domoic acid detection in krill: a potential vector in marine food webs. Marine Ecology Progress Series, 237: 209–216.

Barry, J.P. and C.H. Baxter (1993). Survey design considerations for deep-sea benthic communities using ROVs. Marine Technology Society Journal, 26: 20–26.

Barry, J.P., C.H. Baxter, R.D. Sagarin, and S.E. Gilman (1995). Climate-related, long-term faunal changes in a California rocky intertidal community. Science, 267: 672–675.

Barry, J.P., K.R. Buck, S.K. Goffredi, and J. Hashimoto (2000). Ultrastructure studies of two chemosynthetic invertebrate-bacterial symbioses (Lamellibrachia sp. and Acharax sp.) from the Hatsushima cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 16: 91–99.

Barry, J.P., K.R. Buck, R.K. Kochevar, D.C. Nelson, Y. Fujiwara, S.K. Goffredi, and J. Hashimoto (2002). Methane-based symbiosis in a mussel, Bathymodiolus platifrons, from cold seeps in Sagami Bay, Japan. Invertebrate Biology, 121: 47–54.

Barry, J.P., K.R. Buck, C. Lovera, L. Kuhnz, and P.J. Whaling (2005). Utility of deep-sea CO₂ release experiments in understanding the biology of a high CO₂ ocean: Effects of hypercapnia on deep-sea meiofauna. Journal of Geophysical Research, Oceans, 110: C09S12, doi: 10.1029/2004JC002629.

Barry, J.P., K.R. Buck, C.F. Lovera, L. Kuhnz, P.J. Whaling, E.T. Peltzer, P. Walz, and P.G. Brewer (2004). Effects of direct ocean CO₂ injection on deep-sea meiofauna. Journal of Oceanography, 60: 759-766.

Barry, J.P. and P.K. Dayton (1991). Physical heterogeneity and the community organization of marine systems. In: Ecological Heterogeneity, edited by J. Kolasa and S.T.A. Pickett. Springer-Verlag, New York, New York, pp. 268–320.

Barry, J.P. and J.C. Drazen (2007). Response of deep-sea scavengers to mild hypercapnia and the odor from a dead grenadier. Marine Ecology Progress Series, 350: 193-207.

Barry, J.P., J. Grebmeier, J. Smith, and R.B. Dunbar (2003). Bathymetric versus oceanographic control of benthic megafaunal patterns in the Ross Sea, Antarctica. Antarctic Research Series, 78: 327-354.

Barry, J.P., H.G. Greene, D.L. Orange, C.H. Baxter, B.H. Robison, R.E. Kochevar, J.W. Nybakken, D.L. Reed, and C.M. McHugh (1996). Biologic and geologic characteristics of cold seeps in Monterey Bay, California. Deep-Sea Research I, 43: 1739–1762.

Barry, J.P. and R.E. Kochevar (1998). A tale of two clams: Differing chemosynthetic lifestyles among vesicomyids in Monterey Bay cold seeps. Cahier de Biologie Marine, 39: 329–331.

Barry, J.P. and R.E. Kochevar (1999). Calyptogena diagonalis, a new Vesicomyid Bivalve from subduction zone seeps in the eastern North Pacific. The Veliger, 42: 117–123.

Barry, J.P., R.E. Kochevar, and C.H. Baxter (1997). The influence of pore-water chemistry and physiology in the distribution of vesicomyid clams at cold seeps in Monterey Bay: Implications for patterns of chemosynthetic community organization. Limnology and Oceanography, 42: 318–328.

Barry, J.P., R.E. Kochevar, C.H. Baxter, and C. Harrold (1997). Calyptogena packardana, a new species of vesicomyid bivalve from cold seeps in Monterey Bay, California. The Veliger, 40: 341–349.

Barry, J.P., R.E. Kochevar, J. Hashimoto, Y. Fujiwara, K. Fujikura, and H.G. Greene (1997). Studies of the growth and physiology of chemosynthetic fauna at Cold Seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 13: 417–423.

