Messié, M. & Chavez, F. P. (2015) Seasonal regulation of primary production in eastern boundary upwelling systems. Progress in Oceanography, 0).

Timmerman, A. H. V., Mcmanus, M. A., Cheriton, O. M., Cowen, R. K., Greer, A. T., Kudela, R. M., Ruttenberg, K. & Sevadjian, J. (2014) Hidden thin layers of toxic diatoms in a coastal bay. Deep Sea Research Part II: Topical Studies in Oceanography, 101(0), 129-140.

Sutton, A. J., Feely, R. A., Sabine, C. L., Mcphaden, M. J., Takahashi, T., Chavez, F. P., Friederich, G. E. & Mathis, J. T. (2014) Natural variability and anthropogenic change in equatorial Pacific surface ocean pCO2 and pH. Global Biogeochemical Cycles, 28(2), 2013GB004679.

Sudek, S., Everroad, R. C., Gehman, A.-L. M., Smith, J. M., Poirier, C. L., Chavez, F. P. & Worden, A. Z. (2014) Cyanobacterial Distributions along a Physico-chemical Gradient in the Northeastern Pacific Ocean. Environmental Microbiology, n/a-n/a.

Smith, J. M., Mosier, A. C. & Francis, C. A. (2014) Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments. Microbial Ecology, 69(1), 13-24.

Smith, J. M., Chavez, F. P. & Francis, C. A. (2014) Ammonium Uptake by Phytoplankton Regulates Nitrification in the Sunlit Ocean. PLOS One, 9(9):e108173(

Smith, J. M., Casciotti, K. L., Chavez, F. P. & Francis, C. A. (2014) Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters. ISME J, 8(8), 1704-1714.

Ryan, J. P., Mcmanus, M. A., Kudela, R. M., Lara Artigas, M., Bellingham, J. G., Chavez, F. P., Doucette, G., Foley, D., Godin, M., Harvey, J. B. J., Marin Iii, R., Messié, M., Mikulski, C., Pennington, T., Py, F., Rajan, K., Shulman, I., Wang, Z. & Zhang, Y. (2014) Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow. Deep Sea Research Part II: Topical Studies in Oceanography, 101(0), 63-79.

Muller-Karger, F. E., Kavanaugh, M. T., Montes, E., Balch, W. M., Breitbart, M., Chavez, F. P., Doney, S. C., Johns, E. M., Letelier, R. M., Lomas, M. W., Sosik, H. M. & White, A. E. (2014) A framework for a marine biodiversity observing network within changing continental shelf seascapes. Oceanography, 27(2)(18–23.

Ho, D., Engel, V., Ferron, S., Friederich, G., Barr, J. & Wanninkhof, R. (2014) Carbon cycling in a mangrove-dominated estuary of Everglades National Park, Florida, USA. EGU General Assembly 2014 16 ed. Vienna, Austria, Copernicus.

Guo, L., Chai, F., Xiu, P., Xue, H., Rao, S., Liu, Y. & Chavez, F. P. (2014) Seasonal dynamics of physical and biological processes in the central California Current System: A modeling study. Ocean Dynamics, 64(8), 1137-1152.

Fiechter, J., Curchitser, E. N., Edwards, C. A., Chai, F., Goebel, N. L. & Chavez, F. P. (2014) Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography. Global Biogeochemical Cycles, 28(4), 2013GB004683.

Doney, S., Rosenburg, A., Alexander, M., Chavez, F., Harvell, C. D., Hoffman, G., Orback, M. & Rucklehaus, M. (2014) Oceans and Marine Resources, in: J. M. Melillo, T. T. C. Richmond & G. W. Yohe (Eds) Climate Change Impacts in the United States: The Third National Climate Assessment 557-578.

Chavez, F. P., Hobday, A. J., Strutton, P., Gierach, M., Radenac, M.-H., Chai, F., Lehodey, P., Evans, K. & Guevara, R. (2014) The tropical Pacific in relation to biological productivity and living resources. Intergovernmental Oceanographic Commission. UNESCO.

