clean_transect.m This is a non-interactive, batch processing version of John Ryan's process_auvmission.m. It performs the following functions:
1. References file automissiondata.m to get listing of directories to be processed. 2. Loads data and processes variables: a. bins to a 1-second time base b. median filters (bin 5) OBS and salinity c. shifts fluorescence back by 8 seconds d. crops first 60 seconds and last 25 seconds of the mission 3. Generates automission.mat data file with the following fields: T S F Biolum Biotemp Bioflow OBS epochsec depth startlat startlon roll pitch yaw Xpos Ypos ilat ilon idist dist missionID ep 4. Plots the dead-reckoned track and lat/long endpoints as *.trk.jpg 5. Saves the plot of individual variables over time as *line.jpg
xportBL.m 1. References file automissiondata.m to get listing of directories to process. 2. Saves the following variables in ASCII and netCDF format: time ILAT ILON Depth IDIST XPOS YPOS s t Biotemp obs f Biolum Bioflow
Missions from year day 236, 237, and mission 238.06 were omitted due to equipment problems. Missions 241.01 and 241.02 were also omitted.