Barry, J.P., P.J. Whaling, and R.K. Kochevar (2007). Growth, production, and mortality of the chemosynthetic vesicomyid bivalve, Calyptogena kilmeri, from cold seeps off central California. Marine Ecology, 28: 169-182.

Barry, J.P., M.M. Yoklavich, G.M. Cailliet, D.A. Ambrose, and B.S. Antrim (1996). Trophic ecology of the dominant fishes in Elkhorn Slough, California. Estuaries, 19: 115–138.

Bates, T.S., R.P. Kiene, G.V. Wolfe, P.A. Matrai, F.P. Chavez, K.R. Buck, B.W. Blomquist, and R.W. Cuhel (1994). The cycling of sulfur in surface seawater of the Northeast Pacific. Journal of Geophysical Research, 99: 7835–7843.

Bates, S.S., C.A. Scholin, M. Ferguson, and C.Leger (1999). Application of ribosomal RNA-targeted probes to detect Pseudo-nitzschia multiseries and P. pungens in Atlantic Canadian waters. Canadian Technical Reports on Fisheries and Aquatic Sciences, 2261: 63–67.

Beeson, M.H., D.A. Clague, and J.P. Lockwood (1996). Origin and depositional environment of clastic deposits in the Hilo drill hole, Hawaii. Journal of Geophysical Research, 101: 11,617–11,629.

Begnaud, M.L., K.C. McNally, D.S. Stakes and V.A. Gallardo (2000). A crustal velocity model for locating earthquakes in Monterey Bay, California. Bulletin of the Seismological Society of America, 90: 1391–1408.

Begnaud, M.L. and D.S. Stakes (2000). Constraining continental margin seismicity by extending on-shore seismograph stations to critical off-shore sites. Bulletin of the Seismological Society of America, 90: 414–424.

Behrenfeld, M.J., K. Worthington, R.M. Sherrell, F.P. Chavez, P. Strutton, M. McPhaden, and D.M. Shea (2006). Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics. Nature, 442: 1025-1028.

Beier, J.A., S. Wakeham, C.H. Pilskaln, and S. Honjo (1991). Enrichment in saturated compounds of Black Sea interfacial sediment. Nature, 351: 642–644.

Bιjΰ, O., L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd, L.P. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, and E.F. DeLong (2000). Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science, 289: 1902–1906.

Bιjΰ, O., E.N. Spudich, J.L. Spudich, M. Leclerc, and E.F. DeLong (2001). Proteorhodopsin phototrophy in the ocean. Nature, 411: 786–789.

Bιjΰ, O., M.T. Suzuki, J.F. Heidelberg, W.C. Nelson, C.M. Preston, T. Hamada, J.A. Eisen, C. Fraser, and E.F. DeLong (2002). Unexpected diversity among marine aerobic anoxygenic phototrophs. Nature, 415: 630–633.  

Bιjΰ, O., M.T. Suzuki, E.V. Koonin, L. Aravind, A. Hadd, L.P. Nguyen, R. Villacorta, M. Amjadi, C. Garrigues, S.B. Jovanovich, R. Feldman, and E.F. DeLong (2000). Construction and analysis of bacterial artificial chromosome libraries from a natural microbial assemblage. Environmental Microbiology, 2: 516–529.

Bellingham , J.G. (2006). New challenges for ocean technology. Marine Technology Society Journal, 40: 139-140.

Bellingham, J.G. and K. Rajan (2007). Robotics in remote and hostile environments. Science, 318: 1098-1102.

Bellingham, J.G., J. Steitlien, J. Overland, S. Jajan, P. Stein, J. Stannard, W. Kirkwood, and D. Yoerger (2000). An arctic basic observational capability using AUVs. Oceanography, 13: 64–70.

Bellingham J.G. and Y. Zhang (2005). Observing processes that vary in time and space with heterogeneous mobile networks. Proceedings of the International Workshop on Underwater Robotics, Genoa, Italy, pp. 9-16.