Berdalet, E., Mcmanus, M. A., Ross, O. N., Burchard, H., Chavez, F. P., Jaffe, J. S., Jenkinson, I. R., Kudela, R., Lips, I., Lips, U., Lucas, A., Rivas, D., Ruiz-De La Torre, M. C., Ryan, J., Sullivan, J. M. & Yamazaki, H. (2014) Understanding harmful algae in stratified systems: Review of progress and future directions. Deep Sea Research Part II: Topical Studies in Oceanography, 101(0), 4-20.

Xu, Y., Chai, F., Rose, A., Ñiquen , M. & Chavez, F. P. (2013) Environmental influences on the interannual variation and spatial distribution of Peruvian anchovy (Engraulis ringens) population dynamics from 1991 to 2007: a three-dimensional modeling study. Ecological Modelling, . Global Climate Change and Marine Ecosystems, 264(64-82.

Tugrul, S., Murray, J. W., Friederich, G. E. & Salihoglu, I. (2013) Spatial and temporal variability in the chemical properties of the oxic and suboxic layers of the Black Sea. Journal of Marine Systems, 0).

Sevadjian, J. C., Mcmanus, M. A., Ryan, J., Greer, A. T., Cowen, R. K. & Woodson, C. B. (2013) Across-shore variability in plankton layering and abundance associated with physical forcing in Monterey Bay, California. Continental Shelf Research, 72(0), 138-151.

Santora, J. A., Sydeman, W. J., Messié, M., Chai, F., Chao, Y., Thompson, S. A., Wells, B. K. & Chavez, F. P. (2013) Triple check: Observations verify structural realism of an ocean ecosystem model. Geophysical Research Letters, 40(7).

Ryan, J. P., Mcmanus, M. A., Kudela, R. M., Lara Artigas, M., Bellingham, J. G., Chavez, F. P., Doucette, G., Foley, D., Godin, M., Harvey, J. B. J., Marin Iii, R., Messié, M., Mikulski, C., Pennington, J. T., Py, F., Rajan, K., Shulman, I., Wang, Z. & Zhang, Y. (2013) Boundary influences on phytoplankton ecology in a stratification-enhanced upwelling shadow. Deep-Sea Research Part II, 101), 63-79.

Radenac, M.-H., Messié, M., Leger, F. & Bosc, C. (2013) A very oligotrophic zone observed from space in the equatorial Pacific warm pool. Remote Sensing of Environment, 134(224-233.

Ottesen, E. A., Young, C. R., Eppley, J. M., Ryan, J. P., Chavez, F. P., Scholin, C. A. & Delong, E. F. (2013) Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences of the United States of America, 110(6), E488-E497.

Messié, M. & Chavez, F. P. (2013) Physical-biological synchrony in the global ocean associated with recent variability in the central and western equatorial Pacific. Journal of Geophysical Research, 118(8), 3782-3794.

Greer, A. T., Cowen, R. K., Guigand, C. M., Mcmanus, M. A., Sevadjian, J. C. & Timmerman, A. H. V. (2013) Relationships between phytoplankton thin layers and the fine-scale vertical distributions of two trophic levels of zooplankton. Journal of Plankton Research, 35(5), 939-956.

Gomes, K., Cline, D., Edgington, D., Godin, M., Maughan, T., Mccann, M., O'reilly, T., Bahr, F., Chavez, F., Messié, M., Das, J. & Rajan, K. (2013) ODSS: A Decision Support System for Ocean Exploration. 29th IEEE International Conference on Data Engineering (ICDE). Brisbane, Australia, IEEE.

Gierach, M. M., Messié, M., Lee, T., Karnauskas, K. B. & Radenac, M.-H. (2013) Biophysical responses near equatorial islands in the Western Pacific Ocean during El Niño/La Niña transitions. Geophysical Research Letters, 40(20), 2013GL057828.