Benson, S.R., D.A. Croll, B. Marinovic, F.P. Chavez, and J.T. Harvey (2002). Temporal variability in the cetacean assemblage of a coastal upwelling center spanning an El Niρo. Progress in Oceanography, 54: 279–291.

Berelson, W.M., K.S. Johnson, K.H. Coale, and H.C. Li (2002). Organic matter diagenesis in the sediments of the San Pedro shelf along a transect affected by sewage effluent. Continental Shelf Research, 22: 1,101–1,115.

Berelson, W., J. McManus, K. Coale, K.S. Johnson, D. Burdidge, T. Kilgore, D. Colodner, F.P. Chavez, R. Kudela, and J. Boucher (2003). A time series of benthic flux measurements from Monterey Bay, California. Continental Shelf Research, 23: 457-481.

Berelson, W. M., J. McManus, K.H. Coale, K. S. Johnson, T. Kilgore, D. Burdidge, and C. H. Pilskaln (1996). Biogenic matter diagenesis on the sea floor: A comparison between two continental margin transects. Journal of Marine Research, 54: 731–762.

Bermudez, L. , J. Graybeal, and R. Arko (2006). A marine platforms ontology: Experiences and lessons. In: Proceedings of the Semantic Sensor Networks Workshop at the Fifth International Semantic Web Conference (ISWC), Athens, Georgia.

Bermudez, L. and M. Piasecki (2006). Metadata community profiles for the semantic web. Geoinformatica, 10: 159-176.

Bernhard, J.M. and K.R. Buck (2004). Eukaryotes of the Cariaco, Soledad, and Santa Barbara Basins: Protists and metazoans associated with deep-water marine sulfide-oxidizing microbial mats and their possible effects on the geologic record. In: Sulfur Biogeochemistry—Past and Present: Geological Society of America Special Paper, edited by J.P. Amend, K.J. Edwards, and T.W. Lyons, 379: 5-47.

Bernhard, J.M., K.R. Buck, and J.P. Barry (2001). Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera. Deep-Sea Research I, 48: 2,233–2,249.

Bernhard, J.M., K.R. Buck, M.A. Farmer and S.S. Bowser (2000). The Santa Barbara Basin is a symbiosis oasis. Nature, 403: 77–80.

Beynon, J.D., I.J. McRae, S.L. Huston, D.C. Nelson, I.H. Segel, and A.J. Fisher (2001). Crystal structure of ATP sulfurylase from the bacterial symbiont of the hydrothermal vent tubeworm Riftia pachyptila. Biochemistry, 40: 14,509–14,517.

Block, B.A., D.P. Costa, G.W. Boehlert, and R.E. Kochevar (2003). Revealing pelagic habitat use: The tagging of Pacific Pelagics Program. Oceanologica Acta, 25: 255-266.

Borowski, W.S., N. Cagatay, Y.G. Ternois, C.K. Paull, L.D. Keigwin, D. Rio, G.D. Acton, G.G. Bianchi, W.P. Chaisson, B.M. Clement, E. Cortijo, G.B. Dunbar, R.D. Flood, S.-O. Franz, L. Giosan, J. Gruetzner, S. Hagen, B. Haskell, M.J. Horowitz, E.P. Laine, S.P. Lund, M. Okada, M.-S. Poli, I. Raffi, M.K. Reuer, T. Williams, D.M. Winter, and M.E. Yokokawa (2001). Carbon isotopic composition of dissolved CO₂, CO₂ gas, and methane, Blake-Bahama Ridge and Northeast Bermuda Rise, ODP Leg 172. In: Proceedings of the Ocean Drilling Program, Scientific Results,
http://www-odp.tamu.edu/publications/172_SR/chap_03/chap_03.htm

Borowski, W.S., T.M. Hoehler, M.J. Alperin, N.M. Rodriguez, and C.K. Paull (2000). Significance of anaerobic methane oxidation in methane-rich sediments overlying the Blake Ridge Gas Hydrates. In: Proceedings of the Ocean Drilling Program, Scientific Results, edited by C.K. Paull, Matsumoto, R., Wallace, P., and Dillon, W.P. 164: 87–99.

Borowski, W.S. and C.K. Paull (2000). Nitrogen isotopic composition of pore water ammonium, Blake Ridge, Site 997, ODP Leg 164, Data Report. In: Proceedings of the Ocean Drilling Program, Scientific Results, edited by C.K. Paull, Matsumoto, R.,Wallace, P., and Dillon, W.P. 164: 171–172.

Borowski, W.S., C.K. Paull, and W. Ussler, III (2002). The meeting of two microbial worlds: Geochemistry of the sulfate-methane interface. Ocean Drilling Program Greatest Hits, Volume 2. http://joiscience.org:16080/greatesthits2/pdfs/borowski.pdf.  

Borowski, W.S., C.K. Paull, and W. Ussler III (1999). Global and local variations of interstitial sulfate gradients in deep-water, continental margin sediments: Sensitivity to underlying gas hydrates. Marine Geology, 159: 131–154.

Braby, C.E., G.W. Rouse, S.B. Johnson, W.J. Jones, and R.C. Vrijenhoek (2007). Bathymetric and temporal variation among Osedax boneworms and associated megafauna on whale-falls in Monterey Bay, California. Deep-Sea Research Part I, 54: 1773-1791.

Braby, C.E. and G.N. Somero (2006). Ecological gradients and relative abundance of native (Mytilus trossulus) and invasive (M.galloprovincialis) blue mussels in the California hybrid zone. Marine Biology, 148: 1249-1262.

Braby, C.E. and G.N. Somero (2006). Following the heart: Temperature and salinity effects on heart rate in native and invasive species of blue mussels (genus Mytilus). Journal of Experimental Biology, 209: 2554-2566.

Braby, C.E., and G.N. Somero (2005). Ecological gradients and relative abundance of native (Mytilus trossulus) and invasive (Mytilus galloprovincialis) blue mussels in the California hybrid zone. Marine Biology , doi : 10.1007/s00227-005-0177-0.

Brady, R., B. Wernicke, M. McNutt, J. Mutter, and G. Correa (2000). Results of the Basin and Range Geoscientific Experiment (BARGE): A marine-style seismic reflection survey across the eastern boundary of the central Basin and Range Province. Geochemistry Geophysics Geosystems, vol. 1, Paper number 2000GC000078. Published September 22, 2000.

Bresina, J., A. Jonsson, P. Morris, and K. Rajan. (2005). Activity Planning for the Mars Exploration Rovers, Proceedings for the International Conference on Automated Planning and Scheduling, Monterey, California.

Brewer, P.G. (2007). Evaluating a technological fix for climate. Proceedings of the National Academy of Sciences, 104: 9915-9916.

Brewer, P.G. (2004). Direct injection of CO₂ in the ocean. In: Toward CO₂ stabilization: Issues, strategies, and consequences, edited by C. Fields and M.R. Raupach. Island Press, pp. 469-478.

Brewer, P.G. (2000). Chemical oceanography. In: Introduction to Earth Systems: Processes and Issues, edited by W. G. Ernst. Cambridge University Press, pp. 182–193.

Brewer, P.G. (2000). Contemplating action: Storing carbon dioxide in the ocean. Oceanography, 13: 84–92.

Brewer, P.G. (2000). Gas hydrates and global climate change. Proceedings of the Third International Conference on Gas Hydrates, New York Academy of Sciences, 195–199.

Brewer, P.G. (2000). Major international programs in ocean sciences: Ocean chemistry. In: 50 Years of Ocean Discovery, 1950-2000, edited by The National Science Foundation. National Academy Press, pp. 152–161.

Brewer, P.G. (1997). Ocean chemistry of the fossil fuel CO₂ signal: The haline signal of "business as usual." Geophysical Research Letters, 24: 1367–1369.