Fishman, J., Iraci, L. T., Al-Saadi, J., Chance, K., Chavez, F., Chin, M., Coble, P., Davis, C., Digiacomo, P. M., Edwards, D., Eldering, A., Goes, J., Herman, J., Hu, C., Jacob, D. J., Jordan, C., Kawa, S. R., Key, R., Liu, X., Lohrenz, S., Mannino, A., Natraj, V., Neil, D., Neu, J., Newchurch, M., Pickering, K., Salisbury, J., Sosik, H., Subramaniam, A., Tzortziou, M., Wang, J. & Wang, M. (2013) The United States' Next Generation Of Atmospheric Composition And Coastal Ecosystem Measurements NASA's Geostationary Coastal And Air Pollution Events (GEO-CAPE) Mission. Bulletin of the American Meteorological Society, 93(10), 1547-+.

De Brabandere, L., Canfield, D. E., Dalsgaard, T., Friederich, G. E., Revsbech, N. P., Ulloa, O. & Thamdrup, B. (2013) Vertical partitioning of nitrogen-loss processes across the oxic-anoxic interface of an oceanic oxygen minimum zone. Environmental Microbiology, n/a-n/a.

Bjorkstedt, E. P., Goericke, R., Mcclatchie, S., Weber, E., Watson, W., Lo, N., Peterson, W. T., Brodeur, R. D., Auth, T., Fisher, J., Morgan, C., Peterson, J., Largier, J., Bograd, S. J., Durazo, R., Gaxiola-Castro, G., Lavaniegos, B., Chavez, F. P., Collins, C. A., Hannah, B., Field, J., Sakuma, K., Satterthwaite, W., O'farrell, M., Hayes, S., Harding, J., Sydeman, W. J., Thompson, S. A., Warzybok, P., Bradley, R., Jahncke, J., Golightly, R. T., Schneider, S. R., Suryan, R. M., Gladics, A. J., Horton, C. A., Kim, S. Y., Melin, S. R., Delong, R. L. & Abell, J. (2013) State Of The California Current 2011-2012: Ecosystems Respond To Local Forcing As La Nina Wavers And Wanes. California Cooperative Oceanic Fisheries Investigations Reports, 53(41-76.

Pfeil, B., Olsen, A., Bakker, D. C. E., Hankin, S., Koyuk, H., Kozyr, A., Malczyk, J., Manke, A., Metzl, N., Sabine, C. L., Akl, J., Alin, S. R., Bellerby, R. G. J., Borges, A., Boutin, J., Brown, P. J., Cai, W. J., Chavez, F. P., Chen, A., Cosca, C., Fassbender, A. J., Feely, R. A., González-Dávila, M., Goyet, C., Hardman-Mountford, N., Heinze, C., Hood, M., Hoppema, M., Hunt, C. W., Hydes, D., Ishii, M., Johannessen, T., Jones, S. D., Key, R. M., Körtzinger, A., Landschützer, P., Lauvset, S. K., Lefèvre, N., Lenton, A., Lourantou, A., Merlivat, L., Midorikawa, T., Mintrop, L., Miyazaki, C., Murata, A., Nakadate, A., Nakano, Y., Nakaoka, S., Nojiri, Y., Omar, A. M., Padin, X. A., Park, G. H., Paterson, K., Perez, F. F., Pierrot, D., Poisson, A., Ríos, A. F., Santana-Casiano, J. M., Salisbury, J., Sarma, V. V. S. S., Schlitzer, R., Schneider, B., Schuster, U., Sieger, R., Skjelvan, I., Steinhoff, T., Suzuki, T., Takahashi, T., Tedesco, K., Telszewski, M., Thomas, H., Tilbrook, B., Tjiputra, J., Vandemark, D., Veness, T., Wanninkhof, R., Watson, A. J., Weiss, R., Wong, C. S. & Yoshikawa-Inoue, H. (2012) A uniform, quality controlled Surface Ocean CO2 Atlas (SOCAT). Earth System Science Data Discussions, Copernicus Publications, 5(2), 735-780.