Brewer, P.G. (Chair), Panel on boundary layer dynamics, Naval Studies Board (1997). Boundary Layer Dynamics: NRL strategic series. National Academy Press, Washington, D.C., 40 pages.

Synthesis Panel, Effects Panel, Mitigation Panel (P.G. Brewer), Adaptation Panel, and E.A.P. P. Committee on Science (1992). In: Policy implications of greenhouse warming—mitigation, adaptation, and the science base. National Academy Press, Washington, D. C., 918 pages.

Brewer, P.G. , B. Chen, R. Warzinski, A. Baggeroer, E.T. Peltzer, R.M. Dunk, and P. Walz (2006). Three-dimensional acoustic monitoring and modeling of a deep-sea CO 2 droplet cloud. Geophysical Research Letters, 33: doi: 10.1029/2006GL027181.

Brewer, P.G., G.E. Friederich, E.T. Peltzer, and F.M. Orr, Jr. (1999). Direct experiments on the ocean disposal of fossil fuel CO₂. Science, 284: 943–945.

Brewer, P.G., D.M. Glover, C. Goyet, and D.K. Shafer (1995). pH of the North Atlantic Ocean: Improvements to the global model for sound absorption in sea water. Journal of Geophysical Research, 100: 8761–8776.

Brewer, P.G., C. Goyet, and G.E. Friederich (1997). Direct observation of the oceanic CO₂ increased revisited. Proceedings of the National Academy of Sciences, USA, 94: 8308–8313.

Brewer, P.G., G. Malby, J.D. Pasteris, S.N. White, E.T. Peltzer, B. Wopenka, J. Freeman, and M.O. Brown (2004). Development of a laser spectrometer for deep-ocean science. Deep Sea Research 1, 51: 739-753.

Brewer, P.G. and T. Moore, Eds. (2001). Ocean sciences at the new millennium, University Corporation of Atmospheric Research, 152 pp.

Brewer, P.G. and F.M. Orr, Jr. (2000). CO₂: The burning issue. Chemistry & Industry, 17: 567–571.

Brewer, P.G., F.M. Orr, Jr., G.E. Friederich, K.A. Kvenvolden, and D.L. Orange (1998). Gas hydrate formation in the deep sea: In situ experiments with controlled release of methane, natural gas, and carbon dioxide. Energy and Fuels, 12: 183–188.

Brewer, P.G., F.M. Orr, Jr., G.E. Friederich, K.A. Kvenvolden, and D.L. Orange (1997). Hydrate formation during controlled release of CH4 and CO₂ in Monterey Bay. American Chemical Society, Division of Fuel Chemistry, 42: 475–479.

Brewer, P.G., F.M. Orr, Jr., G.E. Friederich, K.A. Kvenvolden, D.L. Orange, J. McFarlane, and W. Kirkwood (1997). Deep-ocean field test of methane hydrate formation from a remotely operated vehicle. Geology, 25: 407–410.

Brewer, P.G., J. Pasteris, G. Malby, E.T. Peltzer, S.N. White, J. Freeman, B. Wopenka, M. Brown, and D. Cline (2002). Laser raman spectroscopy used to study the ocean at 3600-m depth. EOS, Transactions, American Geophysical Union, 83: 469–470.

Brewer, P.G., C.K. Paull, E.T. Peltzer, W. Ussler, III, G. Rehder, and G.E. Friederich (2002). Measurements of the fate of gas hydrates during transit through the ocean water column. Geophysical Research Letters, 29: doi10.1029/2002GL014727. 

Brewer, P.G., E.T. Peltzer, I. Aya, P. Haugan, R. Bellerby, K. Yamane, R. Kojima, P. Walz, and Y. Nakajima (2004). Small scale field study of an ocean CO₂ plume. Journal of Oceanography, 60: 751-758.

Brewer, P.G., E.T. Peltzer, G. Friederich, I. Aya, and K. Yamane (2000). Experiments on the ocean sequestration of fossil fuel CO₂: pH measurements and hydrate formation. Marine Chemistry, 72: 83–93.

Brewer, P.G., E.T. Peltzer, G.E. Friederich, and G. Rehder (2002). Experimental determination of the fate of rising CO₂ droplets in seawater. Environmental Science & Technology, 36: 5,441–5,446.

Brewer, P.G., E.T. Peltzer, P. Walz , I. Aya, K. Yamane, R. Kojima, Y. Nakajima, N. Nakayama, P. Haugan, and T. Johannessen (2005). Deep ocean experiments with fossil fuel carbon dioxide: Creation and sensing of a controlled plume at 4 km depth. Journal of Marine Research, 63: 9-33.

Broenkow, W.W., M.A. Yuen, and M.A. Yarbrough (1992). VERTEX: Biological implications of total attenuation and chlorophyll and phycoerythrin fluorescence distributions along a 2000 m deep section in the Gulf of Alaska. Deep-Sea Research, 39: 417–437.

Brown, K.M. and D.L. Orange (1993). Structural aspects of diapiric mιlange emplacement: The Duck Creek diapir. Journal of Structural Geology, 15: 831–847.

Browne, K.A., M.N. Tamburri, and R.K. Zimmer-Faust (1998). Modeling quantitative structure-activity relationships between animal behavior and environmental signal molecules. Journal of Experimental Biology, 201: 245–258.

Browne, W.E., S.H.D. Haddock, and M.Q. Martindale (2007). Phylogenetic analysis of lineage relationships among hyperiid amphipods as revealed by examination of the mitochondrial gene, cytochrome oxidase I (COI). Integrative and Comparative Biology, 47: 815-830.

Brzezinski, M.A., D.R. Phillips, F.P. Chavez, G.E. Friederich, and R.C. Dugdale (1997). Silica production in the Monterey California upwelling system. Limnology and Oceanography, 42: 1694–1705.

Buck, K.R., G. Ζrtebjerg, J. Larsen, and H. Thomsen (1992). Biomass and abundance of pelagic cyanobacteria and protists from the transition area between the Baltic Sea and the North Sea, July 1990. In: Proceedings of the 12th Baltic Marine Biologists Symposium, edited by E. Bjψrnestad, L. Hagerman, and K. Jensen. Olsen & Olsen, Fredensborg, Denmark, pp. 35–42.

Buck, K.R. and J.P. Barry (1998). Monterey Bay Cold Seep Infauna: Quantitative comparison of bacterial mat meiofauna with non-seep control sites. Cahier de Biologie Marine, 39: 333–336.

Buck, K.R., J.P. Barry, and A.G.B. Simpson (2000). Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Protistology, 36: 117–126.

Buck, K.R. and W.N. Bentham (1998). A novel symbiosis between a cyanobacterium, Synechococcus sp., an aplastidic protist, Solenicola setigera, and a diatom, Leptocylindrus mediterraneus, in the open ocean. Marine Biology, 132: 349–355.

Buck, K.R. and J.M. Bernhard (2002). Protistan-Prokaryotic symbioses in deep-sea sulfidic sediments. In: Symbiosis, edited by J. Seckbach. Kluwer, Dordrecht, The Netherlands, pp. 507–517.

Buck, K.R., P.A. Bolt, W.N. Bentham, and D.L. Garrison (1992). A dinoflagellate cyst from Antarctic sea ice. Journal of Phycology, 28: 15–18.

Buck, K.R. and F.P. Chavez (1994). Diatom aggregates from the open ocean. Journal of Plankton Research, 16: 1449–1457.

Buck, K.R., F.P. Chavez, and L. Campbell (1996). Basin-wide distributions of living carbon components and the inverted trophic pyramid of the central gyre of the North Atlantic Ocean, summer 1993. Aquatic Microbial Ecology, 10: 283–298.

Buck, K.R., F.P. Chavez, and H.A. Thomsen (1991). Choanoflagellates of the central California waters: Abundance and distribution. Ophelia, 33: 179–186.