Paerl, R. W., Turk, K. A., Beinart, R. A., Chavez, F. P. & Zehr, J. P. (2012) Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR. Environmental Microbiology, 14(3), 580-593.

Messié, M. & Chavez, F. P. (2012) A global analysis of ENSO synchrony: the oceans biological response to physical forcing. Journal of Geophysical Research.

Jolliff, J. K., Gould Jr., R. W., Penta, B., Teague, W. J., Derada, S., Chavez, F. P. & Arnone, R. A. (2012) Water mass bio-optical properties in the Monterey Bay region: Fluorescence-based inference of shifts in phytoplankton photophysiology. Journal of Geophysical Research.

Hales, B., Strutton, P. G., Saraceno, M., Letelier, R., Takahashi, T., Feely, R., Sabine, C. & Chavez, F. (2012) Satellite-based prediction of pCO2 in coastal waters of the eastern North Pacific. Progress in Oceanography, 0).

Gomez, F., Montecinos, A., Hormazabal, S., Cubillos, L. A., Correa-Ramirez, M. & Chavez, F. P. (2012) Impact of spring upwelling variability off southern-central Chile on common sardine (Strangomera bentincki) recruitment. Fisheries Oceanography, no-no.

Frolov, S., Ryan, J. P. & Chavez, F. P. (2012) Predicting euphotic-depth-integrated chlorophyll-a from discrete-depth and satellite-observable chlorophyll-a off central California. Journal of Geophysical Research-Oceans, 117(7.

Das, J., Py, F., Maughan, T., O'reilly, T., Messié, M., Ryan, J., Sukhatme, G. S. & Rajan, K. (2012) Coordinated sampling of dynamic oceanographic features with underwater vehicles and drifters. International Journal of Robotics Research, 31(626-646.

Chavez, F. P. (2012) Climate change and marine ecosystems. Proceedings of the National Academy of Sciences of the United States of America, 109(47), 19045-19046.

Buitenhuis, E. T., W. K. W. Li, D. Vaulot, M. W. Lomas, M. Landry, F. Partensky, D. M. Karl, O. Ulloa, L. Campbell, S. Jacquet, F. Lantoine, F. Chavez, D. Macias, M. Gosselin & Mcmanus, G. B. (2012) Picophytoplankton biomass distribution in the global ocean. Earth System Science Data Discussions, 5(221-242.

Bertrand, A., Chaigneau, A., Peraltilla, S., Ledesma, J., Graco, M., Monetti, F. & Chavez, F. P. (2012) Oxygen: A Fundamental Property Regulating Pelagic Ecosystem Structure in the Coastal Southeastern Tropical Pacific. Plos One, 6(12), 8.

Paerl, R. W., Johnson, K. S., Welsh, R. M., Worden, A. Z., Chavez, F. P. & Zehr, J. P. (2011) Differential distributions of Synechococcus subgroups across the California current system. Frontiers in Microbiology 2), 1-22.

Messié, M. & Chavez, F. (2011) Global Modes of Sea Surface Temperature Variability in Relation to Regional Climate Indices. Journal of Climate, 24(16), 4314-4331.

Gray, S. E. C., Degrandpre, M. D., Moore, T. S., Martz, T. R., Friederich, G. E. & Johnson, K. S. (2011) Applications of in situ pH measurements for inorganic carbon calculations. Marine Chemistry, 125(1-4), 82-90.

Das, J., Maughan, T., Mccann, M., Godin, M., O’reilly, T., Messié, M., Bahr, F., Gomes, K., Py, F., Bellingham, J., Sukhatme, G. S. & Rajan, K. (2011) Towards mixed-initiative, multi-robot field experiments: design, deployment, and lessons learned. International Conference on Intelligent Robots and Systems (IROS). San Francisco, USA.

Chavez, F. P., Messié, M. & Pennington, J. T. (2011) Marine primary production in relation to climate variability and change. Annual Review of Marine Science, 3), 227-260.

Castro, C. G., Collins, C. A., Pennington, J. T., Zúñiga, D. & Chavez, F. P. (2011) Spatial distribution and offshore export of total organic carbon along the eastern boundary of the Subtropical North Pacific. Advances in Oceanography and Limnology, 2(2), 93-106.

Bjorkstedt. E., Goericke, R., Mcclatchie, S., Chavez, F. P., Weber, E., Watson, W., Lo, N., Peterson, B., Emmett, B., Brodeur, R., Peterson, J., Litz, M., Gomez-Valdez, J., Gaxiola-Castro, G., Lavaniegos, B., Collins, C. A., Field, J., Sakuma, K., Warzybok, P., Bradley, R., Jahncke, J., Bograd, S., Schwing, F., Campbell, G. S., Hildebrand, J., Sydeman, W., Thompson, S. A., Largier, J., Halle, C., Kim, S. Y. & Abell, J. (2011) State of the California Current 2010-2011. Regionally variable responses to a strong (but fleeting?) La Niña. California Cooperative Fisheries Investigation Reports, 52(36:68.

Wankel, S. D., Joye, S. B., Samarkin, V. A., Shah, S. R., Friederich, G., Melas-Kyriazi, J. & Girguis, P. R. (2010) New constraints on methane fluxes and rates of anaerobic methane oxidation in a Gulf of Mexico brine pool via in situ mass spectrometry. Deep-Sea Research Part II: Topical Studies in Oceanography, 57(21-23), 2022-2029.

Pennington, J. T., Castro, C. A., Collins, C. A., Evans, W. W. I., Friederich, G. E., Michisaki, R. P. & Chavez, F. P. (2010) A carbon budget for the northern and central California coastal upwelling systemContinental Margins Task Team The Synthesis Book.

Lester, S. E., Mcleod, K. L., Tallis, H., Ruckelshaus, M., Halpern, B. S., Levin, P. S., Chavez, F. P., Pomeroy, C., Mccay, B. J., Costello, C., Gaines, S. D., Mace, A. J., Barth, J. A., Fluharty, D. L. & Parrish, J. K. (2010) Science in support of ecosystem-based management for the US West Coast and beyond. Biological Conservation, 143(3), 576-587.

Knepp, T. N., Bottenheim, J., Carlsen, M., Carlson, D., Donohoue, D., Friederich, G., Matrai, P. A., Netcheva, S., Perovich, D. K., Santini, R., Shepson, P. B., Simpson, W., Valentic, T., Williams, C. & Wyss, P. J. (2010) Development of an autonomous sea ice tethered buoy for the study of ocean-atmosphere-sea ice-snow pack interactions: the O-buoy. Atmospheric Measurement Techniques, 3(1), 249-261.

Cuvelier, M. L., Allen, A. E., Monier, A., Mccrow, J. P., Messiã©, M., Tringe, S. G., Woyke, T., Welsh, R. M., Ishoey, T., Lee, J. H., Binder, B. J., Dupont, C. L., Latasa, M., Guigand, C., Buck, K. R., Hilton, J., Thiagarajan, M., Caler, E., Read, B., Lasken, R. S., Chavez, F. P. & Worden, A. Z. (2010) Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proceedings of the National Academy of Sciences of the United States of America, 107(33), 14679-14684.

Bjorkstedt, E. P., Goericke, R., Mcclatchie, S., Weber, E., Watson, W., Lo, N., Peterson, B., Emmett, B., Peterson, J., Durazo, R., Gaxiola-Castro, G., Chavez, F., Pennington, J. T., Collins, C. A., Field, J., Ralston, S., Sakuma, K., Bograd, S. J., Schwing, F. B., Xue, Y., Sydeman, W. J., Thompson, S. A., Santora, J. A., Largier, J., Halle, C., Morgan, S., Kim, S. Y., Merkens, K. P. B., Hildebrand, J. A. & Munger, L. M. (2010) State of the California current 2009-2010: Regional variation persists through transition from La Niña to El Niño (and back?). California Cooperative Oceanic Fisheries Investigations Reports, 51(39-69)