Buck, K.R., D.L. Garrison, and T.L. Hopkins (1992). Abundance and distribution of tintinnid ciliates in an ice edge zone during the austral autumn. Antarctic Science, 4: 3–8.

Buck, K.R., H.J. Marchant, H.A. Thomsen, and D.L. Garrison (1990). Kakoeca antarctica gen et sp. nov., a loricate choanoflagellate (Acanthoecidae, Choanoflagellida) from Antarctic sea ice with a unique protoplast suspensory membrane. Zoologica Scripta, 19: 389–394.

Buck K.R., R. Marin III, and F.P. Chavez (2005). Heterotrophic dinoflagellate fecal pellet production: grazing of large, chain-forming diatoms during upwelling events in Monterey Bay, California. Aquatic Microbial Ecology, 40:293-298.

Buck, K.R. and J. Newton (1995). Fecal pellet flux in Dabob Bay during a diatom bloom: Contribution of microzooplankton. Limnology and Oceanography, 40: 306–315.

Buck, K.R., T.G. Nielsen, B.W. Hansen, D.G. Hansen, and H.A. Thomsen (1998). Infiltration phyto- and protozooplankton assemblages in the annual sea-ice of Disko Island, West Greenland, spring 1996. Polar Biology, 20: 377–381.

Buck, K.R., L. Uttal-Cooke, C.H. Pilskaln, D.L. Roelke, M.C. Villac, G.A. Fryxell, L. Cifuentes, and F.P. Chavez (1992). Autoecology of the diatom Pseudo-nitzschia australis, a domoic acid producer, from Monterey Bay, California. Marine Ecology Progress Series, 84: 293–302.

Burdige, D.J., W.M. Berelson, K.H. Coale, J. McManus, and K.S. Johnson (1999). Fluxes of dissolved organic carbon from California continental margin sediments. Geochimica et Cosmochimica Acta, 63: 1507–1515.

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Castro, C.G., T.R. Baumgartner, S. Bograd, R. Castro, F.P. Chavez, C.A. Collins, R. Durazo, J. Garcύ΄a, G. Gaxiola-Castro, T. Hayward, A. Huyer, R. Lynn, A.S. Mascarenhas, M.R.D. Robert, R.L. Smith, P.A. Wheeler, and F.A. Whitney (2002). Introduction to 'The 1997–8 El Niρo Atlas of oceanographic conditions along the west coast of North America (23°N-50°N).' Progress in Oceanography, 54: 501–508.

Castro, C.G., F.P. Chavez, and C. Collins (2001). The role of the California Undercurrent in the export of denitrified waters from the eastern tropical North Pacific. Global Biogeochemical Cycles, 21: 819–830.

Castro, C.G., C.A. Collins, P.M. Walz, J.T. Pennington, R.P. Michisaki, G.E. Friederich, and F.P. Chavez (2002). Nutrient variability during El Niρo 1997–98 in the California current system off central California. Progress in Oceanography, 54: 171–184.

Chai, F., M.S. Jiang, Y. Chao, R.C. Dugdale, F.P. Chavez, and R.T. Barber (2007). Modeling responses of diatom productivity and biogenic silica export to iron enrichment in the equatorial Pacific Ocean. Global Biogeochemical Cycles, 21: doi: 10.1029/2006GB002804.

Chang, G., K.L. Mahoney, A. Briggs-Whitmire, D.D.R. Kohler, C.D. Mobley, M. Lewis, M.A. Moline, E. Boss, M. Kim, W. Philpot, and T.D. Dickey (2004). The new age of hyperspectral oceanography. Oceanography, 17: 16-23.

Chao, Y., Z. Li, J. Kindle, J.D. Paduan, and F.P. Chavez (2003). A high-resolution surface vector wind product for coastal oceans: Blending satellite scatterometer measurements with regional mesoscale atmospheric model simulations. Geophysical Research Letters, 30: 1013.

Chapin, T.P., J.M. Caffrey, H.W. Jannasch, L.J. Coletti, J.C. Haskins, and K.S. Johnson (2004). Nitrate sources and sinks in Elkhorn Slough, California: Results from long-term continuous in situ nitrate analyzers. Estuaries, 27: 882-894.

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Chase, Z., K.S. Johnson, V.A. Elrod, J.N. Plant, S.E. Fitzwater, L. Pickell, and C.M. Sakamoto (2005). Manganese and iron distributions off central California influenced by upwelling and shelf width. Marine Chemistry, 95: 235-254 doi: 10.1016/j.marchem.2004.09.006.

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Chavez, F.P. (1995). A comparison of ship and satellite chlorophyll from California and Peru. Journal of Geophysical Research, 100: 24855–24862.

Chavez, F.P. (1989). Size distribution of phytoplankton in the central and eastern tropical Pacific. Global Biogeochemical Cycles, 3: 27–35.

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Chavez, F.P., R.T. Barber, and M.P. Sanderson (1989). The potential primary production of the Peruvian upwelling ecosystem. In: Instituto del Mar del Peru (IMARPE), edited by H.S. D. Pauly, P. Muck, and J. Mendo. Deutsche Gesellschaft fόr Technische Zusammenarbeit (GTZ, GmbH, Eschborn, Federal Republic of Germany; and International Center for Living Aquatic Resources Management (IFCLARM), Manila, Philippines, Callao, Perϊ, pp. 50–63.

Chavez, F.P. and R.C. Brusca (1991). The Galapagos Islands and their relation to oceanographic processes in the tropical Pacific. In: Galapagos Marine Invertebrates, edited by M.J. James. Plenum Press, New York, New York, pp. 9–33.

Chavez, F.P., K.R. Buck, and R.T. Barber (1990). Phytoplankton taxa in relation to primary production in the equatorial Pacific. Deep-Sea Research, 37: 1733–1752.

Chavez, F.P., K. R. Buck, R.R. Bidigare, D.M. Karl, D. Hebel, M. Latasa, L. Campbell, and  J. Newton (1995). On the chlorophyll a retention properties of glass-fiber GF/F filters. Limnology and Oceanography, 40: 428–433.

Chavez, F.P., K.R. Buck, K.H. Coale, J.H. Martin, G.R. DiTullio, N. A. Welschmeyer, A.C. Jacobson, and R.T. Barber (1991). Growth rates, grazing, sinking and iron limitation of equatorial Pacific phytoplankton. Limnology and Oceanography, 36: 1816–1827.

Chavez, F.P., K.R. Buck, S.K. Service, J. Newton, and R.T. Barber (1996). Phytoplankton variability in the central and eastern tropical Pacific. Deep-Sea Research II, 43: 835–870.

Chavez, F.P. and C.A. Collins (2000). Studies of the California current system: Present, past and future. Deep-Sea Research II, 47: 761–763.

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Chavez, F.P., J.T. Pennington, R. Herlien, H. W. Jannasch, G. Thurmond, and G.E. Friederich (1997). Moorings and drifters for real-time interdisciplinary oceanography. American Meteorological Society, 14: 1199–1211.

Chavez, F.P., J. Ryan, S.E. Lluch-Cota, and M. Ρiquen C. (2003). From anchovies to sardines and back: Multidecadal change in the Pacific Ocean. Science, 299: 217–221. [Abstract] [Full text]

Chavez, F.P., S.K. Service, and S. Buttrey (1996). Temperature-nitrate relationships in the central and eastern tropical Pacific. Journal of Geophysical Research, 101: 20553–20564.

Chavez, F.P. and S.S. Smith (1995). Biological and chemical consequences of open ocean upwelling systems. In: Upwelling in the Ocean: Modern Processes and Ancient Records, edited by C.P. Summerhayes, K.C. Emeis, M.V. Angel, R.L. Smith, and B. Zeitzschel. J. Wiley & Sons, Chichester, England, pp.149–169.

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